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IGF1 Gene

protein-coding   GIFtS: 69

GC12M102748
insulin-like growth factor 1 (somatomedin C)
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
"" "" "" "" "" "" "" "" "" "" "" "" "" "" "" ""Services    
"" "" "" "" "" "" "" "" "" "" "" "" ""
(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
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Aliases & Descriptions
insulin-like growth factor 1 (somatomedin C)1 2     somatomedin-C2
IGF1A1 2     insulin-like growth factor IB2
Mechano growth factor2 3     insulin-like growth factor IA2
IGF-IB2 3     IGFI2
IGF-IA2 3     Somatomedin-C3
MGF2 3     IBP13

External Ids:    HGNC: 54641   Entrez Gene: 34792   Ensembl: ENSG000000174277   UniProtKB: P013433   UniProtKB: P050193   

Search outside databases for aliases for IGF1 gene

Previous GC identifers: GC12M101888 GC12M101292

(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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Entrez Gene summary for IGF1:
The protein encoded by this gene is similar to insulin in function and structure and is a member of a family of
proteins involved in mediating growth and development. The encoded protein is processed from a precursor, bound by a
specific receptor, and secreted. Defects in this gene are a cause of insulin-like growth factor I deficiency. Several
transcript variants encoding different isoforms have been found for this gene.

UniProtKB/Swiss-Prot: IGF1B_HUMAN, P05019
Function: The insulin-like growth factors, isolated from plasma, are structurally and functionally related to insulin
but have a much higher growth-promoting activity

"" summary for IGF1:
Insulin receptors (IRs) and insulin-like growth factor receptors (IGFRs) are formed from two subunits, each
of which is comprised of an extracellular alpha-subunit and a transmembrane beta-subunit with intracellular
tyrosine kinase activity. IR homodimers are activated by insulin and in adults, mediate an increase in
glucose uptake through upregulation of Glut4 expression. Two isoforms of the IR exist; fetal IR-A and adult
IR-B. IGF1R homodimers are activated by IGF-I and IGF-II and mediate pre- and postnatal growth. IGF2R
sequesters IGF-II and acts to regulate its levels. IR-IGF1R heterodimers exist and, like IGF1R homodimers,
are activated by IGF-I and IGF-II. IRs and IGFRs mediate their intracellular actions through the PI 3-K and
RAS/RAF/MAPK signaling pathways and downstream effectors include mTOR, p70 S6 kinase, ERK and JNK. Many
tumors have altered expression of IGF1R and its ligands and this constitutes an early, possible initiating,
event in tumorigenesis. Decreases in IR signaling causing insulin resistance is a major component in the
development of type 2 diabetes and congenital mutations in the IR can cause the fatal Donohue syndrome.

Gene Wiki entry for IGF1 (Insulin-like growth factor 1)
(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC and Ensembl (release 56), Regulatory elements and Epigenetics data according to SABiosciences)
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Regulatory elements:
"" SABiosciences Regulatory transcription factor binding sites in the IGF1 gene upstream (promoter) region "":
SRF   C/EBPbeta   NF-kappaB1   NF-kappaB   STAT5B   GR-alpha   GR-beta   STAT5A   FOXF2   NF-1   

Epigenetics:
"" Search SABiosciences Methyl-Profiler DNA Methylation qPCR Primer Assays for IGF1 ""

Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 12q22-q23   Ensembl cytogenetic band:  12q23.2   HGNC cytogenetic band: 12q23.2

IGF1 Gene in genomic location: bands according to Ensembl, locations according to "" (and/or Entrez Gene and/or Ensembl if different)
""

GeneLoc gene densities for chromosome 12         GeneLoc Exon Structure

GeneLoc location for GC12M102748:  view genomic region     (about GC identifiers)

Start:
102,789,645 bp from pter
End:
102,874,423 bp from pter
Size:
84,779 bases
Orientation:
minus strand
RefSeq DNA sequence:
NC_000012.11  NT_029419.12  
(According to 1UniProtKB, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene, Novus Biologicals, and/or Sino Biological,
Biochemical Assays by Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 May 2010 and Entrez Gene, Antibodies by Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abnova, OriGene, Novus Biologicals, and/or Epitomics)
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UniProtKB/Swiss-Prot: IGF1A_HUMAN, P01343 (See protein sequence)
Recommended Name: Insulin-like growth factor IA precursor  
Size: 153 amino acids; 17026 Da
Subcellular location: Secreted
PDB structures from "" and Proteopedia "" :
1B9G (3D) ""    1GZR (3D) ""    1GZY (3D) ""    1GZZ (3D) ""    1H02 (3D) ""    1H59 (3D) ""    1IMX (3D) ""    1TGR (3D) ""    
2GF1 (3D) ""    3GF1 (3D) ""    
Alternative splicing: 2 isoforms:  P01343-1   P05019-1   

UniProtKB/Swiss-Prot: IGF1B_HUMAN, P05019 (See protein sequence)

Recommended Name: Insulin-like growth factor IB precursor  
Size: 195 amino acids; 21841 Da
Subcellular location: Secreted
PDB structures from "" and Proteopedia "" :
1BQT (3D) ""    1GF1 (3D) ""    1PMX (3D) ""    1WQJ (3D) ""    2DSP (3D) ""    2DSQ (3D) ""    2DSR (3D) ""    3LRI (3D) ""    
Secondary accessions: B2RWM7
Alternative splicing: 2 isoforms:  P05019-1   P01343-1   

Post-translational modifications:

  • View phosphorylation sites using PhosphoSite2


  • REFSEQ proteins (4 alternative transcripts): 
    NP_000609.1  NP_001104753.1  NP_001104754.1  NP_001104755.1  


    ENSEMBL proteins: 
    ENSP00000337612 ENSP00000302665 ENSP00000376638 ENSP00000416811 ENSP00000376637 ENSP00000394999 
    ENSP00000376639 


    Human Recombinant Proteins 
    ""Millipore Purified and/or Recombinant IGF1 (P01343, P05019) Protein
    ""Sigma-Aldrich Proteins and CompoZr ZFN for IGF1
    ""R&D Systems Recombinant & Natural Proteins for IGF1 (IGF-I)
    ""Browse recombinant and purified proteins available from Enzo Life Sciences
    ""HuPro® and/or Recombinant Proteins from Abnova for IGF1 ""
    "" Origene Purified Recombinant Human Protein: IGF1
    ""Novus Biologicals Proteins for IGF1  ""
    Novus Biologicals Lysate for IGF1
    ""Browse Sino Biological Recombinant Proteins  ""

    4 Gene Ontology (GO) cellular component terms (GO ID links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005576 extracellular region NAS14718574
    GO:0005615 extracellular space IDA7188854 17119061
    GO:0016942 insulin-like growth factor binding protein complex IC10766744
    GO:0031093 platelet alpha granule lumen EXP2752154
    About this table

    "" IGF1 for ontologies           About GeneDecksing



    Antibodies for IGF1: 
    ""Millipore Mono- and Polyclonal Antibodies for the study of IGF1
    ""Sigma-Aldrich Antibodies for IGF1
    ""R&D Systems Antibodies for IGF1 (IGF-I)
    ""Cell Signaling Technology (CST) Antibodies for IGF1  (IGF-1Rbeta)
    ""Monoclonal and Polyclonal Antibodies from Abnova (IGF1)
    ""Browse Origene Antibodies ""
    ""Novus Biologicals Antibodies for IGF1
    ""Browse antibodies at Epitomics

    Assays for IGF1: 
    ""Millipore Kits and Assays for the Analysis of IGF1
    ""Browse ELISAs at Sigma-Aldrich
    ""R&D Systems ELISAs for IGF1 (IGF-I)
    ""Browse Enzo Life Sciences for kits & assays

    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

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    "" IGF1 for domains           About GeneDecksing

    1 InterPro domain/family:
     IPR016179 Insulin-like

    Graphical View of Domain Structure for InterPro Entry P01343
    Graphical View of Domain Structure for InterPro Entry P05019

    ProtoNet protein and cluster: P01343

    1 Blocks protein family: IPB004825 Insulin/IGF/relaxin

    UniProtKB/Swiss-Prot: IGF1A_HUMAN, P01343
    Similarity: Belongs to the insulin family

    UniProtKB/Swiss-Prot: IGF1B_HUMAN, P05019
    Similarity: Belongs to the insulin family

    (According to MGI May 08 2010, UniProtKB, IUBMB,and/or Genatlas,
    shRNA from OriGene, Sigma-Aldrich, RNAi from Millipore, Abnova, siRNAs from Applied Biosystems, Sigma-Aldrich, Clones from Millipore, Sigma-Aldrich, OriGene, Sino Biological, Ontologies according to Gene Ontology Consortium 01 May 2010 via Entrez Gene.)
    About This Section

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    Inhib.
    RNA:
    ""Browse for Gene Knock-down Tools from Millipore
    ""Abnova Chimera RNAi Products for Gene knock-down (IGF1)
    "" Origene 29mer shRNA kits in GFP-retroviral vector (see all 4): IGF1
    Origene shRNA RFP (see all 4): IGF1
    Origene basic RS shRNA (see all 4): IGF1

    ""Applied Biosystems Silencer® siRNAs for IGF1
    ""Sigma-Aldrich siRNA Panels and siRNA for IGF1
    Sigma-Aldrich shRNA Panels and shRNA for IGF1
    Explore Sigma-Aldrich super-pooled esiRNAs
    Clones:""Browse Clones for the Expression of Recombinant Proteins Available from Millipore
    ""Browse iPSC Reprogramming Factors at Sigma-Aldrich
    "" Origene GFP tagged cDNA clones in CMV expression vector (see all 4): IGF1
    Origene Myc/DDK tagged cDNA clones in CMV expression vector (see all 4): IGF1
    Origene untagged cDNA clones in CMV expression vector (see all 6): IGF1
    ""Browse Sino Biological Human cDNA Clones  ""

    UniProtKB/Swiss-Prot: IGF1A_HUMAN, P01343
    Function: The insulin-like growth factors, isolated from plasma, are structurally and functionally related to insulin
    but have a much higher growth-promoting activity

    UniProtKB/Swiss-Prot: IGF1B_HUMAN, P05019
    Function: The insulin-like growth factors, isolated from plasma, are structurally and functionally related to insulin
    but have a much higher growth-promoting activity

    Genatlas biochemistry entry for IGF1:
    insulin-like growth factor 1,expressed in liver,regulator of somatic growth and cellular proliferation,inducer of the
    phosphatidylinositol 3-kinase survival pathway through activation of AKT1,AKT2,inhibited by TNF in its neuroprotective
    role,also inducer of calcineurin mediated signaling and activation of GATA2,associated with intrauterine growth
    retardation and severe short stature in a patient carrying a homozygous deletion of IGF1

    5 Gene Ontology (GO) molecular function terms (GO ID links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005158 insulin receptor binding IPI8452530
    GO:0005159 insulin-like growth factor receptor binding TAS10749889
    GO:0005179 hormone activity IEA--
    GO:0005515 protein binding IPI10766744
    GO:0008083 growth factor activity IEA--
    About this table

    "" IGF1 for ontologies           About GeneDecksing

    Animal Models: 15/17 MGI mutant phenotypes (inferred from 7 alleles""(MGI details for Igf1) (see all 17 ):

    cardiovascular systemcellulargrowth/sizehearing/vestibular/earhomeostasis/metabolism
    lethality-postnatallethality-prenatal/perinatallife span-post-weaning/aginglimbs/digits/tailmuscle
    nervous systemnormalreproductive systemrespiratory systemskeleton

    "" IGF1 for phenotypes           About GeneDecksing

    (Pathways according to Millipore, Cell Signaling Technology, Sigma-Aldrich, Applied Biosystems GeneAssist, KEGG and/or UniProtKB, (map by GeneGo),
    Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 May 2010 via Entrez Gene).
    About This Section

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    "" IGF1 for pathways           About GeneDecksing

    5/10 "" Millipore Pathways for IGF1 (see all 10 )
      ""  Transcription Androgen Receptor nuclear signaling
    Signal transduction PTEN pathway
    Development Ligand-independent activation of ESR1 and ESR2
    G-protein signaling RhoA regulation pathway
    Development IGF-RI signaling

    5/16 "" Sigma-Aldrich "Your Favorite Gene" Pathways for  IGF1  (Your Favorite Gene powered by Ingenuity) (see all 16 )
      ""  Glioblastoma Multiforme Signaling
    RhoA Signaling
    Growth Hormone Signaling
    Glioma Signaling
    Axonal Guidance Signaling

    5/53 "" GeneAssist Pathways for IGF1 (see all 53 )
      ""  Glioma Invasiveness
    Nanog in Mammalian ESC Pluripotency
    ERK Signaling
    CREB Pathway
    Telomerase Components in Cell Signaling

    5/13 "" Kegg Pathways  (Kegg details for IGF1) (see all 13 ):
      ""  hsa04114 Oocyte meiosis
    hsa04115 p53 signaling pathway
    hsa04150 mTOR signaling pathway
    hsa04510 Focal adhesion
    hsa04730 Long-term depression

    "" SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for IGF1

    5/81 Interacting proteins for IGF1 (ENSP000003026653 P050192) via UniProtKB, MINT, and/or STRING (see all 81 ""
    InteractantInteraction Details
    GeneCardExternal ID(s)
    IGFBP3ENSP000003704733STRING: ENSP00000370473
    IGFBP4ENSP000002695933STRING: ENSP00000269593
    IGFBP5ENSP000002338133STRING: ENSP00000233813
    IGFBP1ENSP000002755253STRING: ENSP00000275525
    IGF1RENSP000002680353STRING: ENSP00000268035
    About this table

    5/48 Gene Ontology (GO) biological process terms (GO ID links to tree view) (see all 48 ):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0001501 skeletal system development TAS10448861
    GO:0006260 DNA replication TAS10766744
    GO:0006916 anti-apoptosis IDA16942485
    GO:0006928 cellular component movement TAS10766744
    GO:0007165 signal transduction TAS10448861
    About this table

    "" IGF1 for ontologies           About GeneDecksing


    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
    About This Section

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    "" IGF1 for compounds           About GeneDecksing

    "" Enzo Life Sciences drugs & compounds for IGF1
    ""Sigma-Aldrich Small Molecules for IGF1:
    Small Molecule - Inhibitor

    "" Compounds for IGF1 available from Tocris Bioscience
    CompoundAction CAS number
    Demethylasterriquinone B1Selective insulin RTK activator[78860-34-1]
    PQ 401IGF1R inhibitor[196868-63-0]
    About this table


    10/1260 ""Novoseek chemical compound relationships for IGF1 gene (see all 1260 )
    Compound   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
    pegvisomant 100.00 191 17077131 (7), 20009494 (5), 18498055 (5), 17289896 (5) (see all 100)
    octreotide 100.00 434 1547711 (8), 7535670 (7), 15994747 (7), 19141605 (6) (see all 100)
    estradiol 91.94 885 9814485 (10), 9626134 (8), 7704427 (6), 2171908 (6) (see all 100)
    dehydroepiandrosterone sulfate 86.93 280 10698044 (13), 17381481 (9), 10821876 (8), 9100552 (7) (see all 100)
    lanreotide 82.32 116 8921789 (5), 10090136 (5), 15789272 (4), 10468985 (4) (see all 66)
    ly294002 79.59 190 19855934 (4), 11228049 (4), 9139803 (3), 9838099 (2) (see all 100)
    wortmannin 55.48 185 19855934 (4), 9139803 (3), 7615073 (3), 12032677 (3) (see all 100)
    testosterone 39.95 1149 7486812 (10), 1315260 (10), 15240605 (8), 10514558 (8) (see all 100)
    pd 98059 35.13 136 9261137 (4), 19937471 (4), 12843192 (4), 11228049 (4) (see all 100)
    phosphatidylinositol 32.52 377 8666135 (6), 9886492 (5), 1311242 (5), 11316733 (4) (see all 100)
    About this table


    (GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 223 Homo sapiens; Apr 2 2010) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView,
    non coding RNAs according to RNAdb,
    ESTs according to GeneTide,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from Millipore and/or Abnova,
    siRNAs from Applied Biosystems, Sigma-Aldrich,
    shRNA from Sigma-Aldrich, OriGene, microRNA from SABiosciences,
    Tagged/untagged cDNA clones from OriGene, Primers from OriGene and/or SABiosciences,
    Expression Assays from Applied Biosystems)
    About This Section

      User Feedback
    Inhib.
    RNA:
    ""Browse for Gene Knock-down Tools from Millipore
    ""Abnova Chimera RNAi Products for Gene knock-down (IGF1)
    ""Applied Biosystems Silencer® siRNAs:  NM_000618  NM_001111283  NM_001111284  NM_001111285  
    "" Origene 29mer shRNA kits in GFP-retroviral vector (see all 4): IGF1
    Origene shRNA RFP (see all 4): IGF1
    Origene basic RS shRNA (see all 4): IGF1

    ""Sigma-Aldrich siRNA Panels and siRNA for IGF1
    Sigma-Aldrich shRNA Panels and shRNA for IGF1
    Explore Sigma-Aldrich super-pooled esiRNAs

    microRNA:""10/24 SABiosciences microRNAs that regulate IGF1 (see all 24 ): ""
    hsa-miR-320a hsa-miR-142-5p hsa-miR-495 hsa-miR-496 hsa-miR-29c hsa-miR-29a hsa-miR-30a* hsa-miR-486-5p hsa-miR-186 hsa-miR-613
    Assays:  ""Applied Biosystems TaqMan® Gene Expression Assays:  
    NM_000618  NM_001111283  NM_001111284  NM_001111285  


    Clones:"" Origene GFP tagged cDNA clones in CMV expression vector (see all 4): IGF1
    Origene Myc/DDK tagged cDNA clones in CMV expression vector (see all 4): IGF1
    Origene untagged cDNA clones in CMV expression vector (see all 6): IGF1
    Primers:"" Origene genome-wide validated SYBR primer pairs: IGF1
    ""SABiosciences RT2 qPCR Primer Assay for IGF1: PPH00167A ""

    REFSEQ mRNAs for IGF1 gene (4 alternative transcripts): 

    NM_000618.3  NM_001111283.1  NM_001111284.1  NM_001111285.1  

    Additional cDNA sequence: 

    AB209184.1 AK312231.1 BC148266.1 BC152321.1 CR541861.1 M11568.1 M27544.1 M29644.1 
    M37484.1 U40870.1 X00173.1 X56773.1 X56774.1 X57025.1 

    7 DOTS entries:

    DT.454558  DT.92461093  DT.100680034  DT.75105093  DT.95275111  DT.100659724  DT.40304132 

    24/161 AceView cDNA sequences (see all 161 ):

    AA703492 X56774 BE044197 BF222309 AA640354 AW517507 AW102819 AU118321 
    BQ024203 AI457887 BF445871 BF589728 AW204378 BQ773809 M37484 AI248089 
    AA580109 BQ787248 U40870 AA723451 CR541861 AL709516 AI478804 H88012 

    "" highest scoring ESTs for IGF1:

    X57025 AA041267 AA128498 AL599807 AL603526 AL708718 AL709516 AL710591 AW022660 BF091004 

    Unigene Cluster for IGF1:

    Insulin-like growth factor 1 (somatomedin C)
    Hs.160562  [show with all ESTs]
    Unigene Representative Sequence: NM_001111283


    GeneLoc Exon Structure

    8 Ensembl transcripts including schematic representations:
    ENST00000337514  ENST00000307046  ENST00000392905  ENST00000424202  ENST00000392904  ENST00000481539  
    ENST00000456098  ENST00000392906  
    (Experimental results according to 1GeneNote and GNF BioGPS,
    probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 223 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
    Expression Assays from Applied Biosystems, Primers from OriGene and/or SABiosciences )
    About This Section

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    IGF1 expression in normal and diseased human tissues

    "" Applied Biosystems TaqMan ® Gene Expression Assays for IGF1

    1""  / 2""  / 3""

    13 probe-sets matching IGF1 gene

    Affymetrix
    probe-set
    Array  GeneAnnot data GeneNote data GeneTide data
    # genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank
    1975_s_at2, 3 U95-A 1 1.00 1.00 0.80 1.16 X03563 0.20 1.00 0.72 1
    1501_at2, 3 U95-A 1 0.88 1.00 0.96 1.08 X57025 1.00 1.00 1.00 1
    64305_s_at2, 3 U95-C 1 0.88 1.00 0.38 0.95 AW022660 0.80 1.00 0.91 1
    38737_at2, 3 U95-A 1 0.75 1.00 0.97 0.85 M14156 0.20 1.00 0.72 1
    1625_at2, 3 U95-A 1 0.62 1.00 0.82 0.39 HG2309-HT2405 0.20 1.00 0.72 1
    211577_s_at2, 3 U133-A 1 1.00 1.00 -- -- M37484 0.60 1.00 0.82 1
    209540_at2, 3 U133-A 1 1.00 1.00 -- -- AU144912 0.40 1.00 0.76 1
    209542_x_at2, 3 U133-A 1 0.91 1.00 -- -- M29644 0.80 1.00 0.91 1
    209541_at2, 3 U133-A 1 0.73 1.00 -- -- AI972496 0.20 1.00 0.72 1
    211577_s_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --
    209540_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --
    209542_x_at2 U133Plus2 1 0.91 1.00 -- -- -- -- -- -- --
    209541_at2 U133Plus2 1 0.73 1.00 -- -- -- -- -- -- --
    About this table

    "" IGF1 for expression           About GeneDecksing

    Data from Genenote  (Publications) and GNF BioGPS
        About these images
    About these images

    CGAP SAGE TAG: --

    SOURCE GeneReport for Unigene cluster: Hs.160562

    Expression variation in blood from EXPOLDB for IGF1

    Primers:"" Origene genome-wide validated SYBR primer pairs: IGF1 ""
    ""SABiosciences RT2 qPCR Primer Assay for IGF1: PPH00167A ""
    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI May 08 2010, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
    About This Section

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    Orthologs for IGF1 gene from 5/9 species (see all 9 )
    Organism Gene Locus Description Human
    Similarity
    NCBI accessions
    dog
    (Canis familiaris)
    IGF11   -- insulin-like growth factor 1 (somatomedin C) 93.68(n)
    97.39(a)
    610255  XM_848024.1  XP_853117.1 
    chimpanzee
    (Pan troglodytes)
    IGF11   -- insulin-like growth factor 1 (somatomedin C) 100(n)
    100(a)
    741055  XM_001156521.1  XP_001156521.1 
    cow
    (Bos taurus)
    IGF11   -- insulin-like growth factor 1 (somatomedin C) 93.46(n)
    96.08(a)
    281239  XM_001251168.1  XP_001251169.1 
    rat
    (Rattus norvegicus)
    Igf11   -- insulin-like growth factor 1 87.93(n)
    92.91(a)
    24482  NM_178866.2  NP_849197.1 
    mouse
    (Mus musculus)
    Igf11, 5 10 (48.00 cM)5
    insulin-like growth factor 11, 5 85.47(n)1
    89.74(a)1
    160001  NM_184052.21  NP_908941.11 
     AA5449555  AF4406945  (see all 21)
    About this table        Species with no ortholog for IGF1

    ENSEMBL Gene Tree for IGF1
    (Paralogs according to 1HomoloGene
    and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
    About This Section

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    Paralogs for IGF1 gene
    IGF22  

    "" IGF1 for paralogs           About GeneDecksing


    (SNPs according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Genotyping Reagents from Applied Biosystems)
    About This Section

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    10/724 NCBI SNPs in IGF1 are shown (see all 724 )
    (Click "" for Applied Biosystems TaqMan ® Genotyping Assay)  (see all 258)
    ABGenomic DataTranscription Related DataAllele Frequencies
    SNP IDValidChr 12 posSequenceRecsAA
    Chg
    TypeMoreRecsAllele
    freq
    PopTotal
    sample
    More
    ------------
    ""
    rs62201,2
    C,F,O,A,H102794515(+) TAAACA/GAGGTT 3 -- ut31""20Minor allele frequency- G:0.37MN NA EA NS WA 1250""
    ""
    rs357671,2
    C,F,O,A,H99935100(-) TCATGC/TGGAAA 3 -- ng51""31Minor allele frequency- T:0.30MN NS EA NA 3228""
    ""
    rs57426121,2
    C,F,A,H99934397(-) ACACCT/CCTCAC 3 -- ng51""35Minor allele frequency- C:0.13NS NA MN EA WA 3074""
    ""
    rs62141,2
    C,F,A,H102793569(-) TTAACG/ATGTTT 3 -- ut31 ese3""28Minor allele frequency- A:0.48MN NS EA NA WA 2393""
    ""
    rs118297071,2
    C,F,A,H99934659(+) AACCtG/Ctgtgt 3 -- ng51""6Minor allele frequency- C:0.03NS EA WA NA 472""
    --
    rs118296931,2
    C,F,A,H99934788(+) CCTCTC/TGAGGG 3 -- ng51""10Minor allele frequency- T:0.03NS NA WA 859""
    ""
    rs62191,2
    C,F,O,A102790192(-) CTCAAA/GCTGTC 3 -- ut31 ese3""23Minor allele frequency- N:0.00MN NS EA NA 1921""
    ""
    rs57427111,2
    C,F,H102791083(-) CTGCCT/GCAGAA 3 -- ut31 ese3""7Minor allele frequency- G:0.01NS EA 680""
    ""
    rs57427141,2
    C,F,A102789852(-) ATTCTG/CATTGT 3 -- ut31""16Minor allele frequency- C:0.13NS MN EA NA WA 1288""
    ""
    rs37302051,2
    C,F,H102791749(-) AACTAT/CAGGCT 3 -- ut31""6Minor allele frequency- C:0.01NS EA 504""
    About this table

    HapMap Linkage Disequilibrium images for IGF1 (up to first 250kb)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)  ""
    Database of Genomic Variants (DGV): 1 variation for IGF1
         1 Indel: 58548

    (in which this Gene is Involved, According to OMIM, UniProtKB, Novoseek, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, LSDB, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
    About This Section

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    "" IGF1 for disorders           About GeneDecksing

    OMIM: 147440   disorders: 608747  

    UniProtKB/Swiss-Prot: IGF1B_HUMAN, P05019

  • Defects in IGF1 are the cause of insulin-like growth factor I deficiency (IGF1 deficiency) [MIM:608747]. IGF1
  • deficiency is an autosomal recessive disorder characterized by growth retardation, sensorineural deafness and mental
    retardation
  • Defects in IGF1 are the cause of insulin-like growth factor I deficiency (IGF1 deficiency) [MIM:608747]. IGF1
  • deficiency is an autosomal recessive disorder characterized by growth retardation, sensorineural deafness and mental
    retardation

    10/1676 ""Novoseek disease relationships for IGF1 gene (see all 1676 )

    Disease   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
    acromegaly 100.00 813 17575366 (7), 12100070 (7), 17047383 (6), 9231047 (5) (see all 100)
    deficiency; growth hormone 100.00 195 9272100 (7), 9078817 (6), 19381505 (6), 15583470 (6) (see all 100)
    laron syndrome 100.00 209 19117781 (5), 9509072 (4), 9030966 (4), 8265812 (4) (see all 100)
    gh deficiency 100.00 570 9801991 (13), 9689828 (8), 10941424 (8), 9042120 (7) (see all 100)
    igf-i resistance 100.00 67 8809343 (3), 15476454 (3), 10198399 (3), 8964861 (2) (see all 52)
    dwarf 64.22 228 15888324 (6), 9578506 (4), 9176194 (4), 9000465 (4) (see all 100)
    idiopathic short stature 60.43 83 11966736 (8), 10848878 (8), 14725676 (4), 11155089 (4) (see all 50)
    short stature 57.87 181 9740270 (3), 9713560 (3), 3331010 (3), 2626840 (3) (see all 100)
    growth failure 42.85 93 7794630 (3), 2591131 (3), 2155253 (2), 19717008 (2) (see all 80)
    catabolic state 41.48 53 16500651 (3), 17622956 (2), 1371669 (2), 9817989 (1) (see all 49)
    About this table

    Locus Specific Mutation Databases: IGF1
    Human Gene Mutation Database: IGF1
    Genetic Association Database: IGF1
    Human Genome Epidemiology Navigator: IGF1 (236 documents)
    Tumor Gene Database: IGF1

    (Possibly Related Articles in Doctor's Guide)
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      --

    (in PubMed. Associations of this gene to articles via 1Novoseek, 2HGNC, 3Entrez Gene, 4UniProtKB/Swiss-Prot, 5UniProtKB/TrEMBL, 6GAD, and/or 7PharmGKB)
    About This Section

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    10/8091 PubMed articles for IGF1 gene (see all 8091 ):
    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section

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     ANDOR
    Aliases
    Disorders
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)
    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 3479 HGNC: 5464 AceView: IGF1 Ensembl:ENSG00000017427 euGenes: HUgn3479
    ECgene: IGF1 Kegg: 3479 H-InvDB: IGF1
    (According to HUGE)
    About This Section

      User Feedback
      --
    (According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
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    NameDescription
    ATLAS Chromosomes in Cancer entry for IGF1 Genetics and Cytogenetics in Oncology and Haematology
    Mammary Transgene Database entry for IGF1More genetic and clinical information
    NIEHS-SNPshttp://egp.gs.washington.edu/data/igf1/
    SHMPDhttp://shmpd.bii.a-star.edu.sg/gene.php?genestart=A&genename=HLA-DQB1
    Wikipedia http://en.wikipedia.org/wiki/Insulin-like_growth_factor_1
    SHMPDhttp://shmpd.bii.a-star.edu.sg/gene.php?genestart=A&genename=HLA-DQB1
    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from XenneX, Inc.)
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    Patent Information for IGF1 gene: ""
    Search GeneIP for patents involving IGF1

    GeneCards and IP: ""
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search


    (Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Novus Biologicals,
    Epitomics, Sigma-Aldrich, R&D Systems, SABiosciences, Millipore, Abnova,
    Clones available from OriGene, Sigma-Aldrich, Sino Biological, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience)
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    ""
    ""
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