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Aliases for IFNG-AS1 Gene

Subcategory (RNA class) for IFNG-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for IFNG-AS1 Gene

  • IFNG Antisense RNA 1 2 3 5
  • Theilers Murine Encephalomyelitis Virus Persistence Candidate Gene 1 2 3
  • IFNG Antisense RNA 1 (Non-Protein Coding) 2 3
  • LincR-Ifng-3AS 3
  • GS1-410F4.2 3
  • Tmevpg1 3
  • NEST 3

External Ids for IFNG-AS1 Gene

Previous GeneCards Identifiers for IFNG-AS1 Gene

  • GC12P068384

Summaries for IFNG-AS1 Gene

GeneCards Summary for IFNG-AS1 Gene

IFNG-AS1 (IFNG Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for IFNG-AS1 Gene

Genomics for IFNG-AS1 Gene

Regulatory Elements for IFNG-AS1 Gene

Enhancers for IFNG-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12G067988 1.7 FANTOM5 Ensembl ENCODE dbSUPER 17.4 +1.4 1384 4.8 PKNOX1 ZSCAN4 CBX5 RELB IKZF2 CEBPB TBX21 SP1 SMARCA4 IKZF1 IFNG-AS1 LINC01479 IFNG IL22 DYRK2 RPL39P28
GH12G067939 1.3 Ensembl ENCODE dbSUPER 15 -47.8 -47821 4.6 PKNOX1 ZNF2 ZBTB40 RAD21 RFX5 ZNF335 SCRT2 ZSCAN5C MIXL1 ZNF654 IFNG-AS1 ENSG00000235872 LINC01479 GC12P067957
GH12G067980 0.9 ENCODE 17.2 -8.0 -7964 2.1 PKNOX1 SIN3A BMI1 ZBTB40 RAD21 ZNF143 ZNF207 ETV6 FOS RELB IFNG-AS1 GC12M067956 GC12P067986
GH12G068041 1.1 Ensembl ENCODE 13.5 +53.0 52981 1.6 BCOR CTCF CBX3 USF1 ZMYM3 MAX RAD21 ZFHX2 ARID3A RBAK IFNG-AS1 HNRNPA1P70 GC12P068096
GH12G068031 0.6 ENCODE 18.9 +42.7 42676 0.9 ZNF316 EGR1 ZSCAN5C MAFG EMSY EP300 MAFK IFNG-AS1 HNRNPA1P70 GC12M068016
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around IFNG-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for IFNG-AS1 Gene

Chromosome:
12
Start:
67,989,445 bp from pter
End:
68,234,686 bp from pter
Size:
245,242 bases
Orientation:
Plus strand

Genomic View for IFNG-AS1 Gene

Genes around IFNG-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
IFNG-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for IFNG-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for IFNG-AS1 Gene

Proteins for IFNG-AS1 Gene

Post-translational modifications for IFNG-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for IFNG-AS1 Gene

Domains & Families for IFNG-AS1 Gene

Gene Families for IFNG-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with IFNG-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for IFNG-AS1 Gene

Function for IFNG-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for IFNG-AS1 Gene

Localization for IFNG-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for IFNG-AS1 Gene

Pathways & Interactions for IFNG-AS1 Gene

SuperPathways for IFNG-AS1 Gene

No Data Available

Interacting Proteins for IFNG-AS1 Gene

Gene Ontology (GO) - Biological Process for IFNG-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for IFNG-AS1 Gene

Drugs & Compounds for IFNG-AS1 Gene

No Compound Related Data Available

Transcripts for IFNG-AS1 Gene

mRNA/cDNA for IFNG-AS1 Gene

(1) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for IFNG-AS1 Gene

IFNG antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for IFNG-AS1 Gene

No ASD Table

Relevant External Links for IFNG-AS1 Gene

GeneLoc Exon Structure for
IFNG-AS1
ECgene alternative splicing isoforms for
IFNG-AS1

Expression for IFNG-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for IFNG-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for IFNG-AS1 Gene

This gene is overexpressed in Spleen (x8.9).

SOURCE GeneReport for Unigene cluster for IFNG-AS1 Gene:

Hs.439832
genes like me logo Genes that share expression patterns with IFNG-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for IFNG-AS1 Gene

Orthologs for IFNG-AS1 Gene

Evolution for IFNG-AS1 Gene

ENSEMBL:
Gene Tree for IFNG-AS1 (if available)
TreeFam:
Gene Tree for IFNG-AS1 (if available)

No data available for Orthologs for IFNG-AS1 Gene

Paralogs for IFNG-AS1 Gene

No data available for Paralogs for IFNG-AS1 Gene

Variants for IFNG-AS1 Gene

Sequence variations from dbSNP and Humsavar for IFNG-AS1 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs1000063486 -- 68,005,447(+) TCTTT(A/G)GAAAT intron-variant
rs1000067275 -- 68,020,497(+) TTGTC(A/G/T)CTGGA intron-variant, nc-transcript-variant
rs1000086668 -- 68,014,289(+) GTCCT(C/G)TGGGT intron-variant
rs1000292013 -- 68,007,980(+) AAAAA(A/G)TCAGG intron-variant
rs1000420014 -- 68,020,217(+) AGCAT(C/G)ACACA intron-variant, nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for IFNG-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1039638 CNV gain 25217958
nsv975510 CNV duplication 23825009

Relevant External Links for IFNG-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
IFNG-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for IFNG-AS1 Gene

Disorders for IFNG-AS1 Gene

Relevant External Links for IFNG-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
IFNG-AS1

No disorders were found for IFNG-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for IFNG-AS1 Gene

Publications for IFNG-AS1 Gene

  1. Expression and regulation of intergenic long noncoding RNAs during T cell development and differentiation. (PMID: 24056746) Hu G. … Zhao K. (Nat. Immunol. 2013) 2 3 64
  2. Homology between a 173-kb region from mouse chromosome 10, telomeric to the Ifng locus, and human chromosome 12q15. (PMID: 11735227) Vigneau S. … Bureau J.F. (Genomics 2001) 2 3 64
  3. The Long Noncoding RNA IFNG-AS1 Promotes T Helper Type 1 Cells Response in Patients with Hashimoto's Thyroiditis. (PMID: 26634912) Peng H. … Wang S. (Sci Rep 2015) 3 64
  4. Cutting edge: influence of Tmevpg1, a long intergenic noncoding RNA, on the expression of Ifng by Th1 cells. (PMID: 22851706) Collier S.P. … Aune T.M. (J. Immunol. 2012) 3 64
  5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for IFNG-AS1 Gene

Sources for IFNG-AS1 Gene

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