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IFNG Gene

protein-coding   GIFtS: 67

GC12M068548
interferon, gamma
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
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Aliases & Descriptions
interferon, gamma1 2
Immune interferon2 3
IFN-gamma2 3
IFG2 5
IFI2 5

External Ids:    HGNC: 54381   Entrez Gene: 34582   Ensembl: ENSG000001115377   UniProtKB: P015793   

Search outside databases for aliases for IFNG gene

Previous GC identifers: GC12M068064 GC12M068352 GC12M068265 GC12M066834

(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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Entrez Gene summary for IFNG:
This gene encodes a member of the type II interferon family. The protein encoded is a soluble cytokine with antiviral,
immunoregulatory and anti-tumor properties and is a potent activator of macrophages. Mutations in this gene are
associated with aplastic anemia.

UniProtKB/Swiss-Prot: IFNG_HUMAN, P01579
Function: Produced by lymphocytes activated by specific antigens or mitogens. IFN-gamma, in addition to having
antiviral activity, has important immunoregulatory functions. It is a potent activator of macrophages, it has
antiproliferative effects on transformed cells and it can potentiate the antiviral and antitumor effects of the type I
interferons

Gene Wiki entry for IFNG (Interferon-gamma)
(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC and Ensembl (release 56), Regulatory elements and Epigenetics data according to SABiosciences)
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Regulatory elements:
"" SABiosciences Regulatory transcription factor binding sites in the IFNG gene upstream (promoter) region "":
CREB   deltaCREB   GATA-3   STAT3   GATA-2   GATA-1   p300   STAT5B   IRF-1   Chx10   

Epigenetics:
"" Search SABiosciences Methyl-Profiler DNA Methylation qPCR Primer Assays for IFNG ""

Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 12q14   Ensembl cytogenetic band:  12q15   HGNC cytogenetic band: 12q14

IFNG Gene in genomic location: bands according to Ensembl, locations according to "" (and/or Entrez Gene and/or Ensembl if different)
""

GeneLoc gene densities for chromosome 12         GeneLoc Exon Structure

GeneLoc location for GC12M068548:  view genomic region     (about GC identifiers)

Start:
68,548,549 bp from pter
End:
68,553,523 bp from pter
Size:
4,975 bases
Orientation:
minus strand
RefSeq DNA sequence:
NC_000012.11  NT_029419.12  
(According to 1UniProtKB, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene, Novus Biologicals, and/or Sino Biological,
Biochemical Assays by Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 May 2010 and Entrez Gene, Antibodies by Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abnova, OriGene, Novus Biologicals, and/or Epitomics)
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UniProtKB/Swiss-Prot: IFNG_HUMAN, P01579 (See protein sequence)
Recommended Name: Interferon gamma precursor  
Size: 166 amino acids; 19348 Da
Subunit: Homodimer
Subcellular location: Secreted
PDB structures from "" and Proteopedia "" :
1EKU (3D) ""    1FG9 (3D) ""    1FYH (3D) ""    1HIG (3D) ""    3BES (3D) ""    
Secondary accessions: B5BU88 Q53ZV4

Post-translational modifications:

  • Proteolytic processing produces C-terminal heterogeneity, with proteins ending alternatively at Gly-150, Met-157 or
  • Gly-1611
  • View phosphorylation sites using PhosphoSite2


  • REFSEQ proteins: NP_000610.2  

    ENSEMBL proteins: 
    ENSP00000229135 


    Human Recombinant Proteins 
    ""Millipore Purified and/or Recombinant IFNG Protein
    ""Browse Human Recombinant Proteins at Sigma-Aldrich
    ""R&D Systems Recombinant & Natural Proteins for IFNG (IFN-gamma)
    ""Browse recombinant and purified proteins available from Enzo Life Sciences
    ""HuPro® and/or Recombinant Proteins from Abnova for IFNG ""
    ""Browse Origene full length recombinant human proteins expressed in human HEK293 cells
    ""Novus Biologicals Proteins for IFNG  ""
    Novus Biologicals Lysates for IFNG
    ""Browse Sino Biological Recombinant Proteins  ""

    2 Gene Ontology (GO) cellular component terms (GO ID links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005576 extracellular region IEA--
    GO:0005615 extracellular space IEA--
    About this table

    "" IFNG for ontologies           About GeneDecksing



    Antibodies for IFNG: 
    ""Millipore Mono- and Polyclonal Antibodies for the study of IFNG
    ""Sigma-Aldrich Antibodies for IFNG
    ""R&D Systems Antibodies for IFNG (IFN-gamma)
    ""Cell Signaling Technology (CST) Antibodies for IFNG  (IFN-gamma)
    ""Monoclonal and Polyclonal Antibodies from Abnova (IFNG)
    "" Origene Antibodies: IFNG ""
    ""Novus Biologicals Antibodies for IFNG
    ""Epitomics antibodies for IFNG

    Assays for IFNG: 
    ""Millipore Kits and Assays for the Analysis of IFNG
    ""Browse ELISAs at Sigma-Aldrich
    ""R&D Systems ELISAs for IFNG (IFN-gamma)         (see all)
    ""Browse Enzo Life Sciences for kits & assays

    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

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    "" IFNG for domains           About GeneDecksing

    2 InterPro domains/families:
     IPR009079 4_helix_cytokine-like_core
     IPR002069 Interferon_gamma

    Graphical View of Domain Structure for InterPro Entry P01579

    ProtoNet protein and cluster: P01579

    1 Blocks protein family: IPB002069 Interferon gamma

    UniProtKB/Swiss-Prot: IFNG_HUMAN, P01579
    Similarity: Belongs to the type II (or gamma) interferon family

    (According to MGI May 08 2010, UniProtKB, IUBMB,and/or Genatlas,
    shRNA from OriGene, Sigma-Aldrich, RNAi from Millipore, Abnova, siRNAs from Applied Biosystems, Sigma-Aldrich, Clones from Millipore, Sigma-Aldrich, OriGene, Sino Biological, Ontologies according to Gene Ontology Consortium 01 May 2010 via Entrez Gene.)
    About This Section

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    Inhib.
    RNA:
    ""Browse for Gene Knock-down Tools from Millipore
    ""Browse Abnova for Chimera RNAi Products
    "" Origene 29mer shRNA kits in GFP-retroviral vector: IFNG
    Origene shRNA RFP: IFNG
    Origene basic RS shRNA: IFNG

    ""Applied Biosystems Silencer® siRNAs for IFNG
    ""Sigma-Aldrich siRNA Panels and siRNA for IFNG
    Sigma-Aldrich shRNA Panels and shRNA for IFNG
    Explore Sigma-Aldrich super-pooled esiRNAs
    Clones:""Browse Clones for the Expression of Recombinant Proteins Available from Millipore
    ""Browse iPSC Reprogramming Factors at Sigma-Aldrich
    "" Origene GFP tagged cDNA clones in CMV expression vector: IFNG
    Origene Myc/DDK tagged cDNA clones in CMV expression vector: IFNG
    Origene untagged cDNA clones in CMV expression vector: IFNG
    ""Browse Sino Biological Human cDNA Clones  ""

    UniProtKB/Swiss-Prot: IFNG_HUMAN, P01579
    Function: Produced by lymphocytes activated by specific antigens or mitogens. IFN-gamma, in addition to having
    antiviral activity, has important immunoregulatory functions. It is a potent activator of macrophages, it has
    antiproliferative effects on transformed cells and it can potentiate the antiviral and antitumor effects of the type I
    interferons

    Genatlas biochemistry entry for IFNG:
    interferon type II,gamma,19.3kDa,expressed by lymphocytes,involved in immunoregulation

    2 Gene Ontology (GO) molecular function terms (GO ID links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005125 cytokine activity IEA--
    GO:0005133 interferon-gamma receptor binding IEA--
    About this table

    "" IFNG for ontologies           About GeneDecksing

    Animal Models: 15/18 MGI mutant phenotypes (inferred from 5 alleles""(MGI details for Ifng) (see all 18 ):

    cardiovascular systemcellulardigestive/alimentaryendocrine/exocrine glandgrowth/size
    hematopoietic systemhomeostasis/metabolismimmune systemlethality-postnatallife span-post-weaning/aging
    liver/biliary systemno phenotypic analysisnormalrenal/urinary systemreproductive system

    "" IFNG for phenotypes           About GeneDecksing

    (Pathways according to Millipore, Cell Signaling Technology, Sigma-Aldrich, Applied Biosystems GeneAssist, KEGG and/or UniProtKB, (map by GeneGo),
    Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 May 2010 via Entrez Gene).
    About This Section

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    "" IFNG for pathways           About GeneDecksing

    5/8 "" Millipore Pathways for IFNG (see all 8 )
      ""  Immune response IFN gamma signaling pathway
    Transcription Role of VDR in regulation of genes involved in osteoporosis
    Immune response Role of integrins in NK cells cytotoxicity
    Immune response CD16 signaling in NK cells
    Immune response IL-12-induced IFN-gamma production

    5/22 "" Sigma-Aldrich "Your Favorite Gene" Pathways for  IFNG  (Your Favorite Gene powered by Ingenuity) (see all 22 )
      ""  Production of Nitric Oxide and Reactive Oxygen Species in Macrophages
    Crosstalk between Dendritic Cells and Natural Killer Cells
    Colorectal Cancer Metastasis Signaling
    HMGB1 Signaling
    Neuroprotective Role of THOP1 in Alzheimer's Disease

    5/18 "" GeneAssist Pathways for IFNG (see all 18 )
      ""  Murine MSP-STK Signaling
    HMGB1 Pathway
    Interferon Pathway
    Colorectal Cancer Metastasis
    Virus-Induced Airway Inflammation

    5/12 "" Kegg Pathways  (Kegg details for IFNG) (see all 12 ):
      ""  hsa03050 Proteasome
    hsa04060 Cytokine-cytokine receptor interaction
    hsa04140 Regulation of autophagy
    hsa04350 TGF-beta signaling pathway
    hsa04630 Jak-STAT signaling pathway

    "" SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for IFNG

    5/87 Interacting proteins for IFNG (ENSP000002291353) via UniProtKB, MINT, and/or STRING (see all 87 ""
    InteractantInteraction Details
    GeneCardExternal ID(s)
    IFNGR1ENSP000003567133STRING: ENSP00000356713
    CALM3ENSP000002912953STRING: ENSP00000291295
    CAMK2GENSP000003190603STRING: ENSP00000319060
    CBLENSP000002640333STRING: ENSP00000264033
    CCR5ENSP000002923033STRING: ENSP00000292303
    About this table

    5/43 Gene Ontology (GO) biological process terms (GO ID links to tree view) (see all 43 ):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0000060 protein import into nucleus, translocation IDA15604419
    GO:0001781 neutrophil apoptosis IEA--
    GO:0002026 regulation of the force of heart contraction ----
    GO:0006925 inflammatory cell apoptosis IEA--
    GO:0006928 cellular component movement TAS10477596
    About this table

    "" IFNG for ontologies           About GeneDecksing


    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
    About This Section

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    "" IFNG for compounds           About GeneDecksing

    "" Browse drugs & compounds from Enzo Life Sciences
    ""Sigma-Aldrich Small Molecules for IFNG:
    Small Molecule - Antagonist

    "" Browse Tocris compounds for IFNG
    UniProtKB/Swiss-Prot: IFNG_HUMAN, P01579
    Pharmaceutical: Available under the name Actimmune (Genentech). Used for reducing the frequency and severity of serious
    infections associated with chronic granulomatous disease (CGD)

    10/2201 ""Novoseek chemical compound relationships for IFNG gene (see all 2201 )
    Compound   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
    indoleamine 100.00 229 2427623 (5), 10729320 (5), 3124115 (3), 2506547 (3) (see all 100)
    alpha-galcer 100.00 266 12444115 (6), 12176894 (6), 11385616 (6), 17359285 (5) (see all 100)
    neopterin 100.00 374 2119922 (6), 9717668 (5), 17657857 (5), 1341444 (5) (see all 100)
    nitric oxide 100.00 3718 11035727 (10), 7496727 (9), 14511384 (9), 8993009 (8) (see all 100)
    phytohemagglutinin 100.00 667 2945859 (9), 15790519 (6), 7509103 (5), 3935348 (5) (see all 100)
    il-12 100.00 105 12972580 (5), 11479428 (5), 18708162 (4), 19740775 (3) (see all 77)
    rantes 100.00 459 9327364 (5), 11172624 (5), 9566795 (4), 16528011 (4) (see all 100)
    antiviral 100.00 975 8613467 (7), 16359238 (7), 3922841 (6), 3142215 (6) (see all 100)
    ionomycin 70.13 250 7737290 (4), 9876227 (3), 8406581 (3), 16600192 (3) (see all 100)
    ifn-alpha 69.07 106 10029571 (5), 19121222 (4), 10666256 (4), 20084112 (3) (see all 75)
    About this table


    (GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 223 Homo sapiens; Apr 2 2010) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView,
    non coding RNAs according to RNAdb,
    ESTs according to GeneTide,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from Millipore and/or Abnova,
    siRNAs from Applied Biosystems, Sigma-Aldrich,
    shRNA from Sigma-Aldrich, OriGene, microRNA from SABiosciences,
    Tagged/untagged cDNA clones from OriGene, Primers from OriGene and/or SABiosciences,
    Expression Assays from Applied Biosystems)
    About This Section

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    Inhib.
    RNA:
    ""Browse for Gene Knock-down Tools from Millipore
    ""Browse Abnova for Chimera RNAi Products
    ""Applied Biosystems Silencer® siRNAs:  NM_000619  
    "" Origene 29mer shRNA kits in GFP-retroviral vector: IFNG
    Origene shRNA RFP: IFNG
    Origene basic RS shRNA: IFNG

    ""Sigma-Aldrich siRNA Panels and siRNA for IFNG
    Sigma-Aldrich shRNA Panels and shRNA for IFNG
    Explore Sigma-Aldrich super-pooled esiRNAs

    microRNA:""3 SABiosciences microRNAs that regulate IFNG""
    hsa-miR-29c hsa-miR-29a hsa-miR-29b
    Assays:  ""Applied Biosystems TaqMan® Gene Expression Assays:  
    NM_000619  


    Clones:"" Origene GFP tagged cDNA clones in CMV expression vector: IFNG
    Origene Myc/DDK tagged cDNA clones in CMV expression vector: IFNG
    Origene untagged cDNA clones in CMV expression vector: IFNG
    Primers:"" Origene genome-wide validated SYBR primer pairs: IFNG
    ""SABiosciences RT2 qPCR Primer Assay for IFNG: PPH00380A ""

    REFSEQ mRNAs for IFNG gene: 

    NM_000619.2  

    Additional cDNA sequence: 

    AB451324.1 AB451453.1 AF506749.1 AM903379.1 AY044154.1 AY255837.1 AY255839.1 BC070256.1 
    EF173872.1 V00543.1 X01992.1 X13274.1 X62468.1 X62469.1 X62470.1 X62471.1 
    X62472.1 X62473.1 X62474.1 X87308.1 

    3 DOTS entries:

    DT.413894  DT.413893  DT.91824036 

    24/40 AceView cDNA sequences (see all 40 ):

    AA381839 AA381654 AA969504 T29780 X13274 V00543 BG230744 NM_000619 
    CD520458 AY255837 CD638881 AY255839 AA381921 CD640310 AA381733 AF506749 
    CD520994 AA381667 AY044154 X87308 AA381626 X01992 BC070256 CD639121 

    "" highest scoring ESTs for IFNG:

    X13274 AA381613 AA381626 AA381629 AA381654 AA381667 AA381733 AA381839 AA381921 AF506749 

    Unigene Cluster for IFNG:

    Interferon, gamma
    Hs.856  [show with all ESTs]
    Unigene Representative Sequence: BC070256


    GeneLoc Exon Structure

    1 Ensembl transcript including schematic representation:
    ENST00000229135  
    (Experimental results according to 1GeneNote and GNF BioGPS,
    probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 223 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
    Expression Assays from Applied Biosystems, Primers from OriGene and/or SABiosciences )
    About This Section

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    IFNG expression in normal and diseased human tissues

    "" Applied Biosystems TaqMan ® Gene Expression Assays for IFNG

    1""  / 2""  / 3""

    5 probe-sets matching IFNG gene

    Affymetrix
    probe-set
    Array  GeneAnnot data GeneNote data GeneTide data
    # genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank
    40702_at2, 3 U95-A 1 1.00 1.00 0.97 0.90 X13274 1.00 1.00 1.00 1
    1611_s_at2, 3 U95-A 1 1.00 1.00 0.92 0.96 J00219 0.20 1.00 0.72 1
    1021_at2, 3 U95-A 1 0.94 1.00 0.97 1.23 J00219 0.20 1.00 0.72 1
    210354_at2, 3 U133-A 1 0.91 1.00 -- -- M29383 0.20 1.00 0.72 1
    210354_at2 U133Plus2 1 0.91 1.00 -- -- -- -- -- -- --
    About this table

    "" IFNG for expression           About GeneDecksing

    Data from Genenote  (Publications) and GNF BioGPS
        About these images
    About these images

    CGAP SAGE TAG: CCTGGTGCTT

    SOURCE GeneReport for Unigene cluster: Hs.856

    Expression variation in blood from EXPOLDB for IFNG

    UniProtKB/Swiss-Prot: IFNG_HUMAN, P01579
    Tissue specificity: Released primarily from activated T lymphocytes

    Primers:"" Origene genome-wide validated SYBR primer pairs: IFNG ""
    ""SABiosciences RT2 qPCR Primer Assay for IFNG: PPH00380A ""
    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI May 08 2010, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
    About This Section

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    Orthologs for IFNG gene from 5 species
    Organism Gene Locus Description Human
    Similarity
    NCBI accessions
    dog
    (Canis familiaris)
    IFNG1   -- interferon gamma 77.71(n)
    65.66(a)
    403801  NM_001003174.1  NP_001003174.1 
    chimpanzee
    (Pan troglodytes)
    IFNG1   -- interferon, gamma 99.2(n)
    99.4(a)
    449517  XM_001151968.1  XP_001151968.1 
    cow
    (Bos taurus)
    IFNG1   -- interferon, gamma 75.35(n)
    61.82(a)
    281237  NM_174086.1  NP_776511.1 
    rat
    (Rattus norvegicus)
    Ifng1   -- interferon gamma 60.65(n)
    39.35(a)
    25712  NM_138880.2  NP_620235.1 
    mouse
    (Mus musculus)
    Ifng5
    Ifng1
    10 (67.00 cM)5
    interferon gamma1, 5 62.99(n)1
    41.56(a)1
    159781  NM_008337.21  NP_032363.11 
     AK0895745  AY4238475  (see all 13)
    About this table        Species with no ortholog for IFNG

    ENSEMBL Gene Tree for IFNG
    (Paralogs according to 1HomoloGene
    and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
    About This Section

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      --
    (SNPs according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Genotyping Reagents from Applied Biosystems)
    About This Section

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    10/105 NCBI SNPs in IFNG are shown (see all 105 )
    (Click "" for Applied Biosystems TaqMan ® Genotyping Assay)  (see all 57)
    ABGenomic DataTranscription Related DataAllele Frequencies
    SNP IDValidChr 12 posSequenceRecsAA
    Chg
    TypeMoreRecsAllele
    freq
    PopTotal
    sample
    More
    ------------
    ""
    rs20697311,2
    C,F,H65605592(-) TGCCCC/TATAAC 1 -- ng51""11Minor allele frequency- T:0.00NS MN EA 898""
    --
    rs20697071,2
    C,F,H65604924(-) ATTCTC/GTACAC 1 -- ng51""12Minor allele frequency- G:0.03NS EA 1996""
    ""
    rs20697251,2
    C,F,H65599024(-) CTTTCG/ACTTTT 1 -- ng31""12Minor allele frequency- A:0.01NS EA 1158""
    --
    rs79567201,2
    C,A,H65606011(+) ttgtgC/Gtattt 1 -- ng51 tfbs3""0--------
    --
    rs20697061,2
    C,F,H65604952(-) CACTGC/TGTCTG 1 -- ng51 tfbs3""3Minor allele frequency- T:0.01NS 206""
    --
    rs20697341,2
    C,F,H68549010(-) CAACTT/ATTGTG 1 -- ut31""11Minor allele frequency- A:0.13NS MN EA 890""
    ""
    rs20697051,2
    C,F,A65605646(-) AGAAGT/CTAACT 1 -- ng51""18Minor allele frequency- C:0.50NS MN EA NA WA 2134""
    ""
    rs20697271,2
    C,F,A65598861(-) CCTTCA/GTTTCA 1 -- ng31""18Minor allele frequency- G:0.24NS NA EA WA 1404""
    ""
    rs20697241,2
    C,F65599153(-) TGAGAC/TCTGGA 1 -- ng31""11Minor allele frequency- T:0.01NS EA NA 934""
    ""
    rs20697231,2
    C,F68548594(-) GTTAAA/GATTAT 1 -- ut31""13Minor allele frequency- G:0.02NS EA MN NA WA 944""
    About this table

    HapMap Linkage Disequilibrium images for IFNG (up to first 250kb)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)  ""
          Database of Genomic Variants (DGV) variations for IFNG: --

    (in which this Gene is Involved, According to OMIM, UniProtKB, Novoseek, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, LSDB, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
    About This Section

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    "" IFNG for disorders           About GeneDecksing

    OMIM: 147570   disorders: 613254  609135  607948  609423  609532  

    UniProtKB/Swiss-Prot: IFNG_HUMAN, P01579

  • In Caucasians, genetic variation in IFNG is associated with the risk of aplastic anemia (AA) [MIM:609135]. AA
  • is a rare disease in which the reduction of the circulating blood cells results from damage to the stem cell pool in
    bone marrow. In most patients, the stem cell lesion is caused by an autoimmune attack. T-lymphocytes, activated by an
    endogenous or exogenous, and most often unknown antigenic stimulus, secrete cytokines, including IFN-gamma, which
    would in turn be able to suppress hematopoiesis

    10/2401 ""Novoseek disease relationships for IFNG gene (see all 2401 )

    Disease   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
    tumor necrosis 100.00 8431 18973545 (7), 9231818 (6), 8764480 (6), 8898418 (5) (see all 100)
    class ii; histocompatibility complex 79.12 172 12787470 (5), 8340062 (4), 7936214 (4), 17493524 (4) (see all 100)
    latent tuberculosis 57.33 114 16601088 (6), 19812859 (4), 19769839 (3), 15941805 (3) (see all 88)
    delayed-type hypersensitivity 47.49 403 7875744 (6), 8995722 (4), 3129506 (4), 2530282 (4) (see all 100)
    class i; histocompatibility complex 38.81 115 19825945 (4), 8590733 (3), 7936214 (3), 7906905 (3) (see all 93)
    atopic 38.58 344 8467557 (7), 8473684 (6), 7560664 (5), 16846456 (5) (see all 100)
    atopic dermatitis 36.67 483 7669618 (8), 10193405 (8), 9930598 (7), 7751657 (7) (see all 100)
    bcg infection 33.54 53 8376946 (4), 7590911 (4), 10487389 (4), 18941223 (3) (see all 32)
    pleurisy; tuberculous 30.27 77 17426220 (5), 12921155 (4), 11083686 (4), 8980981 (3) (see all 50)
    mycobacterial infection 27.46 135 7908719 (3), 16127458 (3), 9616207 (2), 9603732 (2) (see all 100)
    About this table

    1 PharmGKB disease relationship for IFNG gene
    Disease PharmGKB Relations PubMed IDs for articles supporting these relationships
    InflammationCO  GN  11404167
    About this table

    Human Gene Mutation Database: IFNG
    Genetic Association Database: IFNG
    Human Genome Epidemiology Navigator: IFNG (456 documents)

    (Possibly Related Articles in Doctor's Guide)
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    (in PubMed. Associations of this gene to articles via 1Novoseek, 2HGNC, 3Entrez Gene, 4UniProtKB/Swiss-Prot, 5UniProtKB/TrEMBL, 6GAD, and/or 7PharmGKB)
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    100/13774 PubMed articles for IFNG gene (see all 13774 ):
    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Disorders
    Search String
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      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)
    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 3458 HGNC: 5438 AceView: IFNG Ensembl:ENSG00000111537 euGenes: HUgn3458
    ECgene: IFNG Kegg: 3458 H-InvDB: IFNG
    (According to HUGE)
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      --
    (According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
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    NameDescription
    ATLAS Chromosomes in Cancer entry for IFNG Genetics and Cytogenetics in Oncology and Haematology
    GeneReviewshttp://www.ncbi.nlm.nih.gov/sites/GeneTests/lab/gene/IFNG
    Wikipedia http://en.wikipedia.org/wiki/Interferon_gamma
    SeattleSNPshttp://pga.gs.washington.edu/data/ifng/
    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from XenneX, Inc.)
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    Patent Information for IFNG gene: ""
    Search GeneIP for patents involving IFNG

    Licensable Technologies for IFNG gene:
     ""Weizmann Institute:Anti-inflammatory properties of low levels of IFN-g    (see all 2)
    GeneCards and IP: ""
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search


    (Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Novus Biologicals,
    Epitomics, Sigma-Aldrich, R&D Systems, SABiosciences, Millipore, Abnova,
    Clones available from OriGene, Sigma-Aldrich, Sino Biological, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience)
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    ""
    ""
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