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Aliases for IGBP1P1 Gene

Aliases for IGBP1P1 Gene

  • Immunoglobulin (CD79A) Binding Protein 1 Pseudogene 1 2 3 5
  • Chromosome 14 Open Reading Frame 19 2
  • C14orf19 3

External Ids for IGBP1P1 Gene

Previous HGNC Symbols for IGBP1P1 Gene

  • C14orf19

Previous GeneCards Identifiers for IGBP1P1 Gene

  • GC14P035408

Summaries for IGBP1P1 Gene

GeneCards Summary for IGBP1P1 Gene

IGBP1P1 (Immunoglobulin (CD79A) Binding Protein 1 Pseudogene 1) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for IGBP1P1 Gene

Genomics for IGBP1P1 Gene

Regulatory Elements for IGBP1P1 Gene

Enhancers for IGBP1P1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH14G034872 1.4 ENCODE dbSUPER 6 -64.9 -64931 4.2 MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 NFYC ENSG00000258738 PPP2R3C FAM177A1 SRP54 IGBP1P1 KIAA0391 BAZ1A
GH14G034867 1.1 dbSUPER 6 -71.4 -71449 1.6 FOXA2 MLX ARID4B SIN3A DMAP1 YY1 SLC30A9 PAF1 SP5 NFYC ENSG00000258738 PPP2R3C SRP54 IGBP1P1 PSMA6 RNU7-41P
GH14G034884 0.9 FANTOM5 6.5 -55.0 -55022 0.2 HNRNPUL1 NFRKB ZNF48 THRB RARA YY1 CREM MIXL1 HMG20B SP5 CFL2 BAZ1A IGBP1P1 KIAA0391 ENSG00000258493
GH14G034860 0.9 dbSUPER 5.9 -77.6 -77593 1.6 ATF1 FUS ZFP64 ARID4B ZSCAN9 DNMT3B ZNF48 RARA ZNF335 FOS SNX6 FAM177A1 ENSG00000258738 IGBP1P1 RNU7-41P
GH14G034138 1.2 Ensembl ENCODE 4.2 -799.6 -799586 1.6 FOXA2 ARID4B DMAP1 ZNF48 SP5 MXD4 KAT8 MIER3 ZSCAN16 RCOR2 IGBP1P1 LOC105370444 LOC102724945
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around IGBP1P1 on UCSC Golden Path with GeneCards custom track

Genomic Location for IGBP1P1 Gene

Chromosome:
14
Start:
34,939,324 bp from pter
End:
34,940,496 bp from pter
Size:
1,173 bases
Orientation:
Plus strand

Genomic View for IGBP1P1 Gene

Genes around IGBP1P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
IGBP1P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for IGBP1P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for IGBP1P1 Gene

Proteins for IGBP1P1 Gene

Post-translational modifications for IGBP1P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for IGBP1P1 Gene

Domains & Families for IGBP1P1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for IGBP1P1 Gene

Function for IGBP1P1 Gene

Phenotypes for IGBP1P1 Gene

genes like me logo Genes that share phenotypes with IGBP1P1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for IGBP1P1 Gene

Localization for IGBP1P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for IGBP1P1 Gene

Pathways & Interactions for IGBP1P1 Gene

SuperPathways for IGBP1P1 Gene

No Data Available

Interacting Proteins for IGBP1P1 Gene

Gene Ontology (GO) - Biological Process for IGBP1P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for IGBP1P1 Gene

Transcripts for IGBP1P1 Gene

mRNA/cDNA for IGBP1P1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for IGBP1P1 Gene

No ASD Table

Relevant External Links for IGBP1P1 Gene

GeneLoc Exon Structure for
IGBP1P1
ECgene alternative splicing isoforms for
IGBP1P1

Expression for IGBP1P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for IGBP1P1 Gene

NURSA nuclear receptor signaling pathways regulating expression of IGBP1P1 Gene:

IGBP1P1

SOURCE GeneReport for Unigene cluster for IGBP1P1 Gene:

Hs.639271
genes like me logo Genes that share expression patterns with IGBP1P1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for IGBP1P1 Gene

Orthologs for IGBP1P1 Gene

Evolution for IGBP1P1 Gene

ENSEMBL:
Gene Tree for IGBP1P1 (if available)
TreeFam:
Gene Tree for IGBP1P1 (if available)

No data available for Orthologs for IGBP1P1 Gene

Paralogs for IGBP1P1 Gene

No data available for Paralogs for IGBP1P1 Gene

Variants for IGBP1P1 Gene

Sequence variations from dbSNP and Humsavar for IGBP1P1 Gene

SNP ID Clin Chr 14 pos Sequence Context AA Info Type
rs1000649421 -- 34,940,930(+) TCCCA(C/T)ATTTA intron-variant, downstream-variant-500B
rs1003088154 -- 34,939,082(+) GATCT(A/C)ATAAG intron-variant, nc-transcript-variant, upstream-variant-2KB
rs1003495310 -- 34,940,173(+) ATAGC(C/T)AAGGC intron-variant, nc-transcript-variant
rs1004138107 -- 34,940,869(+) GCCTG(A/G)GTGAC intron-variant, downstream-variant-500B
rs1006943102 -- 34,938,653(+) ACAGG(C/G)GCCCA intron-variant, downstream-variant-500B, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for IGBP1P1 Gene

Variant ID Type Subtype PubMed ID
dgv1867n100 CNV gain 25217958
esv3892499 CNV loss 25118596
nsv1041857 CNV gain 25217958
nsv483012 CNV gain+loss 15286789
nsv564200 CNV gain 21841781
nsv976328 CNV duplication 23825009

Relevant External Links for IGBP1P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
IGBP1P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for IGBP1P1 Gene

Disorders for IGBP1P1 Gene

Relevant External Links for IGBP1P1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
IGBP1P1

No disorders were found for IGBP1P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for IGBP1P1 Gene

Publications for IGBP1P1 Gene

  1. Defining a holoprosencephaly locus on human chromosome 14q13 and characterization of potential candidate genes. (PMID: 15820313) Kamnasaran D. … Cox D.W. (Genomics 2005) 2 3 64
  2. Proteomic Analysis of the EWS-Fli-1 Interactome Reveals the Role of the Lysosome in EWS-Fli-1 Turnover. (PMID: 24999758) Elzi D.J. … Shiio Y. (J. Proteome Res. 2014) 3 64

Products for IGBP1P1 Gene

Sources for IGBP1P1 Gene

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