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Aliases for IFNA12P Gene

Subcategory (RNA class) for IFNA12P Gene

lncRNA

Aliases for IFNA12P Gene

  • Interferon Alpha 12, Pseudogene 2 3 5
  • Interferon Pseudogene 12 2 3
  • IFNWP12 3
  • IFNP12 3

External Ids for IFNA12P Gene

ORGUL Members for IFNA12P Gene

Previous HGNC Symbols for IFNA12P Gene

  • IFNP12

Previous GeneCards Identifiers for IFNA12P Gene

  • GC09P021408
  • GC09P021412
  • GC09P021413
  • GC09P021414
  • GC09P021415
  • GC09P021416
  • GC09P021417
  • GC09P021418
  • GC09P021419
  • GC09P021425
  • GC09P021428
  • GC09P021432
  • GC09P021435
  • GC09P021442
  • GC09P021447

Summaries for IFNA12P Gene

GeneCards Summary for IFNA12P Gene

IFNA12P (Interferon Alpha 12, Pseudogene) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for IFNA12P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for IFNA12P Gene

Genomics for IFNA12P Gene

GeneHancer (GH) Regulatory Elements for IFNA12P Gene

Promoters and enhancers for IFNA12P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09I021402 Enhancer 0.6 Ensembl 550.8 -0.1 -80 0.4 CTCF L3MBTL2 EBF1 ZNF335 ZBTB26 IKZF2 ZBTB17 EZH2 IFNA12P IFNA11P
GH09I021334 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE 11.1 -68.0 -67993 1.8 HDGF PKNOX1 ARID4B SIN3A DMAP1 ZNF48 ETS1 GLIS2 ELK1 ZNF207 KLHL9 IFNA13 IFNA5 IFNA12P IFNA8 IFNWP2 IFNA20P
GH09I021252 Enhancer 0.8 Ensembl ENCODE 11.7 -149.8 -149816 0.7 CTCF PKNOX1 ZNF654 FOXA2 SIN3A RAD21 POLR2A ZNF143 SMC3 RUNX3 IFNA12P IFNA8 IFNWP2 IFNA13 IFNA20P IFNA14 IFNA22P
GH09I021503 Enhancer 0.7 Ensembl ENCODE 10 +103.0 103006 4.3 MAFF JUN STAT3 CEBPB RCOR1 ZBTB33 EP300 IFNWP2 IFNA8 IFNA12P IFNA20P IFNE GC09P021512 MIR31HG
GH09I021350 Promoter 0.5 EPDnew 11.6 -52.1 -52105 0.1 IFNA6 IFNA12P IFNA8 IFNWP2 KLHL9
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around IFNA12P on UCSC Golden Path with GeneCards custom track

Genomic Locations for IFNA12P Gene

Genomic Locations for IFNA12P Gene
chr9:21,403,081-21,403,651
(GRCh38/hg38)
Size:
571 bases
Orientation:
Plus strand
chr9:21,403,080-21,403,650
(GRCh37/hg19)

Genomic View for IFNA12P Gene

Genes around IFNA12P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
IFNA12P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for IFNA12P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for IFNA12P Gene

Proteins for IFNA12P Gene

Post-translational modifications for IFNA12P Gene

No Post-translational modifications

No data available for DME Specific Peptides for IFNA12P Gene

Domains & Families for IFNA12P Gene

Gene Families for IFNA12P Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with IFNA12P: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for IFNA12P Gene

Function for IFNA12P Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for IFNA12P Gene

Localization for IFNA12P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for IFNA12P Gene

Pathways & Interactions for IFNA12P Gene

SuperPathways for IFNA12P Gene

No Data Available

Interacting Proteins for IFNA12P Gene

Gene Ontology (GO) - Biological Process for IFNA12P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for IFNA12P Gene

Drugs & Compounds for IFNA12P Gene

No Compound Related Data Available

Transcripts for IFNA12P Gene

mRNA/cDNA for IFNA12P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for IFNA12P Gene

No ASD Table

Relevant External Links for IFNA12P Gene

GeneLoc Exon Structure for
IFNA12P
ECgene alternative splicing isoforms for
IFNA12P

Expression for IFNA12P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for IFNA12P Gene

mRNA differential expression in normal tissues according to GTEx for IFNA12P Gene

This gene is overexpressed in Brain - Putamen (basal ganglia) (x7.2), Brain - Caudate (basal ganglia) (x6.9), Brain - Hippocampus (x5.0), Brain - Spinal cord (cervical c-1) (x4.8), Brain - Cortex (x4.7), and Brain - Nucleus accumbens (basal ganglia) (x4.0).

NURSA nuclear receptor signaling pathways regulating expression of IFNA12P Gene:

IFNA12P
genes like me logo Genes that share expression patterns with IFNA12P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for IFNA12P Gene

Orthologs for IFNA12P Gene

Evolution for IFNA12P Gene

ENSEMBL:
Gene Tree for IFNA12P (if available)
TreeFam:
Gene Tree for IFNA12P (if available)

No data available for Orthologs for IFNA12P Gene

Paralogs for IFNA12P Gene

No data available for Paralogs for IFNA12P Gene

Variants for IFNA12P Gene

Additional Variant Information for IFNA12P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
IFNA12P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for IFNA12P Gene

Disorders for IFNA12P Gene

No disorders were found for IFNA12P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for IFNA12P Gene

Publications for IFNA12P Gene

  1. Structural relationship of human interferon alpha genes and pseudogenes. (PMID: 4057246) Henco K … Schmid J (Journal of molecular biology 1985) 2 3 58
  2. Characterization of the type I interferon locus and identification of novel genes. (PMID: 15233997) Hardy MP … Hertzog PJ (Genomics 2004) 3 58

Products for IFNA12P Gene

Sources for IFNA12P Gene

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