IGDCC3 Gene
protein-coding GIFtS : 49
GCID: GC15 M065619
immunoglobulin superfamily, DCC subclass, member 3 (Previous name: putative neuronal cell adhesion molecule ) (Previous symbol: PUNC )
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Aliasesfor IGDCC3 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases Immunoglobulin Superfamily, DCC Subclass, Member 3 1 2 PUNC1 2 3 5 Putative Neuronal Cell Adhesion Molecule1 2 3 HsT188801 2 Immunoglobulin Superfamily DCC Subclass Member 32
Export aliases for IGDCC3 gene to outside databases Previous GC identifers: GC15M063406 GC15M042443
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Summariesfor IGDCC3 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section --
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Genomic Viewsfor IGDCC3 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000015.9 NC_018926.1 NT_010194.17 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the IGDCC3 gene promoter: AREB6 STAT1 NRSF form 1 STAT3 POU3F2 (N-Oct-5b) POU3F2 (N-Oct-5a) AP-4 NRSF form 2 POU3F2 Other transcription factors Search SABiosciences Chromatin IP Primers for IGDCC3 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat IGDCC3
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 15q22.3-q23 Ensembl cytogenetic band: 15q22.31 HGNC cytogenetic band: 15q22.3-q23 IGDCC3 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 15 GeneLoc Exon Structure
GeneLoc location for GC15M065619: view genomic region
(about GC identifiers )
Start:
65,619,465 bp from pter
End:
65,670,378 bp from pter
Size:
50,914 bases
Orientation:
minus strand
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Proteinsfor IGDCC3 gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: IGDC3_HUMAN, Q8IVU1 (See
protein sequence )Recommended Name: Immunoglobulin superfamily DCC subclass member 3 precursor Size : 814 amino acids; 86724 Da
Subcellular location : Membrane; Single-pass type I membrane protein
Secondary accessions : O95215Explore the universe of human proteins at neXtProt for IGDCC3: NX_Q8IVU1 Post-translational modifications:
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_Q8IVU1 IGDCC3 Protein expression data from MOPED and PaxDb : About this image REFSEQ proteins: NP_004875.2 ENSEMBL proteins: ENSP00000332773 ENSP00000454105 ENSP00000452838 Human Recombinant Protein Products for IGDCC3: Gene Ontology (GO): 1 cellular component term (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0005887 integral to plasma membrane
IEA --
IGDCC3 for ontologies About GeneDecksing IGDCC3 Antibody Products: Assay Products for IGDCC3:
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Protein
Domains / Familiesfor IGDCC3 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
IGDCC3 for domains About GeneDecksing 5 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry Q8IVU1 ProtoNet protein and cluster: Q8IVU1
2 Blocks protein families : IPB003598 Immunoglobulin C-2 type IPB003599 Immunoglobulin subtype UniProtKB/Swiss-Prot: IGDC3_HUMAN, Q8IVU1 Similarity : Belongs to the immunoglobulin superfamily. DCC familySimilarity : Contains 2 fibronectin type-III domainsSimilarity : Contains 4 Ig-like C2-type (immunoglobulin-like) domains
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Functionfor IGDCC3 gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
inGenious Targeting Laboratory ,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase ,
shRNA from
OriGene ,
Sirion Biotech ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Sirion Biotech ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
Sirion Biotech ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Phenotypes: 2 GenomeRNAi human phenotypes for IGDCC3 : 1 MGI mutant phenotype (inferred from 3 alleles ) (MGI details for Igdcc3) :
IGDCC3 for phenotypes About GeneDecksing Animal Models: Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for IGDCC3 (see all 2 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for IGDCC3 (see all 2 )OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: IGDCC3 (NM_004884 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for IGDCC3 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat IGDCC3
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for IGDCC3
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Pathways & Interactionsfor IGDCC3 gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Interactions: Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for IGDCC3 STRING Interaction
Network Preview (showing 2 interactants - click image to see more details)2 Interacting proteins for IGDCC3 (Q8IVU1 3 ENSP00000332773 4 ) via UniProtKB, MINT, STRING , and/or I2D About this table Gene Ontology (GO): 1 biological process term (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0050885 neuromuscular process controlling balance
IEA --
IGDCC3 for ontologies About GeneDecksing
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Drugs & Compoundsfor IGDCC3 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for IGDCC3 Search CenterWatch for drugs/clinical trials and news about IGDCC3 / IGDC3
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Transcriptsfor IGDCC3 gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
Sirion Biotech ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for IGDCC3 gene: NM_004884.3 Unigene Cluster for IGDCC3:
Immunoglobulin superfamily, DCC subclass, member 3 Hs.128292 [show with all ESTs ] Unigene Representative Sequence: NM_004884 5 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000327987 (uc002aos.2 uc002aor.1 ) ENST00000558354 ENST00000559231 ENST00000559058 ENST00000559947 Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for IGDCC3 (see all 2 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for IGDCC3 (see all 2 )OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: IGDCC3 (NM_004884 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for IGDCC3 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat IGDCC3
Additional cDNA sequence: AF063936.1 AK095529.1 BC042054.1 BC067107.1
7 DOTS entries : DT.97788800 DT.100019445
DT.306344 DT.308680 DT.102827139 DT.40266764 DT.97858000 24/53 AceView cDNA sequences (see all 53 ):
BQ650842 BF515654 BE252669 CR623830 BX331927 BQ644258 AW235450 BQ646105 BF312550 D80658 BC042054 BV194295 AW204060 D80574 AA973158 AA953395 BX093294 BC067107 BX389424 AK095529 AI740721 AF063936 BG329402 BM726906 GeneLoc Exon Structure 5/6 Alternative Splicing Database (ASD) splice patterns (SP) for IGDCC3 (see all 6 ) About this scheme ExUns: 1 ^ 2a · 2b ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8a · 8b ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 ^ 14a · 14b ^ 15 ^ 16 ^ 17 ^ 18 ^ 19a · 19b SP1 :       -   -   -           -                           SP2 :           -           -                           SP3 :                                               SP4 :                                               SP5 :                                              
ECgene alternative splicing isoforms for IGDCC3
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Expression for IGDCC3 gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section IGDCC3 expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: ACTTGGAACTAbout this image IGDCC3 expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table
See IGDCC3 Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for IGDCC3 SOURCE GeneReport for Unigene cluster: Hs.128292 SABiosciences Custom PCR Arrays for IGDCC3 Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for IGDCC3Browse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat IGDCC3 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat IGDCC3 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat IGDCC3 In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for IGDCC3
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Orthologsfor IGDCC3 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of animals.
Orthologs for IGDCC3 gene from 4/12 species (see all 12 ) About this table
Organism
Taxonomic classification
Gene
Description
Human Similarity
Orthology Type
Details
chicken (Gallus gallus)
Aves
IGDCC31
immunoglobulin superfamily, DCC subclass, member 3
69.62(n) 67.93(a)
 
415535 XM_413904.3 XP_413904.2
lizard (Anolis carolinensis)
Reptilia
IGDCC36
--
77(a)
1 ↔ 1
1(194518537-194551085)
zebrafish (Danio rerio)
Actinopterygii
igdcc31
immunoglobulin superfamily, DCC subclass, member 3
65.67(n) 65.37(a)
 
555947 XM_003198969.1 XP_003199017.1
honey bee (Apis mellifera)
Insecta
--
--
14(a)
1 → many
Group4.19(39194-45176)
ENSEMBL Gene Tree for IGDCC3 (if available)TreeFam Gene Tree for IGDCC3 (if available)
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Paralogsfor IGDCC3 gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for IGDCC3 gene CDON 2 ROBO2 2 NEO1 2 ROBO1 2 ROBO4 2 IGDCC4 2 BOC 2 DCC 2 PRTG 2 ROBO3 2 15 SIMAP similar genes for IGDCC3 using alignment to 3 protein entries: IGDC3_HUMAN (see all proteins ):PRTG MUSK DCC PTPRS HMCN2 PXDN HSPG2 PTPRD ROBO3 SDK1 IGLV3-16 IGLV3-25 V2-7 PAPLN PXDNL
IGDCC3 for paralogs About GeneDecksing 1 Pseudogenes.org Pseudogene for IGDCC3 PGOHUM00000262135
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Genomic Variantsfor IGDCC3 gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 15 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for IGDCC3 (65619465 - 65670378 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV): 1 variation for IGDCC3 1 CNV : 72268
SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing IGDCC3
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Disorders
/ Diseasesfor IGDCC3 gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
IGDCC3 for disorders About GeneDecksing
OMIM gene information: 604184
OMIM disorders : --2 diseases for IGDCC3 : About MalaCards bardet-biedl syndrome neuronitis Human Genome Epidemiology (HuGE) Navigator: IGDCC3 (1 document)Export disorders for IGDCC3 gene to outside databases
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Publicationsfor IGDCC3 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for IGDCC3 gene integrated from 9 sources : (articles sorted by number of sources associating them with IGDCC3) Utopia : connect your pdf to the dynamic world of online information
Genomic structure and chromosomal localization of the mouse gene Punc. (PubMed id 9922388) 1 , 2 , 3 Salbaum J.M. (1999) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 1 , 2 Gerhard D.S....Malek J. (2004) Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PubMed id 20379614) 1 Rose J.E....Uhl G.R. (2010) Analysis of the DNA sequence and duplication history of human chromosome 15. (PubMed id 16572171) 2 Zody M.C....Nusbaum C. (2006) Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039) 1 Ota T.... Sugano S. (2004) Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932) 1 Strausberg R.L....Marra M.A. (2002) Protein-protein interaction panel using mouse full-length cDNAs. (PubMed id 11591653) 1 Suzuki H....Hayashizaki Y. (2001)
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External Searches for IGDCC3 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing IGDCC3 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing IGDCC3 gene
(According to HUGE )
About This Section --
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Specialized Databases showing IGDCC3 gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for IGDCC3 Pharmacogenomics, SNPs, Pathways
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About This Section Patent Information for IGDCC3 gene: Search GeneIP for patents involving IGDCC3 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor IGDCC3 gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 and Sirion Biotech , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript , LifeMap BioReagents , and Sirion Biotech , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences , In Situ Hybridization Assays from Advanced Cell Diagnostics , Animal models from inGenious Targeting Laboratory )About This Section
Browse OriGene Antibodies OriGene shRNA RFP for IGDCC3 OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for IGDCC3 OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for IGDCC3 Browse OriGene Protein Over-expression Lysates Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for IGDCC3 OriGene 3'-UTR Clone for IGDCC3 OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for IGDCC3 OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for IGDCC3 Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs Browse OriGene full length recombinant human proteins expressed in human HEK293 cells OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for IGDCC3 OriGene Custom Protein Services for IGDCC3 OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat IGDCC3 QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing IGDCC3 QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat IGDCC3 QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat IGDCC3 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat IGDCC3 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat IGDCC3
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IGDCC3 Proteins, Antibodies, CLIAs, and ELISAs
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for IGDCC3
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Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat IGDCC3
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Aliases for IGDCC3
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Disorders / Diseases for IGDCC3
Domains / Families for IGDCC3
Drugs / Compounds for IGDCC3
Expression for IGDCC3
Function for IGDCC3
Genomic Views for IGDCC3
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