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Aliases for IFNA5 Gene

Aliases for IFNA5 Gene

  • Interferon Alpha 5 2 3 5
  • Interferon Alpha-61 3 4
  • Interferon Alpha-G 3 4
  • IFN-Alpha-5 3 4
  • LeIF G 3 4
  • Interferon, Alpha 5 2
  • Interferon Alpha-5 3
  • IFN-AlphaG 3
  • INFA5 3
  • INA5 3

External Ids for IFNA5 Gene

Previous GeneCards Identifiers for IFNA5 Gene

  • GC09M021632
  • GC09M021505

Summaries for IFNA5 Gene

GeneCards Summary for IFNA5 Gene

IFNA5 (Interferon Alpha 5) is a Protein Coding gene. Among its related pathways are Response to elevated platelet cytosolic Ca2+ and PI3K-Akt signaling pathway. GO annotations related to this gene include cytokine activity and type I interferon receptor binding. An important paralog of this gene is IFNA21.

UniProtKB/Swiss-Prot for IFNA5 Gene

  • Produced by macrophages, IFN-alpha have antiviral activities. Interferon stimulates the production of two enzymes: a protein kinase and an oligoadenylate synthetase.

Gene Wiki entry for IFNA5 Gene

Additional gene information for IFNA5 Gene

No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for IFNA5 Gene

Genomics for IFNA5 Gene

Regulatory Elements for IFNA5 Gene

Enhancers for IFNA5 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09H021334 1 ENCODE 11.1 -29.8 -29775 1.8 HDGF PKNOX1 ARID4B SIN3A DMAP1 ETS1 GLIS2 ELK1 ZNF143 ZNF207 IFNA13 IFNA5 IFNA12P IFNA8 IFNWP2 KLHL9 IFNA20P
GH09H021268 0.6 Ensembl 11.5 +37.1 37113 0.4 IKZF1 BMI1 EBF1 DPF2 IKZF2 SPI1 IFNA5 IFNA12P IFNA8 IFNWP2 IFNA13 MIR31 IFNA22P IFNA14
GH09H021450 0.4 ENCODE 11 -146.3 -146270 1.4 CEBPB IFNWP2 IFNA8 IFNA12P IFNA13 IFNA5 IFNWP19 IFNA1
GH09H020821 0.3 FANTOM5 14.2 +483.5 483469 0.3 IFNA5 IFNA21 SNORA30B LOC105375989
GH09H021333 0.2 ENCODE 11.1 -28.7 -28684 0.2 IFNA13 IFNA5 IFNA12P IFNA8 IFNWP2 KLHL9 IFNA20P
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around IFNA5 on UCSC Golden Path with GeneCards custom track

Genomic Locations for IFNA5 Gene

Genomic Locations for IFNA5 Gene
chr9:21,304,326-21,305,313
(GRCh38/hg38)
Size:
988 bases
Orientation:
Minus strand
chr9:21,304,613-21,305,312
(GRCh37/hg19)

Genomic View for IFNA5 Gene

Genes around IFNA5 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
IFNA5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for IFNA5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for IFNA5 Gene

Proteins for IFNA5 Gene

  • Protein details for IFNA5 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P01569-IFNA5_HUMAN
    Recommended name:
    Interferon alpha-5
    Protein Accession:
    P01569
    Secondary Accessions:
    • Q52LX3

    Protein attributes for IFNA5 Gene

    Size:
    189 amino acids
    Molecular mass:
    21942 Da
    Quaternary structure:
    No Data Available

neXtProt entry for IFNA5 Gene

Post-translational modifications for IFNA5 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for IFNA5 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for IFNA5 Gene

Domains & Families for IFNA5 Gene

Gene Families for IFNA5 Gene

HGNC:
Human Protein Atlas (HPA):
  • Predicted secreted proteins

Suggested Antigen Peptide Sequences for IFNA5 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

P01569

UniProtKB/Swiss-Prot:

IFNA5_HUMAN :
  • Belongs to the alpha/beta interferon family.
Family:
  • Belongs to the alpha/beta interferon family.
genes like me logo Genes that share domains with IFNA5: view

Function for IFNA5 Gene

Molecular function for IFNA5 Gene

GENATLAS Biochemistry:
interferon type I,alpha 5,leukocyte
UniProtKB/Swiss-Prot Function:
Produced by macrophages, IFN-alpha have antiviral activities. Interferon stimulates the production of two enzymes: a protein kinase and an oligoadenylate synthetase.

Gene Ontology (GO) - Molecular Function for IFNA5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005125 cytokine activity IBA --
GO:0005126 cytokine receptor binding TAS 6163083
GO:0005132 type I interferon receptor binding IBA --
genes like me logo Genes that share ontologies with IFNA5: view
genes like me logo Genes that share phenotypes with IFNA5: view

Clone Products

No data available for Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for IFNA5 Gene

Localization for IFNA5 Gene

Subcellular locations from UniProtKB/Swiss-Prot for IFNA5 Gene

Secreted.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for IFNA5 gene
Compartment Confidence
extracellular 5

Gene Ontology (GO) - Cellular Components for IFNA5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005576 extracellular region TAS --
GO:0005615 extracellular space IBA --
genes like me logo Genes that share ontologies with IFNA5: view

No data available for Subcellular locations from the Human Protein Atlas (HPA) for IFNA5 Gene

Pathways & Interactions for IFNA5 Gene

genes like me logo Genes that share pathways with IFNA5: view

Interacting Proteins for IFNA5 Gene

Selected Interacting proteins: P01569-IFNA5_HUMAN for IFNA5 Gene via IID

Gene Ontology (GO) - Biological Process for IFNA5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0002250 adaptive immune response IBA --
GO:0002286 T cell activation involved in immune response IBA --
GO:0002323 natural killer cell activation involved in immune response IBA --
GO:0006952 defense response IEA --
GO:0006959 humoral immune response IBA --
genes like me logo Genes that share ontologies with IFNA5: view

No data available for SIGNOR curated interactions for IFNA5 Gene

Drugs & Compounds for IFNA5 Gene

(1) Drugs for IFNA5 Gene - From: Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
genes like me logo Genes that share compounds with IFNA5: view

Transcripts for IFNA5 Gene

mRNA/cDNA for IFNA5 Gene

(1) REFSEQ mRNAs :
(6) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for IFNA5 Gene

No ASD Table

Relevant External Links for IFNA5 Gene

GeneLoc Exon Structure for
IFNA5
ECgene alternative splicing isoforms for
IFNA5

Expression for IFNA5 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for IFNA5 Gene

Protein differential expression in normal tissues from HIPED for IFNA5 Gene

This gene is overexpressed in Adrenal (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for IFNA5 Gene



Protein tissue co-expression partners for IFNA5 Gene

NURSA nuclear receptor signaling pathways regulating expression of IFNA5 Gene:

IFNA5

SOURCE GeneReport for Unigene cluster for IFNA5 Gene:

Hs.37113

Evidence on tissue expression from TISSUES for IFNA5 Gene

  • Spleen(4)
  • Nervous system(4)
genes like me logo Genes that share expression patterns with IFNA5: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for IFNA5 Gene

Orthologs for IFNA5 Gene

This gene was present in the common ancestor of mammals.

Orthologs for IFNA5 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia IFNA5 33 34
  • 98.94 (n)
cow
(Bos Taurus)
Mammalia -- 34
  • 64 (a)
ManyToMany
-- 34
  • 63 (a)
ManyToMany
-- 34
  • 63 (a)
ManyToMany
IFNAG 34 34
  • 63 (a)
ManyToMany
-- 34
  • 62 (a)
ManyToMany
-- 34
  • 62 (a)
ManyToMany
INFAF 34
  • 62 (a)
ManyToMany
IFNAA 34
  • 61 (a)
ManyToMany
IFNAH 34
  • 61 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Ifna13 34
  • 62 (a)
ManyToMany
Ifna6 34
  • 61 (a)
ManyToMany
Ifna1 34
  • 60 (a)
ManyToMany
Ifna12 34
  • 60 (a)
ManyToMany
Ifna5 34
  • 60 (a)
ManyToMany
Ifna9 34
  • 60 (a)
ManyToMany
Gm12597 34
  • 59 (a)
ManyToMany
Gm13280 34
  • 59 (a)
ManyToMany
Ifna11 34
  • 58 (a)
ManyToMany
Ifna14 34
  • 58 (a)
ManyToMany
Ifnab 34
  • 58 (a)
ManyToMany
Ifna2 34
  • 57 (a)
ManyToMany
Ifna7 34
  • 57 (a)
ManyToMany
Ifna4 34
  • 56 (a)
ManyToMany
Species where no ortholog for IFNA5 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for IFNA5 Gene

ENSEMBL:
Gene Tree for IFNA5 (if available)
TreeFam:
Gene Tree for IFNA5 (if available)

Paralogs for IFNA5 Gene

(18) SIMAP similar genes for IFNA5 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with IFNA5: view

Variants for IFNA5 Gene

Sequence variations from dbSNP and Humsavar for IFNA5 Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type
rs1000359945 -- 21,306,843(+) TTGTC(A/G)TGAAA intron-variant, upstream-variant-2KB
rs1000372993 -- 21,306,675(+) AACAA(C/T)AAGAA intron-variant, upstream-variant-2KB
rs1000719546 -- 21,304,317(+) CAAAA(A/T)AATCA intron-variant, downstream-variant-500B
rs1001910319 -- 21,306,145(+) CTCAG(A/G/T)ATCAA intron-variant, upstream-variant-2KB
rs1001920143 -- 21,305,906(+) AGACT(-/ATTAAA)ATTGA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for IFNA5 Gene

Variant ID Type Subtype PubMed ID
nsv968601 CNV duplication 23825009
nsv613757 CNV loss 21841781
nsv438097 CNV loss 16468122
esv3619961 CNV loss 21293372
esv2764150 CNV gain+loss 21179565

Variation tolerance for IFNA5 Gene

Residual Variation Intolerance Score: 79.2% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 2.44; 43.03% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for IFNA5 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
IFNA5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for IFNA5 Gene

Disorders for IFNA5 Gene

Relevant External Links for IFNA5

Genetic Association Database (GAD)
IFNA5
Human Genome Epidemiology (HuGE) Navigator
IFNA5
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
IFNA5

No disorders were found for IFNA5 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for IFNA5 Gene

Publications for IFNA5 Gene

  1. Dengue hemorrhagic fever is associated with polymorphisms in JAK1. (PMID: 20588308) Silva LK … Teixeira MG (European journal of human genetics : EJHG 2010) 3 45 60
  2. Associations of 9p21 variants with cutaneous malignant melanoma, nevi, and pigmentation phenotypes in melanoma-prone families with and without CDKN2A mutations. (PMID: 20574843) Yang XR … Goldstein AM (Familial cancer 2010) 3 45 60
  3. Interleukin-9 polymorphism in infants with respiratory syncytial virus infection: an opposite effect in boys and girls. (PMID: 20503287) Schuurhof A … Janssen R (Pediatric pulmonology 2010) 3 45 60
  4. Large-scale candidate gene analysis of spontaneous clearance of hepatitis C virus. (PMID: 20331378) Mosbruger TL … Thio CL (The Journal of infectious diseases 2010) 3 45 60
  5. Genetic susceptibility to respiratory syncytial virus bronchiolitis in preterm children is associated with airway remodeling genes and innate immune genes. (PMID: 19258923) Siezen CL … Janssen R (The Pediatric infectious disease journal 2009) 3 45 60

Products for IFNA5 Gene

Sources for IFNA5 Gene

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