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Aliases & Descriptions for IGFBP5
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| IBP-5 3 | | IBP5 2, 3, 5 | | IGFBP-5 3 |
| | | Descriptions |
|---|
| IGF-binding protein 5 3 | | insulin-like growth factor binding protein 5 2 |
|
| | Search outside databases for aliases for IGFBP5 genePrevious GC identifers: GC02M215637 GC02M216262 GC02M217504 GC02M217743 GC02M217362 |
Summaries for IGFBP5(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| UniProtKB/Swiss-Prot: IBP5_HUMAN, P24593Function: IGF-binding proteins prolong the half-life of the IGFs and have been shown to either inhibit or stimulate the growth promoting effects of the IGFs on cell culture. They alter the interaction of IGFs with their cell surface receptorsGene Wiki entry for IGFBP5 |
Genomic Location for IGFBP5
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the IGFBP5 gene 
Entrez Gene cytogenetic band: 2q33-q36 Ensembl cytogenetic band: 2q35 HGNC cytogenetic band: 2q33-q36IGFBP5 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 2 GeneLoc Exon Structure GeneLoc location for GC02M217245:
(about GC identifiers)
Start:
|
217,245,073 bp from pter |
End:
|
217,268,516 bp from pter |
Size:
|
23,444 bases |
Orientation:
|
minus strand |
RefSeq DNA sequence:- NC_000002.10 NT_005403.16
| Proteins for IGFBP5
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: IBP5_HUMAN, P24593 (See
protein sequence)Recommended Name: Insulin-like growth factor-binding protein 5 precursor Size: 272 amino acids; 30570 Da
Subcellular location: Secreted
PDB structure from and Proteopedia :1BOE (3D)
 1H59 (3D)
 
Secondary accessions: Q5U0A3Post-translational modifications:
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_000590.1
ENSEMBL proteins: ENSP00000233813
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
2 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for IGFBP5: Assays for IGFBP5: | Protein
Domains/ Families for IGFBP5(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P24593
ProtoNet protein and cluster: P24593 2 Blocks protein families: IPB000716 Thyroglobulin type-1 IPB000867 Insulin-like growth factor-binding protein
UniProtKB/Swiss-Prot: IBP5_HUMAN, P24593Similarity: Contains 1 IGFBP N-terminal domainSimilarity: Contains 1 thyroglobulin type-1 domain | Gene Function for IGFBP5
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_000599
Applied Biosystems Silencer® siRNAs for IGFBP5
Sigma-Aldrich siRNA for IGFBP5  Sigma-Aldrich shRNA for IGFBP5  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_000599                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_000599                                  untagged cDNA clones in CMV expression vector (see all 3): NM_000599 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_000599
UniProtKB/Swiss-Prot: IBP5_HUMAN, P24593Function: IGF-binding proteins prolong the half-life of the IGFs and have been shown to either inhibit or stimulate the growth promoting effects of the IGFs on cell culture. They alter the interaction of IGFs with their cell surface receptorsGenatlas biochemistry entry for IGFBP5:insulin-like growth factor binding protein 5,high affinity,complexing with IGF1 and IGF2 and acid labile subunit expressed predominantly in kidney,fetal tissues,adult conective tissues and CSF,present in the serum but decreasing with age after puberty. Binding to bone cells (skeletal growth factor)6 MGI mutant phenotypes (inferred from 2 alleles ) (MGI details for Igfbp5):
1 Gene Ontology (GO) molecular function term (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0031994 | insulin-like growth factor I binding |
IPI | 10766744 | About this table | Pathways & Interactions for IGFBP5
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
3 Sigma-Aldrich "Your Favorite Gene" Pathways for IGFBP5 (Your Favorite Gene powered by Ingenuity) 
Gene Network CentralTM Interacting Genes and Proteins Network for IGFBP5 
5/24 Interacting proteins for IGFBP5 (ENSP000002338133 P245932) via UniProtKB, MINT, and/or STRING (see all 24
)About this table
5/6 Gene Ontology (GO) biological process terms (links to tree view) (see all 6
): About this table
|
Drugs & Compounds for IGFBP5(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|  |
Enzo Life Sciences drugs & compounds for IGFBP5 |
Browse Tocris compounds for IGFBP5 10/27 Novoseek chemical compound relationships for IGFBP5 gene (see all 27
)
| Compound |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| ribonucleic acid |
47.15 |
2 |
8855838 (1) |
| procollagen |
37.77 |
4 |
11054645 (1), 14517421 (1), 9700476 (1) |
| 1,25 dihydroxy vitamin d3 |
36.13 |
1 |
9199505 (1) |
| heparan sulfate |
30.13 |
1 |
9786878 (1) |
| mannose 6-phosphate |
25.43 |
1 |
15642732 (1) |
| thymidine |
24.90 |
4 |
10801263 (1), 8817658 (1), 8997222 (1), 11691647 (1) |
| progesterone |
15.44 |
18 |
10473602 (6), 9462691 (2), 18373644 (1), 18497344 (1) (see all 7) |
| phosphatidylinositol |
14.78 |
4 |
10830316 (1), 10601276 (1), 16619307 (1), 15068962 (1) |
| estradiol |
11.81 |
5 |
16368782 (1), 1373605 (1), 12723086 (1), 8930399 (1) |
| forskolin |
8.74 |
2 |
9462691 (1), 7534734 (1) |
About this table
|
Transcripts for IGFBP5(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_000599
Sigma-Aldrich siRNA for IGFBP5  Sigma-Aldrich shRNA for IGFBP5  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_000599 REFSEQ mRNAs for IGFBP5 gene: NM_000599.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_000599               OriGene GFP tagged cDNA clone in CMV expression vector: NM_000599                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_000599                                  untagged cDNA clones in CMV expression vector (see all 3): NM_000599  Additional cDNA sequence: AF055033.1 AF147308.1 AK309609.1 AK314992.1 BC008099.1 BC011453.1 BC018427.1 BC032366.1 BC039838.1 BC046102.1 BC073984.1 BC089383.1 BC133664.1 BT019706.1 BT019707.1 CR456809.1 L27560.1 M62782.1 M65062.1 24/31 DOTS entries (see all 31
): DT.75170481 DT.100705038 DT.100884425 DT.91728428 DT.100671612 DT.100697391 DT.120931735 DT.100884427 DT.97868293 DT.97775790 DT.120931724 DT.95305798 DT.102838850 DT.120931756 DT.95370309 DT.97793699 DT.120931741 DT.100672615 DT.120931738 DT.120931755 DT.120931799 DT.120931832 DT.120931834 DT.40245280 24/826 AceView cDNA sequences (see all 826
):CO393416 BQ018572 AI564375 AL079792 CF131579 BM128680 CD514994 F09479 CF131348 BU145913 BC018427 AI589948 BE502399 CD678937 BM694479 BC073984 CD609118 AA086379 AI459753 BU739027 AI453681 CN481841 F01379 CA389138
highest scoring ESTs for IGFBP5:AF055033 M65062 AA046381 AA298450 AA298593 AA369565 AA373088 AA374325 AA374965 AA376523 Unigene Cluster for IGFBP5: Insulin-like growth factor binding protein 5 Hs.607212 [show with all ESTs]Unigene Representative Sequence: NM_000599
GeneLoc Exon Structure
1 Ensembl transcript including schematic representation: ENST00000233813
|
Expression for IGFBP5
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| IGFBP5 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for IGFBP5
1 / 2 / 3 19 probe-sets matching IGFBP5 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: ACAAAGCATT
SOURCE GeneReport for Unigene cluster: Hs.607212
Expression variation in blood from EXPOLDB for IGFBP5 UniProtKB/Swiss-Prot: IBP5_HUMAN, P24593Tissue specificity: Osteosarcoma, and at lower levels in liver, kidney and brain |
Orthologs for IGFBP5
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for IGFBP5 gene from 5/7 species (see all 7
)
About this table Species with no ortholog for IGFBP5
ENSEMBL Gene Tree for IGFBP5 | Paralogs for IGFBP5(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for IGFBP5 gene
- IGFBP62 IGFBP32
|
SNPs/Variants for IGFBP5(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for IGFBP5 (up to first 250kb)
|
Disorders & Mutations for IGFBP5
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 146734
10/38 Novoseek disease relationships for IGFBP5 gene (see all 38
)
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| osteosarcoma |
49.01 |
16 |
16269403 (2), 18161051 (1), 7684391 (1), 11996908 (1) (see all 11) |
| breast cancer |
33.93 |
64 |
12777377 (6), 19341485 (5), 17651454 (5), 15802501 (4) (see all 19) |
| breast carcinoma |
29.42 |
6 |
18373644 (4), 9660801 (1), 1280130 (1) |
| renal osteodystrophy |
19.66 |
2 |
10657717 (1), 10652019 (1) |
| fibrosis idiopathic pulmonary |
17.94 |
1 |
17071587 (1) |
| glioblastoma |
16.58 |
5 |
16700616 (1), 14515014 (1), 16619307 (1), 9213226 (1) (see all 5) |
| bone loss |
15.02 |
3 |
9795371 (2), 8817691 (1) |
| prostate cancer |
12.55 |
12 |
10850457 (4), 10830316 (2), 10218991 (1), 17823924 (1) |
| tumors |
10.02 |
40 |
10850457 (3), 18775916 (3), 10218991 (3), 15618969 (2) (see all 19) |
| osteoarthritis |
9.21 |
3 |
15308529 (2), 9564845 (1) |
About this table
Human Gene Mutation Database: IGFBP5 Genetic Association Database: IGFBP5 Human Genome Epidemiology Navigator: IGFBP5 (3 documents)
|
Medical News for IGFBP5(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for IGFBP5 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/374 PubMed articles for IGFBP5 gene (see all 374
):- Characterization of the chromosomal gene and promoter for human insulin-like growth factor binding protein-5. (PubMed id 7511611)1, 2, 3, 4 Allander S.V.... Powell D.R. (1994)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- Structure of the IGF-binding domain of the insulin-like growth factor-binding protein-5 (IGFBP-5): implications for IGF and IGF-I receptor interactions. (PubMed id 9822601)3, 4 Kalus W.... Holak T.A. (1998)
- Isolation and characterization of circulating 13-kDa C-terminal fragments of human insulin-like growth factor binding protein-5. (PubMed id 9883900)3, 4 Standker L.... Forssmann W.-G. (1998)
- Molecular cloning of a new human insulin-like growth factor binding protein. (PubMed id 1850258)3, 4 Kiefer M.C.... Zapf J. (1991)
- Identification of five different insulin-like growth factor binding proteins (IGFBPs) from adult rat serum and molecular cloning of a novel IGFBP-5 in rat and human. (PubMed id 1709938)3, 4 Shimasaki S.... Ling N. (1991)
- A novel human insulin-like growth factor binding protein secreted by osteoblast-like cells. (PubMed id 1850257)3, 4 Andress D.L. and Birnbaum R.S. (1991)
- Fibronectin binds insulin-like growth factor-binding protein 5 and abolishes Its ligand-dependent action on cell migration. (PubMed id 14645245)1, 3 Xu Q....Duan C. (2004)
- Insulin-like growth factor-binding protein-5 is cleaved by physiological concentrations of thrombin. (PubMed id 9528953)1, 3 Zheng B....Clemmons D.R. (1998)
- Ras-association domain family 1 protein, RASSF1C, is an IGFBP-5 binding partner and a potential regulator of osteoblast cell proliferation. (PubMed id 16007340)1, 3 Amaar Y.G....Mohan S. (2005)
|
Search for IGFBP5
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing IGFBP5
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing IGFBP5
(According to HUGE)
About This Section
| -- |
Specialized Databases showing IGFBP5(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| Name | Description |
| NIEHS-SNPs | http://egp.gs.washington.edu/data/igfbp5/ |
|
| | | About This Section
| --
| Services for IGFBP5(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
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