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Aliases for IFNA12P Gene

Subcategory (RNA class) for IFNA12P Gene

lncRNA

Aliases for IFNA12P Gene

  • Interferon Alpha 12, Pseudogene 2 3 5
  • Interferon Pseudogene 12 2 3
  • IFNWP12 3
  • IFNP12 3

External Ids for IFNA12P Gene

ORGUL Members for IFNA12P Gene

Previous HGNC Symbols for IFNA12P Gene

  • IFNP12

Previous GeneCards Identifiers for IFNA12P Gene

  • GC09P021408
  • GC09P021412
  • GC09P021413
  • GC09P021414
  • GC09P021415
  • GC09P021416
  • GC09P021417
  • GC09P021418
  • GC09P021419
  • GC09P021425
  • GC09P021428
  • GC09P021432
  • GC09P021435

Summaries for IFNA12P Gene

GeneCards Summary for IFNA12P Gene

IFNA12P (Interferon Alpha 12, Pseudogene) is a Pseudogene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for IFNA12P Gene

Genomics for IFNA12P Gene

Regulatory Elements for IFNA12P Gene

Enhancers for IFNA12P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09G021334 1 ENCODE 11.1 -68.0 -67994 1.8 HDGF PKNOX1 WRNIP1 ARID4B SIN3A DMAP1 ZNF2 ZNF48 YY1 ETS1 IFNA13 IFNA5 IFNA12P IFNA8 IFNWP2 KLHL9 IFNA20P
GH09G021252 0.9 Ensembl ENCODE 11.7 -149.8 -149817 0.7 CTCF ZNF654 PKNOX1 TRIM22 RAD21 FOXA1 SMARCA4 SMC3 PRDM1 IFNA12P IFNA8 IFNWP2 IFNA13 IFNA20P IFNA14 IFNA22P
GH09G021503 0.9 Ensembl ENCODE 10 +103.0 103007 4.3 JUN CEBPB EP300 JUND MAFF POLR2A STAT3 RCOR1 FOS MAFK IFNWP2 IFNA8 IFNA12P IFNA20P IFNE GC09P021512
GH09G021268 0.6 Ensembl 10.8 -134.9 -134881 0.4 MTA2 CBX2 BMI1 EBF1 DPF2 TBX21 IKZF1 RELB IKZF2 SPI1 IFNA5 IFNA12P IFNA8 IFNWP2 IFNA13 MIR31 IFNA22P IFNA14
GH09G021450 0.4 ENCODE 11.5 +48.5 48502 1.4 CEBPB NFE2L2 IFNWP2 IFNA8 IFNA12P IFNA13 IFNA5 IFNWP19 IFNA1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around IFNA12P on UCSC Golden Path with GeneCards custom track

Genomic Location for IFNA12P Gene

Chromosome:
9
Start:
21,403,081 bp from pter
End:
21,403,651 bp from pter
Size:
571 bases
Orientation:
Plus strand

Genomic View for IFNA12P Gene

Genes around IFNA12P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
IFNA12P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for IFNA12P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for IFNA12P Gene

Proteins for IFNA12P Gene

Post-translational modifications for IFNA12P Gene

No Post-translational modifications

No data available for DME Specific Peptides for IFNA12P Gene

Domains & Families for IFNA12P Gene

Gene Families for IFNA12P Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with IFNA12P: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for IFNA12P Gene

Function for IFNA12P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for IFNA12P Gene

Localization for IFNA12P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for IFNA12P Gene

Pathways & Interactions for IFNA12P Gene

SuperPathways for IFNA12P Gene

No Data Available

Interacting Proteins for IFNA12P Gene

Gene Ontology (GO) - Biological Process for IFNA12P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for IFNA12P Gene

Drugs & Compounds for IFNA12P Gene

No Compound Related Data Available

Transcripts for IFNA12P Gene

mRNA/cDNA for IFNA12P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for IFNA12P Gene

No ASD Table

Relevant External Links for IFNA12P Gene

GeneLoc Exon Structure for
IFNA12P
ECgene alternative splicing isoforms for
IFNA12P

Expression for IFNA12P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for IFNA12P Gene

mRNA differential expression in normal tissues according to GTEx for IFNA12P Gene

This gene is overexpressed in Brain - Putamen (basal ganglia) (x7.2), Brain - Caudate (basal ganglia) (x6.9), Brain - Hippocampus (x5.0), Brain - Spinal cord (cervical c-1) (x4.8), Brain - Cortex (x4.7), and Brain - Nucleus accumbens (basal ganglia) (x4.0).

NURSA nuclear receptor signaling pathways regulating expression of IFNA12P Gene:

IFNA12P
genes like me logo Genes that share expression patterns with IFNA12P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for IFNA12P Gene

Orthologs for IFNA12P Gene

Evolution for IFNA12P Gene

ENSEMBL:
Gene Tree for IFNA12P (if available)
TreeFam:
Gene Tree for IFNA12P (if available)

No data available for Orthologs for IFNA12P Gene

Paralogs for IFNA12P Gene

No data available for Paralogs for IFNA12P Gene

Variants for IFNA12P Gene

Relevant External Links for IFNA12P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
IFNA12P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for IFNA12P Gene

Disorders for IFNA12P Gene

No disorders were found for IFNA12P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for IFNA12P Gene

Publications for IFNA12P Gene

  1. Structural relationship of human interferon alpha genes and pseudogenes. (PMID: 4057246) Henco K. … Weissmann C. (J. Mol. Biol. 1985) 2 3 64
  2. Characterization of the type I interferon locus and identification of novel genes. (PMID: 15233997) Hardy M.P. … Hertzog P.J. (Genomics 2004) 3 64

Products for IFNA12P Gene

Sources for IFNA12P Gene

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