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Aliases for IFNA17 Gene

Aliases for IFNA17 Gene

  • Interferon Alpha 17 2 3 5
  • Interferon Alpha-88 3 4
  • Interferon Alpha-I 3 4
  • Interferon Alpha-T 3 4
  • IFN-Alpha-17 3 4
  • LeIF I 3 4
  • Interferon Alpha-WA 3
  • Interferon Alpha-17 3
  • IFN-AlphaI 3
  • LEIF2C1 3
  • IFNA 3
  • INFA 3

External Ids for IFNA17 Gene

Previous GeneCards Identifiers for IFNA17 Gene

  • GC09M021554
  • GC09M021428
  • GC09M021217
  • GC09M021254
  • GC09M021259

Summaries for IFNA17 Gene

GeneCards Summary for IFNA17 Gene

IFNA17 (Interferon Alpha 17) is a Protein Coding gene. Diseases associated with IFNA17 include Adenosquamous Pancreas Carcinoma and Crimean-Congo Hemorrhagic Fever. Among its related pathways are Response to elevated platelet cytosolic Ca2+ and RIG-I/MDA5 mediated induction of IFN-alpha/beta pathways. GO annotations related to this gene include cytokine activity and type I interferon receptor binding. An important paralog of this gene is IFNA4.

UniProtKB/Swiss-Prot for IFNA17 Gene

  • Produced by macrophages, IFN-alpha have antiviral activities. Interferon stimulates the production of two enzymes: a protein kinase and an oligoadenylate synthetase.

Gene Wiki entry for IFNA17 Gene

Additional gene information for IFNA17 Gene

No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for IFNA17 Gene

Genomics for IFNA17 Gene

Regulatory Elements for IFNA17 Gene


Transcription factor binding sites by QIAGEN in the IFNA17 gene promoter:

Genomic Location for IFNA17 Gene

Chromosome:
9
Start:
21,227,243 bp from pter
End:
21,228,222 bp from pter
Size:
980 bases
Orientation:
Minus strand

Genomic View for IFNA17 Gene

Genes around IFNA17 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
IFNA17 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for IFNA17 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for IFNA17 Gene

Proteins for IFNA17 Gene

  • Protein details for IFNA17 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P01571-IFN17_HUMAN
    Recommended name:
    Interferon alpha-17
    Protein Accession:
    P01571
    Secondary Accessions:
    • Q14639
    • Q4KMT4
    • Q5VZ53
    • Q7M4Q4

    Protein attributes for IFNA17 Gene

    Size:
    189 amino acids
    Molecular mass:
    21728 Da
    Quaternary structure:
    No Data Available

neXtProt entry for IFNA17 Gene

Post-translational modifications for IFNA17 Gene

No Post-translational modifications

Other Protein References for IFNA17 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for IFNA17 Gene

Domains & Families for IFNA17 Gene

Gene Families for IFNA17 Gene

HGNC:
Human Protein Atlas (HPA):
  • Predicted secreted proteins

Suggested Antigen Peptide Sequences for IFNA17 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

P01571

UniProtKB/Swiss-Prot:

IFN17_HUMAN :
  • Belongs to the alpha/beta interferon family.
Family:
  • Belongs to the alpha/beta interferon family.
genes like me logo Genes that share domains with IFNA17: view

Function for IFNA17 Gene

Molecular function for IFNA17 Gene

GENATLAS Biochemistry:
interferon type I,alpha 17,leukocyte
UniProtKB/Swiss-Prot Function:
Produced by macrophages, IFN-alpha have antiviral activities. Interferon stimulates the production of two enzymes: a protein kinase and an oligoadenylate synthetase.

Gene Ontology (GO) - Molecular Function for IFNA17 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005125 cytokine activity IBA --
GO:0005126 cytokine receptor binding IEA --
GO:0005132 type I interferon receptor binding TAS 3891272
genes like me logo Genes that share ontologies with IFNA17: view
genes like me logo Genes that share phenotypes with IFNA17: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for IFNA17
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for IFNA17 Gene

Localization for IFNA17 Gene

Subcellular locations from UniProtKB/Swiss-Prot for IFNA17 Gene

Secreted.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for IFNA17 gene
Compartment Confidence
extracellular 5
nucleus 2
cytosol 1

Gene Ontology (GO) - Cellular Components for IFNA17 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005576 extracellular region TAS --
GO:0005615 extracellular space IBA --
genes like me logo Genes that share ontologies with IFNA17: view

No data available for Subcellular locations from the Human Protein Atlas (HPA) for IFNA17 Gene

Pathways & Interactions for IFNA17 Gene

genes like me logo Genes that share pathways with IFNA17: view

Gene Ontology (GO) - Biological Process for IFNA17 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0002250 adaptive immune response IBA --
GO:0002286 T cell activation involved in immune response IBA --
GO:0002323 natural killer cell activation involved in immune response IBA --
GO:0006952 defense response IEA --
GO:0006959 humoral immune response IBA --
genes like me logo Genes that share ontologies with IFNA17: view

No data available for SIGNOR curated interactions for IFNA17 Gene

Drugs & Compounds for IFNA17 Gene

No Compound Related Data Available

Transcripts for IFNA17 Gene

mRNA/cDNA for IFNA17 Gene

(1) REFSEQ mRNAs :
(10) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for IFNA17
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for IFNA17 Gene

No ASD Table

Relevant External Links for IFNA17 Gene

GeneLoc Exon Structure for
IFNA17
ECgene alternative splicing isoforms for
IFNA17

Expression for IFNA17 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for IFNA17 Gene

NURSA nuclear receptor signaling pathways regulating expression of IFNA17 Gene:

IFNA17

SOURCE GeneReport for Unigene cluster for IFNA17 Gene:

Hs.282276

Evidence on tissue expression from TISSUES for IFNA17 Gene

  • Kidney(2)
genes like me logo Genes that share expression patterns with IFNA17: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for IFNA17 Gene

Orthologs for IFNA17 Gene

This gene was present in the common ancestor of mammals.

Orthologs for IFNA17 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia LOC473191 33
  • 98.41 (n)
-- 34
  • 97 (a)
OneToMany
cow
(Bos Taurus)
Mammalia -- 34
  • 63 (a)
ManyToMany
IFNAH 34
  • 63 (a)
ManyToMany
-- 34
  • 62 (a)
ManyToMany
-- 34
  • 62 (a)
ManyToMany
-- 34
  • 62 (a)
ManyToMany
IFNAG 34 34
  • 62 (a)
ManyToMany
-- 34
  • 61 (a)
ManyToMany
IFNAA 34
  • 61 (a)
ManyToMany
INFAF 34
  • 61 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm12597 34
  • 60 (a)
ManyToMany
Gm13280 34
  • 60 (a)
ManyToMany
Ifna1 34
  • 60 (a)
ManyToMany
Ifna12 34
  • 60 (a)
ManyToMany
Ifna13 34
  • 60 (a)
ManyToMany
Ifna5 34
  • 60 (a)
ManyToMany
Ifna6 34
  • 60 (a)
ManyToMany
Ifna9 34
  • 59 (a)
ManyToMany
Ifna14 34
  • 58 (a)
ManyToMany
Ifnab 34
  • 58 (a)
ManyToMany
Ifna11 34
  • 57 (a)
ManyToMany
Ifna2 34
  • 57 (a)
ManyToMany
Ifna7 34
  • 57 (a)
ManyToMany
Ifna4 34
  • 56 (a)
ManyToMany
Species where no ortholog for IFNA17 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for IFNA17 Gene

ENSEMBL:
Gene Tree for IFNA17 (if available)
TreeFam:
Gene Tree for IFNA17 (if available)

Paralogs for IFNA17 Gene

(19) SIMAP similar genes for IFNA17 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with IFNA17: view

Variants for IFNA17 Gene

Sequence variations from dbSNP and Humsavar for IFNA17 Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type
rs1001108525 -- 21,228,360(+) ATGTG(-/TT)TAAGA upstream-variant-2KB
rs1001455121 -- 21,228,498(+) TACTA(-/TG)TATAC upstream-variant-2KB
rs1002265079 -- 21,228,555(+) ACGTA(A/C)AGAAT upstream-variant-2KB
rs1003269903 -- 21,229,492(+) AAATA(A/T)AAAAG upstream-variant-2KB
rs1004332482 -- 21,228,806(+) TATGA(A/C)GCTTT upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for IFNA17 Gene

Variant ID Type Subtype PubMed ID
dgv7474n100 CNV loss 25217958
esv2738277 CNV deletion 23290073
esv2738279 CNV deletion 23290073
esv2764150 CNV gain+loss 21179565
esv3573167 CNV loss 25503493
esv3619955 CNV loss 21293372
nsv1021574 CNV gain 25217958
nsv1035128 CNV gain 25217958
nsv613756 CNV loss 21841781
nsv968599 CNV duplication 23825009

Variation tolerance for IFNA17 Gene

Residual Variation Intolerance Score: 93.8% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 4.02; 60.37% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for IFNA17 Gene

Human Gene Mutation Database (HGMD)
IFNA17
SNPedia medical, phenotypic, and genealogical associations of SNPs for
IFNA17

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for IFNA17 Gene

Disorders for IFNA17 Gene

MalaCards: The human disease database

(3) MalaCards diseases for IFNA17 Gene - From: HGMD, DISEASES, and GeneCards

Disorder Aliases PubMed IDs
adenosquamous pancreas carcinoma
  • adenosquamous carcinoma of pancreas
crimean-congo hemorrhagic fever
  • chf congo virus
malignant melanoma, somatic
  • dysplastic nevus syndrome
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for IFNA17

Genetic Association Database (GAD)
IFNA17
Human Genome Epidemiology (HuGE) Navigator
IFNA17
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
IFNA17
genes like me logo Genes that share disorders with IFNA17: view

No data available for UniProtKB/Swiss-Prot and Genatlas for IFNA17 Gene

Publications for IFNA17 Gene

  1. Association between IFNA genotype and the risk of sarcoidosis. (PMID: 15004750) Akahoshi M … Shirakawa T (Human genetics 2004) 3 22 45 60
  2. Interferon, alpha 17 (IFNA17) Ile184Arg polymorphism and cervical cancer risk. (PMID: 12490311) Kim JW … Lee HP (Cancer letters 2003) 3 22 45 60
  3. Large-scale candidate gene analysis of spontaneous clearance of hepatitis C virus. (PMID: 20331378) Mosbruger TL … Thio CL (The Journal of infectious diseases 2010) 3 45 60
  4. Associations of 9p21 variants with cutaneous malignant melanoma, nevi, and pigmentation phenotypes in melanoma-prone families with and without CDKN2A mutations. (PMID: 20574843) Yang XR … Goldstein AM (Familial cancer 2010) 3 45 60
  5. Dengue hemorrhagic fever is associated with polymorphisms in JAK1. (PMID: 20588308) Silva LK … Teixeira MG (European journal of human genetics : EJHG 2010) 3 45 60

Products for IFNA17 Gene

Sources for IFNA17 Gene

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