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Aliases for IGFBP1 Gene

Aliases for IGFBP1 Gene

  • Insulin Like Growth Factor Binding Protein 1 2 3 5
  • IGF-Binding Protein 1 2 3 4
  • Placental Protein 12 2 3 4
  • Alpha-Pregnancy-Associated Endometrial Globulin 2 3
  • Insulin-Like Growth Factor Binding Protein 1 2 3
  • Growth Hormone Independent-Binding Protein 2 3
  • Amniotic Fluid Binding Protein 2 3
  • Binding Protein-28 2 3
  • Binding Protein-26 2 3
  • Binding Protein-25 2 3
  • IGFBP-1 3 4
  • IBP-1 3 4
  • IBP1 3 4
  • PP12 3 4
  • IGF-BP25 3
  • HIGFBP-1 3
  • AFBP 3

External Ids for IGFBP1 Gene

Previous HGNC Symbols for IGFBP1 Gene

  • IBP1

Previous GeneCards Identifiers for IGFBP1 Gene

  • GC07P045574
  • GC07P045668
  • GC07P045701
  • GC07P045894
  • GC07P045816
  • GC07P045927
  • GC07P046043
  • GC07P046067

Summaries for IGFBP1 Gene

Entrez Gene Summary for IGFBP1 Gene

  • This gene is a member of the insulin-like growth factor binding protein (IGFBP) family and encodes a protein with an IGFBP domain and a thyroglobulin type-I domain. The protein binds both insulin-like growth factors (IGFs) I and II and circulates in the plasma. Binding of this protein prolongs the half-life of the IGFs and alters their interaction with cell surface receptors. [provided by RefSeq, Jul 2008]

GeneCards Summary for IGFBP1 Gene

IGFBP1 (Insulin Like Growth Factor Binding Protein 1) is a Protein Coding gene. Diseases associated with IGFBP1 include Ovarian Disease and Endometriosis. Among its related pathways are PERK regulates gene expression and Development IGF-1 receptor signaling. GO annotations related to this gene include insulin-like growth factor binding and insulin-like growth factor II binding. An important paralog of this gene is IGFBP5.

UniProtKB/Swiss-Prot for IGFBP1 Gene

  • IGF-binding proteins prolong the half-life of the IGFs and have been shown to either inhibit or stimulate the growth promoting effects of the IGFs on cell culture. They alter the interaction of IGFs with their cell surface receptors. Promotes cell migration.

Gene Wiki entry for IGFBP1 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for IGFBP1 Gene

Genomics for IGFBP1 Gene

Regulatory Elements for IGFBP1 Gene

Enhancers for IGFBP1 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around IGFBP1 on UCSC Golden Path with GeneCards custom track

Promoters for IGFBP1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around IGFBP1 on UCSC Golden Path with GeneCards custom track

Genomic Location for IGFBP1 Gene

Chromosome:
7
Start:
45,888,357 bp from pter
End:
45,893,668 bp from pter
Size:
5,312 bases
Orientation:
Plus strand

Genomic View for IGFBP1 Gene

Genes around IGFBP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
IGFBP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for IGFBP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for IGFBP1 Gene

Proteins for IGFBP1 Gene

  • Protein details for IGFBP1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P08833-IBP1_HUMAN
    Recommended name:
    Insulin-like growth factor-binding protein 1
    Protein Accession:
    P08833
    Secondary Accessions:
    • A4D2F4
    • D3DVL9
    • Q8IYP5

    Protein attributes for IGFBP1 Gene

    Size:
    259 amino acids
    Molecular mass:
    27904 Da
    Quaternary structure:
    • Binds equally well IGF1 and IGF2.
    SequenceCaution:
    • Sequence=AAA52540.1; Type=Frameshift; Positions=55, 71; Evidence={ECO:0000305};

    Three dimensional structures from OCA and Proteopedia for IGFBP1 Gene

neXtProt entry for IGFBP1 Gene

Proteomics data for IGFBP1 Gene at MOPED

Post-translational modifications for IGFBP1 Gene

  • Phosphorylated; probably by casein kinase II. Phosphorylation alters the affinity of the protein for IGFs. In amniotic fluid, the unmodified protein is the most abundant form, while mono-, bi-, tri- and tetraphosphorylated forms are present in decreasing amounts. The phosphorylation state may influence the propensity to proteolysis.
  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for IGFBP1 Gene

ENSEMBL proteins:
REFSEQ proteins:

Antibody Products

No data available for DME Specific Peptides for IGFBP1 Gene

Domains & Families for IGFBP1 Gene

Gene Families for IGFBP1 Gene

Graphical View of Domain Structure for InterPro Entry

P08833

UniProtKB/Swiss-Prot:

IBP1_HUMAN :
  • Contains 1 IGFBP N-terminal domain.
Domain:
  • Contains 1 IGFBP N-terminal domain.
  • Contains 1 thyroglobulin type-1 domain.
genes like me logo Genes that share domains with IGFBP1: view

Function for IGFBP1 Gene

Molecular function for IGFBP1 Gene

GENATLAS Biochemistry:
insulin-like growth factor binding protein 1,high affinity,expressed in liver, decidua,kidney and in amniotic fluid,regulator of somatic growth and cellular proliferation,regulated by insulin and corticoids,duplicated in an atypical Silver Russel syndrome
UniProtKB/Swiss-Prot Function:
IGF-binding proteins prolong the half-life of the IGFs and have been shown to either inhibit or stimulate the growth promoting effects of the IGFs on cell culture. They alter the interaction of IGFs with their cell surface receptors. Promotes cell migration.

Gene Ontology (GO) - Molecular Function for IGFBP1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005102 receptor binding TAS 24431302
genes like me logo Genes that share ontologies with IGFBP1: view
genes like me logo Genes that share phenotypes with IGFBP1: view

Animal Models for IGFBP1 Gene

MGI Knock Outs for IGFBP1:

Animal Model Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for IGFBP1 Gene

Localization for IGFBP1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for IGFBP1 Gene

Secreted.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for IGFBP1 Gene COMPARTMENTS Subcellular localization image for IGFBP1 gene
Compartment Confidence
extracellular 5
cytosol 2
nucleus 2
cytoskeleton 1
plasma membrane 1

No data available for Gene Ontology (GO) - Cellular Components for IGFBP1 Gene

Pathways & Interactions for IGFBP1 Gene

genes like me logo Genes that share pathways with IGFBP1: view

SIGNOR curated interactions for IGFBP1 Gene

Is activated by:

Gene Ontology (GO) - Biological Process for IGFBP1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008286 insulin receptor signaling pathway IEA --
GO:0030968 endoplasmic reticulum unfolded protein response TAS --
GO:0036499 PERK-mediated unfolded protein response TAS --
GO:0043567 regulation of insulin-like growth factor receptor signaling pathway IBA --
GO:0044267 cellular protein metabolic process TAS --
genes like me logo Genes that share ontologies with IGFBP1: view

Drugs & Compounds for IGFBP1 Gene

(61) Drugs for IGFBP1 Gene - From: Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials

(42) Additional Compounds for IGFBP1 Gene - From: Novoseek

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
genes like me logo Genes that share compounds with IGFBP1: view

Transcripts for IGFBP1 Gene

mRNA/cDNA for IGFBP1 Gene

Unigene Clusters for IGFBP1 Gene

Insulin-like growth factor binding protein 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for IGFBP1 Gene

No ASD Table

Relevant External Links for IGFBP1 Gene

GeneLoc Exon Structure for
IGFBP1
ECgene alternative splicing isoforms for
IGFBP1

Expression for IGFBP1 Gene

mRNA expression in normal human tissues for IGFBP1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for IGFBP1 Gene

This gene is overexpressed in Liver (x50.0).

Protein differential expression in normal tissues from HIPED for IGFBP1 Gene

This gene is overexpressed in Fetal gut (46.3) and Placenta (10.2).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for IGFBP1 Gene



SOURCE GeneReport for Unigene cluster for IGFBP1 Gene Hs.642938

genes like me logo Genes that share expression patterns with IGFBP1: view

Protein tissue co-expression partners for IGFBP1 Gene

Primer Products

No data available for mRNA Expression by UniProt/SwissProt for IGFBP1 Gene

Orthologs for IGFBP1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for IGFBP1 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia IGFBP1 35
  • 76.45 (n)
  • 69.5 (a)
IGFBP1 36
  • 67 (a)
OneToOne
dog
(Canis familiaris)
Mammalia IGFBP1 35
  • 72.27 (n)
  • 65.98 (a)
IGFBP1 36
  • 63 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Igfbp1 35
  • 75.71 (n)
  • 71.61 (a)
Igfbp1 16
Igfbp1 36
  • 66 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia IGFBP1 35
  • 99.49 (n)
  • 98.84 (a)
IGFBP1 36
  • 99 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Igfbp1 35
  • 75.25 (n)
  • 73.84 (a)
oppossum
(Monodelphis domestica)
Mammalia IGFBP1 36
  • 58 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia IGFBP1 36
  • 49 (a)
OneToOne
chicken
(Gallus gallus)
Aves IGFBP1 35
  • 61.86 (n)
  • 55.46 (a)
IGFBP1 36
  • 43 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia IGFBP1 36
  • 46 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia igfbp1 35
  • 56.91 (n)
  • 50.66 (a)
zebrafish
(Danio rerio)
Actinopterygii igfbp1b 35
  • 56.44 (n)
  • 45.54 (a)
igfbp1a 36
  • 35 (a)
OneToMany
igfbp1b 36
  • 34 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 27 (a)
OneToMany
Species with no ortholog for IGFBP1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for IGFBP1 Gene

ENSEMBL:
Gene Tree for IGFBP1 (if available)
TreeFam:
Gene Tree for IGFBP1 (if available)

Paralogs for IGFBP1 Gene

Paralogs for IGFBP1 Gene

(2) SIMAP similar genes for IGFBP1 Gene using alignment to 5 proteins:

genes like me logo Genes that share paralogs with IGFBP1: view

Variants for IGFBP1 Gene

Sequence variations from dbSNP and Humsavar for IGFBP1 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs4619 - 45,893,070(+) CAGAT(A/G)TATTT reference, missense
rs1065782 - 45,891,959(+) ACAGA(A/G)TCGTA reference, missense
rs41258845 - 45,888,992(+) CTCCC(C/G)ATGCT reference, missense
rs1052652 -- 45,893,195(+) ATATA(C/T)AGTAA utr-variant-3-prime
rs1065780 -- 45,888,078(+) TCTGC(A/G)TTTGA upstream-variant-2KB

Variation tolerance for IGFBP1 Gene

Residual Variation Intolerance Score: 60.6% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 2.05; 37.62% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for IGFBP1 Gene

Human Gene Mutation Database (HGMD)
IGFBP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for IGFBP1 Gene

Disorders for IGFBP1 Gene

MalaCards: The human disease database

(26) MalaCards diseases for IGFBP1 Gene - From: DISEASES, Novoseek, and GeneCards

Disorder Aliases PubMed IDs
ovarian disease
  • ovarian dysfunction
endometriosis
mild pre-eclampsia
  • mild toxemia
pancreatic cancer, childhood
  • pancreatic acinar carcinoma, childhood
hyperandrogenism
  • hyperandrogenization syndrome
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for IGFBP1

Genetic Association Database (GAD)
IGFBP1
Human Genome Epidemiology (HuGE) Navigator
IGFBP1
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
IGFBP1
genes like me logo Genes that share disorders with IGFBP1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for IGFBP1 Gene

Publications for IGFBP1 Gene

  1. Isolation and characterization of a cDNA encoding the low molecular weight insulin-like growth factor binding protein (IBP-1). (PMID: 2461294) Brinkman A. … Drop S.L.S. (EMBO J. 1988) 2 3 4 67
  2. Serum insulin-like growth factor binding protein-1 (IGFBP-1) phosphorylation status in subjects with and without ischaemic heart disease. (PMID: 19732896) Borai A. … Ferns G. (Atherosclerosis 2010) 3 23
  3. Site-specific IGFBP-1 hyper-phosphorylation in fetal growth restriction: clinical and functional relevance. (PMID: 20143870) Abu Shehab M. … Gupta M.B. (J. Proteome Res. 2010) 3 23
  4. Hypoxia and leucine deprivation induce human insulin-like growth factor binding protein-1 hyperphosphorylation and increase its biological activity. (PMID: 18772238) Seferovic M.D. … Gupta M.B. (Endocrinology 2009) 3 23
  5. Insulin-like growth factor-binding protein-1: serum levels, promoter polymorphism, and associations with components of the metabolic syndrome in short subjects born small for gestational age. (PMID: 19158202) van der Kaay D. … Hokken-Koelega A. (J. Clin. Endocrinol. Metab. 2009) 3 23

Products for IGFBP1 Gene

Sources for IGFBP1 Gene

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