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Aliases & Descriptions for IGFBP3
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases BP-53 1 , 2 IBP-3 3 IBP3 1 , 2 , 3 IGFBP-3 3
Descriptions IGF-binding protein 3 2 , 3 acid stable subunit of the 140 K IGF complex 2 binding protein 29 2 binding protein 53 2 growth hormone-dependent binding protein 2 insulin-like growth factor binding protein 3 2
Search outside databases for aliases for IGFBP3 genePrevious GC identifers: GC07M045598 GC07M045692 GC07M045725
Summaries for IGFBP3 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for IGFBP3 : This gene is a member of the insulin-like growth factor binding protein (IGFBP) family and encodesa protein with an IGFBP domain and a thyroglobulin type-I domain. The protein forms a ternarycomplex with insulin-like growth factor acid-labile subunit (IGFALS) and either insulin-likegrowth factor (IGF) I or II. In this form, it circulates in the plasma, prolonging the half-lifeof IGFs and altering their interaction with cell surface receptors. Alternate transcriptionalsplice variants, encoding different isoforms, have been characterized. [provided by RefSeq] UniProtKB/Swiss-Prot: IBP3_HUMAN, P17936 Function : IGF-binding proteins prolong the half-life of the IGFs and have been shown to eitherinhibit or stimulate the growth promoting effects of the IGFs on cell culture. They alter theinteraction of IGFs with their cell surface receptors
Genomic Location for IGFBP3
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the IGFBP3 gene Entrez Gene cytogenetic band: 7p13-p12 Ensembl cytogenetic band: 7p13 HGNC cytogenetic band: 7p13-p12 IGFBP3 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 7 GeneLoc Exon Structure
GeneLoc location for GC07M045918:
(about GC identifiers )
Start:
45,918,369 bp from pter
End:
45,927,396 bp from pter
Size:
9,028 bases
Orientation:
minus strand
1 alternative location : Chr 7-,CRA_TCAG 45,991,173-46,000,198
RefSeq DNA sequence: NC_000007.12 NT_007819.16 NT_079592.2 Proteins for IGFBP3
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: IBP3_HUMAN, P17936 (See
protein sequence )Recommended Name: Insulin-like growth factor-binding protein 3 precursor Size : 291 amino acids; 31674 Da
Subunit : Interacts with XLKD1 (By similarity). Binds IGF2 more than IGF1. Forms a ternary complexof about 140 to 150 kDa with IGF1 or IGF2 and a 85 kDa glycoprotein (ALS). Interacts with HN
Subcellular location : Secreted
Developmental stage : IGFBP3 levels are higher during extrauterine life and peak during puberty
Secondary accessions : A4D2F5 Q2V509 Q6P1M6 Q9UCL4
Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (2 alternative transcripts):
NP_000589.2 NP_001013416.1 ENSEMBL proteins: ENSP00000370473 ENSP00000370476 ENSP00000275521 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 3 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for IGFBP3: Assays for IGFBP3:
Protein
Domains/ Families for IGFBP3(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P17936 ProtoNet protein and cluster: P17936
2 Blocks protein families : IPB000716 Thyroglobulin type-1 IPB000867 Insulin-like growth factor-binding protein UniProtKB/Swiss-Prot: IBP3_HUMAN, P17936 Domain : The thyroglobulin type-1 domain mediates interaction with HNSimilarity : Contains 1 IGFBP N-terminal domainSimilarity : Contains 1 thyroglobulin type-1 domain
Gene Function for IGFBP3
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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Inhib. RNA: Invitrogen RNAi Products for gene knock-down (IGFBP3 ) Millipore RNAi Products for the Analysis of IGFBP3 Gene knock-down Abnova Chimera RNAi Products for Gene knock-down (IGFBP3 )
               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_000598 Applied Biosystems Silencer ® siRNAs for IGFBP3 Sigma-Aldrich siRNA for IGFBP3 Sigma-Aldrich shRNA for IGFBP3 Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_000598                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_000598                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_000598  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_001013398 UniProtKB/Swiss-Prot: IBP3_HUMAN, P17936 Function : IGF-binding proteins prolong the half-life of the IGFs and have been shown to eitherinhibit or stimulate the growth promoting effects of the IGFs on cell culture. They alter theinteraction of IGFs with their cell surface receptors Induction : IGFBP3 levels increase in the presence of IGF1, insulin and other growth-stimulatingfactors such as growth hormone, epidermal growth factor, and phorbol esters
Genatlas biochemistry entry for IGFBP3 :insulin-like growth factor binding protein 3,high affinity,expressed by liver and non hepatictissues,principal serum IGFBP,complexing with IGF1,IGF2 and an acid labile subunit. Mainlyregulated by GH. Regulator of cell somatic growth and cellular proliferation,either IGF dependentor IGF independent,parameter of GH activity in acromegalic patients
7 MGI mutant phenotypes (inferred from 2 alleles ) (MGI details for Igfbp3) :3 Gene Ontology (GO) molecular function terms (links to tree view) :
About this table
Pathways & Interactions for IGFBP3
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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5 Sigma-Aldrich "Your Favorite Gene" Pathways for IGFBP3 (Your Favorite Gene powered by Ingenuity) Gene Network CentralTM Interacting Genes and Proteins Network for IGFBP3 5/50 Interacting proteins for IGFBP3 (P17936 2 ENSP00000370473 3 ) via UniProtKB, MINT, and/or STRING (see all 50
)About this table 5/7 Gene Ontology (GO) biological process terms (links to tree view) (see all 7
):
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Drugs & Compounds for IGFBP3 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Enzo Life Sciences drugs & compounds for IGFBP3
Browse Tocris compounds for IGFBP3 10/32 Novoseek chemical compound relationships for IGFBP3 gene (see all 32
)
Compound
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
estradiol
64.99
134
7515764 (6), 9626134 (5), 8557625 (5), 14671165 (4) (see all 74 )
c-peptide
63.29
73
14770423 (4), 11808715 (4), 11072255 (3), 17689128 (3) (see all 41 )
glucose
60.35
241
11248744 (4), 7533774 (4), 18565922 (4), 15935983 (4) (see all 99 )
dehydroepiandrosterone sulfate
59.73
49
9100552 (3), 12940521 (2), 11314741 (2), 10468952 (2) (see all 22 )
androstenedione
58.14
35
9166698 (3), 16103701 (3), 11831514 (2), 15511959 (2) (see all 21 )
deoxypyridinoline
48.94
12
10999783 (2), 15579182 (1), 10469009 (1), 9589671 (1) (see all 7 )
dhea
47.38
27
11826868 (2), 16368782 (2), 15797966 (1), 17547689 (1) (see all 13 )
pyridinoline
45.22
8
9745414 (2), 8864369 (1), 7540898 (1), 9589671 (1)
pegvisomant
44.27
9
17289896 (3), 11527090 (1), 16720661 (1), 16269873 (1) (see all 5 )
ribonucleic acid
43.99
4
8855838 (1), 8550801 (1), 9048610 (1), 9100570 (1)
About this table
Transcripts for IGFBP3(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
Tagged/untagged cDNA clones from
OriGene , Expression Assays from Applied Biosystems )About This Section
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Inhib. RNA: Invitrogen RNAi Products for gene knock-down (IGFBP3 ) Millipore RNAi Products for the Analysis of IGFBP3 Gene knock-down Abnova Chimera RNAi Products for Gene knock-down (IGFBP3 )
               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_000598 Sigma-Aldrich siRNA for IGFBP3 Sigma-Aldrich shRNA for IGFBP3 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_000598 NM_001013398
REFSEQ mRNAs for IGFBP3 gene (2 alternative transcripts): NM_000598.4 NM_001013398.1
Applied Biosystems TaqMan ® Gene Expression Assays: NM_000598 NM_001013398
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_000598                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_000598                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_000598  
Additional cDNA sequence: CR595168.1 CR603591.1 CR605771.1 CR610513.1 CR613455.1 CR615539.1 CR618433.1 S56205.1
24/90 DOTS entries (see all 90
): DT.100884556 DT.100884573 DT.102837268 DT.121120781 DT.101985495 DT.86859956 DT.100884575 DT.100884596 DT.100884577 DT.100884572 DT.121120613 DT.92464402 DT.100884603 DT.97769487 DT.97816827 DT.121120710 DT.100884547 DT.100045316 DT.100849103 DT.100884588 DT.92464401 DT.101966637 DT.95172120 DT.100884549
24/1222 AceView cDNA sequences (see all 1222
):AL551293 AI700215 BG424726 AL545572 C75417 BE206573 BU552480 CB163582 BM711003 BQ573800 BQ669128 R79931 BP372204 BQ669425 AA076641 CR618433 BQ574650 N74163 AI379830 BM759162 BQ925106 BX324761 BQ932857 BI496721
highest scoring ESTs for IGFBP3 :AI752416 AK092447 AK097201 AK125224 AL047210 AL516544 AL540851 AL543160 AL544281 AL545059
Unigene Clusters for IGFBP3: Insulin-like growth factor binding protein 3 Hs.450230 [show with all ESTs ] , Hs.697535 [show with all ESTs ] Unigene Representative Sequences: NM_001013398 , BF570082 GeneLoc Exon Structure 5/16 Alternative Splicing Database (ASD) splice patterns (SP) for IGFBP3 (see all 16
) ExUns: 1 ^ 2 ^ 3a · 3b · 3c ^ 4 ^ 5a · 5b · 5c · 5d · 5e · 5f · 5g ^ 6 ^ 7a · 7b · 7c ^ 8a · 8b · 8c · 8d · 8e ^ 9a · 9b · 9c · 9d · SP1 :         -   -   -   -           -   -       -             -         SP2 :     -   -   -   -   -   -   -   -   -     -   -       -             -         SP3 :       -   -   -   -   -   -         -   -       -             -         SP4 :                         -   -       -             -         SP5 :       -   -   -   -   -   -         -   -       -   -   -         -        
ExUns: 9e ^ 10 ^ 11a · 11b SP1 :         SP2 :         SP3 :         SP4 :         SP5 :        
About this scheme ECgene alternative splicing isoforms for IGFBP3 3 Ensembl transcripts including schematic representations : ENST00000381083
ENST00000381086
ENST00000275521
Expression for IGFBP3
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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IGFBP3 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for IGFBP3 1 / 2 / 3
6 probe-sets matching IGFBP3 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: ACTGAGGAAASOURCE GeneReport for Unigene clusters: Hs.450230 Hs.697535 Expression variation in blood from EXPOLDB for IGFBP3
UniProtKB/Swiss-Prot: IBP3_HUMAN, P17936 Tissue specificity : Expressed by most tissues
Orthologs for IGFBP3
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for IGFBP3 gene from 5/6 species (see all 6
)
About this table Species with no ortholog for IGFBP3 ENSEMBL Gene Tree for IGFBP3 Paralogs for IGFBP3 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for IGFBP3 gene IGFBP5 2 IGFBP6 2
SNPs/Variants for IGFBP3 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for IGFBP3 (up to first 250kb)
Disorders & Mutations for IGFBP3
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 146732 10/98 Novoseek disease relationships for IGFBP3 gene (see all 98
)
Disease
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
laron syndrome
84.66
12
17350302 (3), 9437227 (2), 15751611 (1), 16403822 (1) (see all 9 )
growth hormone deficiency
82.40
62
10469014 (3), 9835431 (3), 7543832 (2), 7518726 (2) (see all 33 )
short stature
81.60
74
15679071 (3), 16820702 (2), 10932487 (2), 11207641 (2) (see all 49 )
growth failure
79.46
16
10359158 (2), 16507628 (2), 9186890 (1), 12405432 (1) (see all 11 )
acromegaly
74.82
111
7586626 (8), 9231047 (5), 10195375 (5), 7533774 (5) (see all 37 )
growth retardation
67.56
31
11207641 (3), 17726072 (2), 8894649 (1), 9795360 (1) (see all 23 )
igf-i resistance
66.61
5
15476454 (1), 16311944 (1), 12153610 (1), 12917202 (1)
growth disorders
64.53
8
1700965 (2), 16462144 (1), 7951670 (1), 12818134 (1) (see all 5 )
prostate cancer
61.59
306
17404112 (6), 14674736 (6), 15356036 (6), 18097534 (5) (see all 99 )
breast cancer
60.84
473
8609661 (7), 10067859 (6), 17287408 (6), 17416768 (6) (see all 99 )
About this table Human Gene Mutation Database : IGFBP3 Genetic Association Database: IGFBP3 Human Genome Epidemiology Navigator: IGFBP3 (83 documents)
Medical News for IGFBP3 (Possibly Related Articles in
Doctor's Guide )
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Publications for IGFBP3 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/1831 PubMed articles for IGFBP3 gene (see all 1831
): Insulin-like growth factor binding protein-3. Organization of the human chromosomal gene and demonstration of promoter activity. (PubMed id 1695633) 2, 3, 4 Cubbage M.L.... Powell D.R. (1990) A polymorphic locus in the promoter region of the IGFBP3 gene is related to mammographic breast density. (PubMed id 15066922) 1, 3, 6 Lai J.H....Narod S.A. (2004) Genetic polymorphisms in the IGFBP3 gene: association with breast cancer risk and blood IGFBP-3 protein levels among Chinese women. (PubMed id 15298948) 1, 3, 6 Ren Z....Zheng W. (2004) IGF-I and IGFBP-3 polymorphisms and risk of prostate cancer. (PubMed id 15800934) 1, 3, 6 Friedrichsen D.M....Stanford J.L. (2005) Polymorphisms in the IGF-1 and IGFBP 3 promoter and the risk of breast cancer. (PubMed id 15986122) 1, 3, 6 Wagner K....Forsti A. (2005) Polymorphisms and circulating levels in the insulin-like growth factor system and risk of breast cancer: a systematic review. (PubMed id 15668470) 1, 3, 6 Fletcher O....Silva I.d.o.s. .S. (2005) Association of an exon 1 polymorphism in the IGFBP3 gene with circulating IGFBP-3 levels and colorectal cancer risk: the multiethnic cohort study. (PubMed id 15894694) 1, 3, 6 Le Marchand L....Wilkens L.R. (2005) Promoter -202 A/C polymorphism of insulin-like growth factor binding protein-3 gene and non-small cell lung cancer risk. (PubMed id 16049980) 1, 3, 6 Moon J.W....Kim S.K. (2006) Insulin-like growth factor polymorphisms and colorectal cancer risk. (PubMed id 15894673) 1, 3, 6 Morimoto L.M....Potter J.D. (2005) Polymorphic variation at the -202 locus in IGFBP3: Influence on serum levels of insulin-like growth factors, interaction with plasma retinol and vitamin D and breast cancer risk. (PubMed id 12925957) 1, 3, 6 Schernhammer E.S....Pollak M.N. (2003)
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Genome Databases showing IGFBP3
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing IGFBP3
(According to HUGE )
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--
Specialized Databases showing IGFBP3 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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Name Description
ATLAS Chromosomes in Cancer entry for IGFBP3 Genetics and Cytogenetics in Oncology and Haematology NIEHS-SNPs http://egp.gs.washington.edu/data/igfbp3/ SHMPD http://shmpd.bii.a-star.edu.sg/gene.php?genestart=A&genename=IGFBP3
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-- Services for IGFBP3 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for IGFBP3:
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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009