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Aliases & Descriptions for IFNAR2
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase , and/or 9 Nature :405,311-319 and CroW21)About This Section
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Aliases IFN-R 2 , 3 IFN-alpha-REC 2 , 3 IFNABR 2 , 3 IFNARB 2 , 3 OTTHUMP00000067674 2 OTTHUMP00000067676 2
Descriptions Interferon alpha/beta receptor 2 2 , 3 Type I interferon receptor 2 , 3 human interferon alpha,beta receptor 9 human interferon alpha/beta receptor 2 interferon (alpha, beta and omega) receptor 2 2 interferon-alpha/beta receptor beta chain 2
Search outside databases for aliases for IFNAR2 genePrevious GC identifers: GC21P031179 GC21P033522
Summaries for IFNAR2 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for IFNAR2 : The protein encoded by this gene is a type I membrane protein that forms one of the two chains of areceptor for interferons alpha and beta. Binding and activation of the receptor stimulates Janusprotein kinases, which in turn phosphorylate several proteins, including STAT1 and STAT2. Multipletranscript variants encoding at least two different isoforms have been found for this gene.[provided by RefSeq] UniProtKB/Swiss-Prot: INAR2_HUMAN, P48551 Function : Receptor for interferons alpha and beta. Isoform 1 and isoform 3 are directly involved insignal transduction due to their interaction with the TYR kinase, JAK1. Isoform 1 also interactswith the transcriptional factors, STAT1 and STAT2. Both forms are potent inhibitors of type I IFNactivity
Gene Wiki entry for IFNAR2
Genomic Location for IFNAR2
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences , Whole Chromsome Sequence According to
Nature (Cited Here with Permission) :405,311-319 and CroW21)About This Section
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GC21P033524:
GeneLoc
Nature :405,311-319
Start:
33,524,101 bp from pter
20,179,027 bp from centromere
End:
33,558,700 bp from pter
20,211,701 bp from centromere
Size:
34,600 bases
32,675 bases
Orientation:
plus strand
plus strand
RefSeq DNA sequence: NC_000021.7 NT_011512.10 Proteins for IFNAR2
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: INAR2_HUMAN, P48551 (See
protein sequence )Recommended Name: Interferon-alpha/beta receptor beta chain precursor Size : 515 amino acids; 57759 Da
Subcellular location : Membrane; Single-pass type I membrane protein
PDB structure from and Proteopedia : 1N6U (3D)
 1N6V (3D)
 Alternative splicing : 3 isoforms : P48551-1 P48551-2 P48551-3
Post-translational modifications:
Upon binding, it is phosphorylated on tyrosine residues1
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (3 alternative transcripts):
NP_000865.2 NP_997467.1 NP_997468.1 ENSEMBL proteins: ENSP00000371673 ENSP00000316407 ENSP00000384309 ENSP00000371699 ENSP00000343289 ENSP00000343957 ENSP00000371676 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 4 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for IFNAR2: Assays for IFNAR2:
Protein
Domains/ Families for IFNAR2(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P48551 ProtoNet protein and cluster: P48551
UniProtKB/Swiss-Prot: INAR2_HUMAN, P48551 Similarity : Belongs to the type II cytokine receptor family
Gene Function for IFNAR2
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
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Clones , and
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SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): NM_000874 Applied Biosystems Silencer ® siRNAs for IFNAR2 Sigma-Aldrich siRNA and siRNA Panels for IFNAR2 Sigma-Aldrich shRNA Panels and shRNA for IFNAR2 Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 3 ): NM_000874                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 3 ): NM_000874                                  untagged cDNA clones in CMV expression vector (see all 3 ): NM_000874  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_207585 UniProtKB/Swiss-Prot: INAR2_HUMAN, P48551 Function : Receptor for interferons alpha and beta. Isoform 1 and isoform 3 are directly involved insignal transduction due to their interaction with the TYR kinase, JAK1. Isoform 1 also interactswith the transcriptional factors, STAT1 and STAT2. Both forms are potent inhibitors of type I IFNactivity
Genatlas biochemistry entry for IFNAR2 :interferon alpha/beta (type I) receptor,beta subunit,identified by monoclonal antibody IFNAR beta1,cytokin receptor family II,member
4 MGI mutant phenotypes (inferred from 2 alleles ) (MGI details for Ifnar2) :3 Gene Ontology (GO) molecular function terms (links to tree view) :
About this table
Pathways & Interactions for IFNAR2
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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2 Sigma-Aldrich "Your Favorite Gene" Pathways for IFNAR2 (Your Favorite Gene powered by Ingenuity) Gene Network CentralTM Interacting Genes and Proteins Network for IFNAR2 5/55 Interacting proteins for IFNAR2 (ENSP00000371676 3 P48551 1 , 2 ) via UniProtKB, MINT, and/or STRING (see all 55
)About this table 5 Gene Ontology (GO) biological process terms (links to tree view) :
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Drugs & Compounds for IFNAR2 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for IFNAR2 4 Novoseek chemical compound relationships for IFNAR2 gene
About this table
Transcripts for IFNAR2(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
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siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
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OriGene ,
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): NM_000874 Sigma-Aldrich siRNA and siRNA Panels for IFNAR2 Sigma-Aldrich shRNA Panels and shRNA for IFNAR2 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_000874 NM_207584 NM_207585
REFSEQ mRNAs for IFNAR2 gene (3 alternative transcripts): NM_000874.3 NM_207584.1 NM_207585.1
Applied Biosystems TaqMan ® Gene Expression Assays: NM_000874 NM_207584 NM_207585
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 3 ): NM_000874                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 3 ): NM_000874                                  untagged cDNA clones in CMV expression vector (see all 3 ): NM_000874  
Additional cDNA sequence: AK293059.1 BC002793.2 BC013156.1 CR541817.1 CR593774.1 CR596140.1 CR603546.1 CR611634.1 L41942.1 L41943.1 L41944.1 U29584.1 X77722.1 X89772.1 X89814.1
10 DOTS entries : DT.92467568 DT.92467560 DT.86852545 DT.95107171 DT.100025296 DT.100782879 DT.100782885 DT.95148855 DT.121132950 DT.97790884
24/186 AceView cDNA sequences (see all 186
):AA316831 CR596140 AA356119 CA309324 BQ709397 AA351430 AI675225 AI005041 BQ022518 BE254594 CR599727 AA962667 NM_207585 CA305937 NM_000874 AA029587 NM_207584 AA234570 CR611634 CR541817 BX093020 CR593774 BI253289 AA760805
highest scoring ESTs for IFNAR2 :AA029587 AA249560 AA316831 AA351430 AA351431 AA865870 AA936250 AA973866 AI005041 AI350535
Unigene Cluster for IFNAR2: Interferon (alpha, beta and omega) receptor 2 Hs.708195 [show with all ESTs ] Unigene Representative Sequence: L41944 GeneLoc Exon Structure 5/9 Alternative Splicing Database (ASD) splice patterns (SP) for IFNAR2 (see all 9
) ExUns: 1a · 1b · 1c ^ 2a · 2b · 2c ^ 3 ^ 4a · 4b ^ 5 ^ 6 ^ 7a · 7b ^ 8a · 8b ^ 9 ^ 10a · 10b ^ 11 ^ 12 ^ 13a · 13b ^ 14a · 14b · 14c SP1 :                   -   -                 -     -   -         SP2 :       -             -   -           -       -               SP3 :                   -   -           -       -               SP4 :                   -   -           -       -     -   -         SP5 :                   -   -           -       -   -   -   -        
About this scheme ECgene alternative splicing isoforms for IFNAR2 7 Ensembl transcripts including schematic representations : ENST00000382238
ENST00000318433
ENST00000404220
ENST00000382264
ENST00000342101
ENST00000342136
ENST00000382241
Expression for IFNAR2
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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IFNAR2 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for IFNAR2 1 / 2 / 3
7 probe-sets matching IFNAR2 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: GCGTCGGGGASOURCE GeneReport for Unigene cluster: Hs.708195 Expression variation in blood from EXPOLDB for IFNAR2
Orthologs for IFNAR2
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for IFNAR2 gene from 5 species
About this table Species with no ortholog for IFNAR2 ENSEMBL Gene Tree for IFNAR2 Paralogs for IFNAR2 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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SNPs/Variants for IFNAR2 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for IFNAR2 (up to first 250kb)
Disorders & Mutations for IFNAR2
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 602376 disorders : 610424 UniProtKB/Swiss-Prot: INAR2_HUMAN, P48551
Defects in IFNAR2 are associated with susceptibility to hepatitis B virus infection (HBVinfection) [MIM:610424]. Approximately one third of all cases of cirrhosis and half of all casesof hepatocellular carcinoma can be attributed to chronic HBV infection. HBV infection may resultin subclinical or asymptomatic infection, acute self-limited hepatitis, or fulminant hepatitisrequiring liver transplantation
10/18 Novoseek disease relationships for IFNAR2 gene (see all 18
)
Disease
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
hepatitis c chronic
50.35
11
14996348 (3), 12141824 (2), 12518169 (1), 11170061 (1) (see all 7 )
measles
39.78
2
10627547 (1), 18715339 (1)
hepatitis c
37.34
8
12518169 (1), 11170061 (1), 9563926 (1), 15991303 (1) (see all 7 )
multiple sclerosis
37.26
2
15885318 (2)
hepatocellular carcinoma
36.20
6
19401692 (1), 16953837 (1), 10853022 (1), 17572015 (1) (see all 6 )
virus infection
34.98
3
9563926 (1), 12141824 (1)
carcinoma renal cell
21.35
3
10203606 (1), 10853333 (1), 17572016 (1)
chronic liver disease
19.35
4
15991303 (1), 18583243 (1)
response acute phase
10.36
1
9162009 (1)
breast cancer
5.41
1
1827277 (1)
About this table Human Gene Mutation Database : IFNAR2 Genetic Association Database: IFNAR2 Human Genome Epidemiology Navigator: IFNAR2 (11 documents)
Medical News for IFNAR2 (Possibly Related Articles in
Doctor's Guide )
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Publications for IFNAR2 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/201 PubMed articles for IFNAR2 gene (see all 201
): The human interferon alpha/beta receptor: characterization and molecular cloning. (PubMed id 8181059) 2, 3, 4 Novick D.... Rubinstein M. (1994) IFNAR1 and IFNAR2 polymorphisms confer susceptibility to multiple sclerosis but not to interferon-beta treatment response. (PubMed id 15885318) 1, 3, 6 Leyva L....Matesanz F. (2005) The human type I interferon receptor: NMR structure reveals the molecular basis of ligand binding. (PubMed id 12842042) 1, 3, 4 Chill J.H.... Anglister J. (2003) Pharmacogenomic analysis of interferon receptor polymorphisms in multiple sclerosis. (PubMed id 12618863) 1, 3, 6 Sriram U....Oksenberg J.R. (2003) Mutant U5A cells are complemented by an interferon-alpha beta receptor subunit generated by alternative processing of a new member of a cytokine receptor gene cluster. (PubMed id 7588638) 1, 3, 4 Lutfalla G.... Uze G. (1995) Genetic variations in humans associated with differences in the course of hepatitis C. (PubMed id 15063762) 3, 6 Saito T....Kawata S. (2004) Cloning and expression of a long form of the beta subunit of the interferon alpha beta receptor that is required for signaling. (PubMed id 7665574) 3, 4 Domanski P....Colamonici O.R. (1995) Soluble and membrane-anchored forms of the human IFN-alpha/beta receptor. (PubMed id 7759950) 3, 4 Novick D.... Rubinstein M. (1995) The combination of IFN-alpha2 and IFN-alpha8 exhibits synergistic antiproliferative activity on renal cell carcinoma (RCC) cell lines through increased binding affinity for IFNAR-2. (PubMed id 17572016) 1, 3 Tanimoto T....Fukuda S. (2007) Expression and regulation of IFNalpha/beta receptor in IFNbeta-treated patients with multiple sclerosis. (PubMed id 18971450) 1, 3 Gilli F....Bertolotto A. (2008)
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Genome Databases showing IFNAR2
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Specialized Databases showing IFNAR2 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for IFNAR2 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for IFNAR2:
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