IFNA5 Gene
protein-coding GIFtS: 53
GCID: GC09M021294
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|
interferon, alpha 5
| |
Aliases for IFNA5 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb) About This Section
|
| Aliases |
|---|
| Interferon, Alpha 51 2 | | IFN-Alpha-51 | | IFN-AlphaG1 | | INA52 | | Interferon Alpha-612 3 | | INFA52 | | Interferon Alpha-G2 3 | | Interferon Alpha-52 | | LeIF G2 3 | | |
Export aliases for IFNA5 gene to outside databasesPrevious GC identifers: GC09M021632 GC09M021505 |
Summaries for IFNA5 gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| UniProtKB/Swiss-Prot: IFNA5_HUMAN, P01569Function: Produced by macrophages, IFN-alpha have antiviral activities. Interferon stimulates the production of twoenzymes: a protein kinase and an oligoadenylate synthetase Gene Wiki entry for IFNA5
|
Genomic Views for IFNA5 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics) About This Section
| RefSeq DNA sequence:- NC_000009.11 NC_018920.1 NT_008413.18
Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the IFNA5 gene promoter: SRY AML1a C/EBPalpha Other transcription factors
Search SABiosciences Chromatin IP Primers for IFNA5
Epigenetics:
|  | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat IFNA5 |
Genomic Location: Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 9p22 Ensembl cytogenetic band: 9p21.3 HGNC cytogenetic band: 9p22IFNA5 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)

GeneLoc information about chromosome 9 GeneLoc Exon Structure GeneLoc location for GC09M021294: view genomic region
(about GC identifiers)
Start:
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21,304,613 bp from pter |
End:
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21,305,312 bp from pter |
Size:
|
700 bases |
Orientation:
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minus strand |
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Proteins for IFNA5 gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
| UniProtKB/Swiss-Prot: IFNA5_HUMAN, P01569 (See
protein sequence)Recommended Name: Interferon alpha-5 precursor Size: 189 amino acids; 21942 Da
Subcellular location: Secreted
Secondary accessions: Q52LX3Explore the universe of human proteins at neXtProt for IFNA5: NX_P01569
Post-translational modifications:
View modification sites using PhosphoSitePlus2View neXtProt modification sites for NX_P01569 IFNA5 Protein expression data from MOPED and PaxDb: About this image 
 REFSEQ proteins: NP_002160.1 ENSEMBL proteins: ENSP00000259555 Reactome Protein details: P01569 Human Recombinant Protein Products for IFNA5:
Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0005576 | extracellular region |
TAS | -- | | GO:0005615 | extracellular space |
IEA | -- |
IFNA5 for ontologies About GeneDecksing
IFNA5 Antibody Products: Assay Products for IFNA5: |
Protein
Domains / Families for IFNA5 gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
|
IFNA5 for domains About GeneDecksing
4 InterPro domains/families:Graphical View of Domain Structure for InterPro Entry P01569ProtoNet protein and cluster: P01569 1 Blocks protein family: IPB000471 Interferon alpha
UniProtKB/Swiss-Prot: IFNA5_HUMAN, P01569Similarity: Belongs to the alpha/beta interferon family |
Function for IFNA5 gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
inGenious Targeting Laboratory,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase,
shRNA from
OriGene,
Sirion Biotech,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Sirion Biotech,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
Sirion Biotech,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
| Molecular Function: UniProtKB/Swiss-Prot Summary: IFNA5_HUMAN, P01569Function: Produced by macrophages, IFN-alpha have antiviral activities. Interferon stimulates the production of twoenzymes: a protein kinase and an oligoadenylate synthetase Genatlas biochemistry entry for IFNA5:interferon type I,alpha 5,leukocyte
Gene Ontology (GO): 2 molecular function terms (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0005125 | cytokine activity |
IEA | -- | | GO:0005126 | cytokine receptor binding |
IEA | -- |
IFNA5 for ontologies About GeneDecksing
Animal Models:
Clone Products: |  | Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore | |  | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for IFNA5 OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for IFNA5 OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling 
| |  | GenScript: all cDNA clones in your preferred vector: IFNA5 (NM_002169) | |  | Sino Biological Human cDNA Clone for IFNA5 | |  | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for IFNA5 | |  | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat IFNA5  |
|
Pathways & Interactions for IFNA5 gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
| Unified GeneCards pathways - 5/20 super-pathways (see all 20) About this table  See pathways by source
| Super-pathway | contained gene-specific pathways |
|---|
| 1 | Regulation of IFNA signaling | | | 2 | Immune response_TLR3 and TLR4 induce TICAM1-specific signaling pathway | | | 3 | Cytokine Signaling in Immune system | | | 4 | Immune System | | | 5 | Toll-like receptor signaling pathway | |
Pathway sources See GeneCards unified pathways Show all pathways
2 EMD Millipore Pathways for IFNA5 4 Downloadable PowerPoint Slides of QIAGEN Pathway Central Maps for IFNA5 2 GeneGo (Thomson Reuters) Pathways for IFNA5 1 BioSystems Pathway for IFNA5 
5/11
Reactome Pathways for IFNA5 (see all 11)
5/12
Kegg Pathways (Kegg details for IFNA5) (see all 12):
IFNA5 for pathways About GeneDecksing
Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for IFNA5
1 Interacting protein for IFNA5 (P015693) via UniProtKB, MINT, STRING, and/or I2DAbout this table
Gene Ontology (GO): 5/7 biological process terms (GO ID links to tree view) (see all 7): About this table
IFNA5 for ontologies About GeneDecksing
|
Drugs & Compounds for IFNA5 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
IFNA5 for compounds About GeneDecksing
Browse Tocris compounds for IFNA5 1 Novoseek chemical compound relationship for IFNA5 gene About this table
| Compound |
-log (P-Val) |
Hits |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| tamoxifen |
51.7 |
1 |
1819622 (1) |
Search CenterWatch for drugs/clinical trials and news about IFNA5 
|
Transcripts for IFNA5 gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
Sirion Biotech,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
) About This Section
| REFSEQ mRNAs for IFNA5 gene: NM_002169.2 Unigene Cluster for IFNA5: Interferon, alpha 5 Hs.37113 Unigene Representative Sequence: V005411 Ensembl transcript including schematic representation, and UCSC links where relevant: ENST00000259555(uc011lnh.2)
Clone Products: |  | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for IFNA5 OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for IFNA5 OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling 
| |  | GenScript: all cDNA clones in your preferred vector: IFNA5 (NM_002169) | |  | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for IFNA5 | |  | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat IFNA5  |
Additional cDNA sequence: BC093755.1 BC093757.1 V00541.1 1 DOTS entry: DT.304672 1 AceView cDNA sequence: V00541 GeneLoc Exon Structure
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Expression for IFNA5 gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| IFNA5 expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this imageBioGPS CGAP TAG: --
 About this image See IFNA5 Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for IFNA5
SOURCE GeneReport for Unigene cluster: Hs.37113 SABiosciences Expression via Pathway-Focused PCR Arrays including IFNA5: | Interferons & Receptors in human mouse rat | | Common Cytokines in human mouse rat |
Primer Products: |  | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for IFNA5 Browse OriGene validated miRNA SYBR primer pairs
| |  | SABiosciences RT2 qPCR Primer Assay in human, mouse / rat IFNA5 | |  | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat IFNA5 | |  | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat IFNA5 |
Orthologs for IFNA5 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
|
This gene was present in the common ancestor of chordates.
Orthologs for IFNA5 gene from 3/7 species (see all 7) About this table
ENSEMBL Gene Tree for IFNA5 (if available) TreeFam Gene Tree for IFNA5 (if available)  |
Paralogs for IFNA5 gene(Paralogs according to
1HomoloGene, 2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68) About This Section
| Paralogs for IFNA5 gene
- IFNA72 IFNA22 IFNE2 IFNA42 IFNA142 IFNK2 IFNA12 IFNA212
- IFNA172 IFNA62 IFNB12 IFNA132 IFNW12 IFNA162 IFNA102 IFNA82
18 SIMAP similar genes for IFNA5 using alignment to 1 protein entry: IFNA5_HUMAN:IFNA17 IFNA4 IFNA10 IFNA14 IFNA21 IFNA IFNA1 IFNA13 IFNA6 IFNA7 IFN-2 IFNA16 IFNA2 IFNA2B IFNA8 IFNW1 IFNB1 IFNE
IFNA5 for paralogs About GeneDecksing
5 Pseudogenes.org Pseudogenes for IFNA5 PGOHUM00000235988 PGOHUM00000235989 PGOHUM00000235990 PGOHUM00000235991 PGOHUM00000236407
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Genomic Variants for IFNA5 gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
|
| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical significance | Chr 9 pos | Sequence | # | AA Chg | Type | More | # | Allele freq | Pop | Total sample | More |
|---|
HapMap Linkage Disequilibrium report for IFNA5 (21304613 - 21305312 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV): 2 variations for IFNA5 2 CNVs: 95872 1818  | SABiosciences Cancer Mutation PCR Assays |
|  | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing IFNA5 |
|
Disorders
/ Diseases for IFNA5 gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
|
IFNA5 for disorders About GeneDecksing
OMIM gene information: 147565
OMIM disorders: --
15 diseases for IFNA5: About MalaCardsdengue hemorrhagic fever hemorrhagic fever systemic lupus erythematosus lupus erythematosus bronchiolitis autoimmune thyroiditis hepatitis c hepatitis b measles hepatitis influenza thyroiditis melanoma breast cancer tuberculosis Human Genome Epidemiology (HuGE) Navigator: IFNA5 (9 documents) Export disorders for IFNA5 gene to outside databases
|
Publications for IFNA5 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
|
PubMed articles for IFNA5 gene, integrated from 9 sources (see all 68): (articles sorted by number of sources associating them with IFNA5) | |  | Utopia: connect your pdf to the dynamic world of online information |
- Signal peptide prediction based on analysis of experimentally verified cleavage sites. (PubMed id 15340161)1, 2 Zhang Z. and Henzel W.J. (2004)
- DNA sequence and analysis of human chromosome 9. (PubMed id 15164053)1, 2 Humphray S.J.... Dunham I. (2004)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
- Mapping of the shortest region of overlap of deletions of the short arm of chromosome 9 associated with human neoplasia. (PubMed id 1385305)1, 3 Olopade O.I....Diaz M.O. (1992)
- Structural relationship of human interferon alpha genes and pseudogenes. (PubMed id 4057246)1, 2 Henco K.... Weissmann C. (1985)
- The structure of eight distinct cloned human leukocyte interferon cDNAs. (PubMed id 6163083)1, 2 Goeddel D.V.... Gray P.W. (1981)
- Inhibitory effects of human immunodeficiency virus gp1 20 and Tat on CpG-A-induced inflammatory cytokines in plasmacytoid dendritic cel ls. (PubMed id 22814248)1 Fang M....Yao H. (2012)
- HIV-1 Gag-virus-like particles inhibit HIV-1 replicati on in dendritic cells and T cells through IFN-a-dependent upregulation of APOBEC 3G and 3F. (PubMed id 22739040)1 Chang M.O....Takaku H. (2012)
- Role of retroviral restriction factors in the interfer on-a-mediated suppression of HIV-1 in vivo. (PubMed id 22315404)1 Pillai S.K....Wong J.K. (2012)
- Interactions of pathological hallmark proteins: tubul in polymerization promoting protein/p25, beta-amyloid, and alpha-synuclein. (PubMed id 21832049)1 OlA!h J....OvA!di J. (2011)
|
External Searches for IFNA5 gene
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing IFNA5 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing IFNA5 gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing IFNA5 gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| Name | Description |
| PharmGKB entry for IFNA5 | Pharmacogenomics, SNPs, Pathways |
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| | |
About This Section
| Patent Information for IFNA5 gene: Search GeneIP for patents involving IFNA5
GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products for IFNA5 gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, LifeMap BioReagents, and Sirion Biotech, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences, In Situ Hybridization Assays from Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory) About This Section
|
 | |
 | |
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| | | | Browse OriGene Antibodies | | OriGene shRNA RFP for IFNA5 | | OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for IFNA5 | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for IFNA5 | | OriGene Protein Over-expression Lysate for IFNA5 | | Browse OriGene Fluorogenic Cell Assay Kits | | OriGene siRNA for IFNA5 | | Browse 3'-UTR reporter clones for miRNA target validation | | OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for IFNA5 | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for IFNA5 | | Browse OriGene GFP tagged cDNA clones in CMV expression vector | | Browse OriGene MicroRNA Expression Plasmids | | Browse OriGene basic RS shRNAs | | Browse OriGene validated miRNA SYBR primer pairs | | OriGene Purified Protein for IFNA5 | | OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling | | OriGene Custom Antibody Services for IFNA5 | | OriGene Custom Protein Services for IFNA5 | | OriGene Custom Immunoassay Development | | |
| |  |
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| | QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat IFNA5 | | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing IFNA5 | | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat IFNA5 | | QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat IFNA5 | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat IFNA5 | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat IFNA5 |
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| | | Search Tocris compounds for IFNA5 |
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 | | | | |  |  |  |  | | | Search ThermoFisher Antibodies for IFNA5 |
| | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat IFNA5 |
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