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Aliases for IGF2BP2-AS1 Gene

Subcategory (RNA class) for IGF2BP2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for IGF2BP2-AS1 Gene

  • IGF2BP2 Antisense RNA 1 2 3 4 5
  • C3orf65 3 4
  • Chromosome 3 Open Reading Frame 65 2
  • IGF2BP2 Antisense Gene Protein 1 4

External Ids for IGF2BP2-AS1 Gene

Previous HGNC Symbols for IGF2BP2-AS1 Gene

  • C3orf65

Summaries for IGF2BP2-AS1 Gene

GeneCards Summary for IGF2BP2-AS1 Gene

IGF2BP2-AS1 (IGF2BP2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for IGF2BP2-AS1 Gene

Genomics for IGF2BP2-AS1 Gene

Regulatory Elements for IGF2BP2-AS1 Gene

Enhancers for IGF2BP2-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03F185687 1.3 Ensembl ENCODE 12.5 -23.9 -23876 3.1 TBP CREB3L1 JUN ZIC2 ZFHX2 RCOR1 NFE2 FOSL2 FOS CREM IGF2BP2-AS1 IGF2BP2 PIR53085
GH03F185755 0.6 ENCODE 12 +42.6 42580 0.2 ZNF585B IGF2BP2-AS1 MIR548AQ
GH03F185773 1.1 Ensembl ENCODE 12 +61.5 61505 0.7 LEF1 NFIA ZBTB8A FEZF1 REST ZIC2 GATA2 ZNF341 BCL6 ZNF600 IGF2BP2-AS1 IGF2BP2 MIR548AQ
GH03F185769 0.2 ENCODE 12 +56.2 56160 0.2 CTCF USF1 MAX RAD21 RFX5 CHAMP1 ZNF143 SMC3 ZNF652 ZNF654 IGF2BP2-AS1 IGF2BP2 MIR548AQ
GH03F185760 0.2 Ensembl 11.8 +48.6 48573 1.8 ZNF263 IGF2BP2-AS1 MIR548AQ
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around IGF2BP2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for IGF2BP2-AS1 Gene

Chromosome:
3
Start:
185,712,528 bp from pter
End:
185,729,787 bp from pter
Size:
17,260 bases
Orientation:
Plus strand

Genomic View for IGF2BP2-AS1 Gene

Genes around IGF2BP2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
IGF2BP2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for IGF2BP2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for IGF2BP2-AS1 Gene

Proteins for IGF2BP2-AS1 Gene

  • Protein details for IGF2BP2-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96M15-IFAS1_HUMAN
    Recommended name:
    Putative uncharacterized protein IGF2BP2-AS1
    Protein Accession:
    Q96M15

    Protein attributes for IGF2BP2-AS1 Gene

    Size:
    143 amino acids
    Molecular mass:
    15995 Da
    Quaternary structure:
    No Data Available

neXtProt entry for IGF2BP2-AS1 Gene

Post-translational modifications for IGF2BP2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for IGF2BP2-AS1 Gene

Domains & Families for IGF2BP2-AS1 Gene

Protein Domains for IGF2BP2-AS1 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with IGF2BP2-AS1: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for IGF2BP2-AS1 Gene

Function for IGF2BP2-AS1 Gene

Phenotypes for IGF2BP2-AS1 Gene

GenomeRNAi human phenotypes for IGF2BP2-AS1:
genes like me logo Genes that share phenotypes with IGF2BP2-AS1: view

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for IGF2BP2-AS1 Gene

Localization for IGF2BP2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for IGF2BP2-AS1 Gene

Pathways & Interactions for IGF2BP2-AS1 Gene

SuperPathways for IGF2BP2-AS1 Gene

No Data Available

Interacting Proteins for IGF2BP2-AS1 Gene

Gene Ontology (GO) - Biological Process for IGF2BP2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for IGF2BP2-AS1 Gene

Transcripts for IGF2BP2-AS1 Gene

mRNA/cDNA for IGF2BP2-AS1 Gene

(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for IGF2BP2-AS1 Gene

No ASD Table

Relevant External Links for IGF2BP2-AS1 Gene

GeneLoc Exon Structure for
IGF2BP2-AS1
ECgene alternative splicing isoforms for
IGF2BP2-AS1

Expression for IGF2BP2-AS1 Gene

mRNA expression in normal human tissues for IGF2BP2-AS1 Gene

genes like me logo Genes that share expression patterns with IGF2BP2-AS1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for IGF2BP2-AS1 Gene

Orthologs for IGF2BP2-AS1 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for IGF2BP2-AS1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C3orf65 35
  • 65 (a)
OneToOne
Species where no ortholog for IGF2BP2-AS1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for IGF2BP2-AS1 Gene

ENSEMBL:
Gene Tree for IGF2BP2-AS1 (if available)
TreeFam:
Gene Tree for IGF2BP2-AS1 (if available)

Paralogs for IGF2BP2-AS1 Gene

No data available for Paralogs for IGF2BP2-AS1 Gene

Variants for IGF2BP2-AS1 Gene

Sequence variations from dbSNP and Humsavar for IGF2BP2-AS1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs1062903 -- 185,728,024(-) TCTCC(A/G/T)GGGCA intron-variant
rs10699427 -- 185,718,708(+) AAAAA(-/A)GAAAG intron-variant
rs111343732 -- 185,722,103(+) TTTTC(-/T)TTTTT intron-variant
rs111948781 -- 185,713,075(+) ATGTA(-/TG)TGTGT intron-variant, upstream-variant-2KB
rs112658745 -- 185,711,252(+) GTGGT(A/G)CTGAT intron-variant, upstream-variant-2KB

Variation tolerance for IGF2BP2-AS1 Gene

Gene Damage Index Score: 0.50; 10.82% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for IGF2BP2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
IGF2BP2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for IGF2BP2-AS1 Gene

Disorders for IGF2BP2-AS1 Gene

Relevant External Links for IGF2BP2-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
IGF2BP2-AS1

No disorders were found for IGF2BP2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for IGF2BP2-AS1 Gene

Publications for IGF2BP2-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  2. The DNA sequence, annotation and analysis of human chromosome 3. (PMID: 16641997) Muzny D.M. … Gibbs R.A. (Nature 2006) 4 64
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for IGF2BP2-AS1 Gene

Sources for IGF2BP2-AS1 Gene

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