IFRD2 Gene
protein-coding GIFtS : 50
GCID: GC03 M050325
interferon-related developmental regulator 2
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Aliasesfor IFRD2 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases Interferon-Related Developmental Regulator 2 1 2 IFNRP1 2 SKMc151 2 SM151 2 Interferon-Related Protein2 Protein SKMC153
Export aliases for IFRD2 gene to outside databases Previous GC identifers: GC03P049650 GC03P049820 GC03M050180 GC03M050285 GC03M050278 GC03M050302 GC03M050303
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Summariesfor IFRD2 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section --
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Genomic Viewsfor IFRD2 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000003.11 NC_018914.1 NT_022517.18 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the IFRD2 gene promoter: ATF-2 c-Jun Other transcription factors Search SABiosciences Chromatin IP Primers for IFRD2 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat IFRD2
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 3p21.3 Ensembl cytogenetic band: 3p21.31 HGNC cytogenetic band: 3p21.3 IFRD2 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 3 GeneLoc Exon Structure
GeneLoc location for GC03M050325: view genomic region
(about GC identifiers )
Start:
50,325,163 bp from pter
End:
50,330,349 bp from pter
Size:
5,187 bases
Orientation:
minus strand
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Proteinsfor IFRD2 gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: IFRD2_HUMAN, Q12894 (See
protein sequence )Recommended Name: Interferon-related developmental regulator 2 Size : 506 amino acids; 54814 Da
Caution : It is uncertain whether Met-1 or Met-65 is the initiator
Sequence caution : Sequence=AAH01327.1; Type=Erroneous initiation; Note=Translation N-terminally extended;Sequence=AAH01676.1; Type=Erroneous initiation; Note=Translation N-terminally extended; Sequence=AAH07265.1; Type=Erroneous initiation; Note=Translation N-terminally extended; Sequence=AAH07437.3; Type=Erroneous initiation; Note=Translation N-terminally extended;
Secondary accessions : Q9BVB4Explore the universe of human proteins at neXtProt for IFRD2: NX_Q12894 Post-translational modifications:
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_Q12894 IFRD2 Protein expression data from MOPED and PaxDb : About this image
REFSEQ proteins: NP_006755.4 ENSEMBL proteins: ENSP00000402849 ENSP00000408549 ENSP00000392316 ENSP00000415448 ENSP00000413726 ENSP00000336936 ENSP00000398971 Human Recombinant Protein Products: Gene Ontology (GO): 1 cellular component term (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0005575 cellular_component
ND --
IFRD2 for ontologies About GeneDecksing IFRD2 Antibody Products: Assay Products for IFRD2:
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Protein
Domains / Familiesfor IFRD2 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
IFRD2 for domains About GeneDecksing 4 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry Q12894 ProtoNet protein and cluster: Q12894
1 Blocks protein family : IPB006921 Interferon-related protein conserved region UniProtKB/Swiss-Prot: IFRD2_HUMAN, Q12894 Similarity : Belongs to the IFRD family
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Functionfor IFRD2 gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Function Summary: Genatlas biochemistry entry for IFRD2 : interferon-related developmental regulator 2,transcript from a region commonly deleted in small cell lung cancer lines,expressed in the initial stages of embryogenesis,in fetal and adult tissues,(predominantly in skeletal and cardiac muscle),rodent immediate early response gene homolog (murine PC4,rat TIS7), IFRD1 family Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for IFRD2 (see all 4 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for IFRD2 (see all 2 )OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: IFRD2 (NM_006764 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for IFRD2 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat IFRD2
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for IFRD2
Gene Ontology (GO): 2 molecular function terms (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0003674 molecular_function
ND -- GO:0005515 protein binding
IPI --
IFRD2 for ontologies About GeneDecksing
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Pathways & Interactionsfor IFRD2 gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Interactions: Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for IFRD2 STRING Interaction
Network Preview (showing 5 interactants - click image to see 19)5/19 Interacting proteins for IFRD2 (Q12894 1 , 3 ENSP00000398971 4 ) via UniProtKB, MINT, STRING , and/or I2D (see all 19 )About this table
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Drugs & Compoundsfor IFRD2 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for IFRD2 Search CenterWatch for drugs/clinical trials and news about IFRD2
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Transcriptsfor IFRD2 gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for IFRD2 gene: NM_006764.4 Unigene Cluster for IFRD2:
Interferon-related developmental regulator 2 Hs.743323 [show with all ESTs ] Unigene Representative Sequence: Y12395 17 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000417626 (uc011bdp.2 ) ENST00000426499 ENST00000436390 (uc003czb.3 )ENST00000474556 ENST00000464258 ENST00000486322 ENST00000438296 ENST00000492387 ENST00000469855 ENST00000414734 ENST00000483071 ENST00000489569 ENST00000484043 ENST00000462001 ENST00000468737 ENST00000336089 ENST00000429673 Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for IFRD2 (see all 4 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for IFRD2 (see all 2 )OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: IFRD2 (NM_006764 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for IFRD2 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat IFRD2
Additional cDNA sequence: AK074763.1 AK097765.1 AK309114.1 BC001327.1 BC001676.2 BC007265.1 BC007437.2 BT019999.1 U09585.1 Y12395.1
20 DOTS entries : DT.454516 DT.100815135
DT.100815140 DT.101959858 DT.92444818 DT.100815138 DT.95205403 DT.120846696 DT.100815133 DT.95195756 DT.120846804 DT.75126630 DT.100708651 DT.120846806 DT.416076 DT.86844180 DT.95195692 DT.95195753 DT.120846738 DT.95194368 24/510 AceView cDNA sequences (see all 510 ):
CR614993 BU951922 BM976273 AI290004 BU952179 BC004483 NM_006764 CB528453 AA857646 AI003352 CF146834 AF040710 BM793195 BG258392 CR594453 BM989194 AF040706 AF502910 CR608020 AA594445 BU160519 BE904712 AA579404 AW410513 GeneLoc Exon Structure
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Expression for IFRD2 gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section IFRD2 expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: GGGTGGGTAG
About this image IFRD2 expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table See IFRD2 Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for IFRD2 SOURCE GeneReport for Unigene cluster: Hs.743323 UniProtKB/Swiss-Prot: IFRD2_HUMAN, Q12894 Tissue specificity : Expressed in a variety of tissues SABiosciences Expression via Pathway-Focused PCR Array including IFRD2 : Interferons & Receptors in human mouse rat
Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for IFRD2Browse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat IFRD2 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat IFRD2 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat IFRD2 In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for IFRD2
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Orthologsfor IFRD2 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of eukaryotes.
Orthologs for IFRD2 gene from 8/23 species (see all 23 ) About this table
ENSEMBL Gene Tree for IFRD2 (if available)TreeFam Gene Tree for IFRD2 (if available)
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Paralogsfor IFRD2 gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for IFRD2 gene IFRD1 2 1 SIMAP similar gene for IFRD2 using alignment to 5 protein entries: IFRD2_HUMAN (see all proteins ):IFRD1
IFRD2 for paralogs About GeneDecksing
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Genomic Variantsfor IFRD2 gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 3 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for IFRD2 (50325163 - 50330349 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV): 4 variations for IFRD2 4 CNVs : 30176 4335 3429 4336
SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing IFRD2
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Disorders
/ Diseasesfor IFRD2 gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
IFRD2 for disorders About GeneDecksing
OMIM gene information: 602725
OMIM disorders : --3 diseases for IFRD2 : About MalaCards alopecia areata alopecia lung cancer 1 disease from the University of Copenhagen DISEASES database for IFRD2 :Alopecia areata Human Genome Epidemiology (HuGE) Navigator: IFRD2 (1 document)Export disorders for IFRD2 gene to outside databases
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Publicationsfor IFRD2 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for IFRD2 gene, integrated from 9 sources (see all 16 ): (articles sorted by number of sources associating them with IFRD2) Utopia : connect your pdf to the dynamic world of online information
The human homolog of the rodent immediate early response genes, PC4 and TIS7, resides in the lung cancer tumor suppressor gene region on chromosome 3p21. (PubMed id 9050919) 1 , 2 , 3 Latif F.... Lerman M.I. (1997) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 1 , 2 Gerhard D.S....Malek J. (2004) Mapping a dynamic innate immunity protein interaction network regulating type I interferon production. (PubMed id 21903422) 1 Li S....Dorf M.E. (2011) Interactions of pathological hallmark proteins: tubul in polymerization promoting protein/p25, beta-amyloid, and alpha-synuclein. (PubMed id 21832049) 1 OlA!h J....OvA!di J. (2011) Mass spectrometric analysis of lysine ubiquitylation r eveals promiscuity at site level. (PubMed id 21139048) 1 Danielsen J.M....Nielsen M.L. (2011) Genome-wide YFP fluorescence complementation screen id entifies new regulators for telomere signaling in human cells. (PubMed id 21044950) 1 Lee O.H....Songyang Z. (2011) Genetic variation and antioxidant response gene expre ssion in the bronchial airway epithelium of smokers at risk for lung cancer. (PubMed id 20689807) 1 Wang X....Bell D.A. (2010) Comparison of substrate specificity of the ubiquitin ligases Nedd4 and Nedd4-2 using proteome arrays. (PubMed id 19953087) 1 Persaud A....Rotin D. (2009) Defining the human deubiquitinating enzyme interactio n landscape. (PubMed id 19615732) 1 Sowa M.E....Harper J.W. (2009) The DNA sequence, annotation and analysis of human chromosome 3. (PubMed id 16641997) 2 Muzny D.M....Gibbs R.A. (2006)
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External Searches for IFRD2 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing IFRD2 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing IFRD2 gene
(According to HUGE )
About This Section --
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Specialized Databases showing IFRD2 gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for IFRD2 Pharmacogenomics, SNPs, Pathways
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About This Section Patent Information for IFRD2 gene: Search GeneIP for patents involving IFRD2 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor IFRD2 gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript and LifeMap BioReagents , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences ), In Situ Hybridization Assays from Advanced Cell Diagnostics About This Section
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QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat IFRD2 QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing IFRD2 QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat IFRD2 QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat IFRD2 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat IFRD2 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat IFRD2
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IFRD2 Proteins, Antibodies, CLIAs, and ELISAs
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for IFRD2
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Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat IFRD2
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