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Aliases for IFITM4P Gene

Aliases for IFITM4P Gene

  • Interferon Induced Transmembrane Protein 4 Pseudogene 2 3 5
  • Interferon-Induced Transmembrane Protein 3 (Interferon-Inducible Protein 1-8U) 3
  • DJ377H14.5 3

External Ids for IFITM4P Gene

Previous GeneCards Identifiers for IFITM4P Gene

  • GC06M029826
  • GC06M029719
  • GC06M029522
  • GC06M029720
  • GC06M029723
  • GC06M029728
  • GC06M029736
  • GC06M029743
  • GC06M029754
  • GC06M029755
  • GC06M029843
  • GC06M029863

Summaries for IFITM4P Gene

GeneCards Summary for IFITM4P Gene

IFITM4P (Interferon Induced Transmembrane Protein 4 Pseudogene) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for IFITM4P Gene

Genomics for IFITM4P Gene

Regulatory Elements for IFITM4P Gene

Enhancers for IFITM4P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06F029648 1.1 Ensembl ENCODE 29.7 +101.3 101334 2.0 HDGF PKNOX1 ATF1 CREB3L1 SIN3A GLI4 ZNF48 BRCA1 ZNF2 YY1 IFITM4P HCG9P5 PPP1R10 TRIM26 MICE ZFP57 HLA-J ZNRD1ASP HCG4P7 HLA-F-AS1
GH06F030065 0.6 ENCODE 24.8 -315.7 -315658 3.0 HDGF PKNOX1 ARNT CREB3L1 ZFP64 ARID4B SIN3A DMAP1 YBX1 ZNF2 HCG4P3 PPP1R10 IFITM4P HLA-A TRIM26 PAIP1P1 RPL7P4 HCG4P7 HLA-P UBQLN1P1
GH06F029751 0.5 ENCODE 22.8 -1.7 -1696 2.0 PKNOX1 CREB3L1 WRNIP1 ZFP64 ARID4B SIN3A ZNF2 YY1 CBX5 ZNF143 RPL23AP1 MICE HCG4P5 IFITM4P ZNRD1ASP DHX16 ZFP57 ABCF1 HLA-A ETF1P1
GH06F029762 1.1 Ensembl ENCODE 22.6 -12.6 -12648 2.5 KLF1 JUN MAX ZIC2 GATA3 POLR2A SCRT2 PRDM10 FOSL2 FOS RPL23AP1 HLA-A HCG4P5 IFITM4P ZFP57 HLA-J MICD MICE HCG4P7 ZNRD1
GH06F029757 0.2 ENCODE 22.4 -8.0 -7988 3.3 PKNOX1 CBX3 TAL1 ZFP64 BACH1 CHD7 ETS1 ZNF316 POLR2A SCRT2 RPL23AP1 ZFP57 HCG4P5 IFITM4P MICE ZNRD1 HCG4 ZNRD1ASP ENSG00000270896 ENSG00000272236
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around IFITM4P on UCSC Golden Path with GeneCards custom track

Promoters for IFITM4P Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000025124 -1652 2001 PKNOX1 CREB3L1 WRNIP1 ZFP64 ARID4B SIN3A ZNF2 YY1 CBX5 ZNF143

Genomic Location for IFITM4P Gene

Chromosome:
6
Start:
29,750,729 bp from pter
End:
29,751,148 bp from pter
Size:
420 bases
Orientation:
Minus strand

Genomic View for IFITM4P Gene

Genes around IFITM4P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
IFITM4P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for IFITM4P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for IFITM4P Gene

Post-translational modifications for IFITM4P Gene

No Post-translational modifications

No data available for DME Specific Peptides for IFITM4P Gene

Domains & Families for IFITM4P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for IFITM4P Gene

Function for IFITM4P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for IFITM4P Gene

Localization for IFITM4P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for IFITM4P Gene

Pathways & Interactions for IFITM4P Gene

SuperPathways for IFITM4P Gene

No Data Available

Interacting Proteins for IFITM4P Gene

Gene Ontology (GO) - Biological Process for IFITM4P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for IFITM4P Gene

Transcripts for IFITM4P Gene

mRNA/cDNA for IFITM4P Gene

(1) Additional mRNA sequences :
(3) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for IFITM4P Gene

Interferon induced transmembrane protein 4 pseudogene:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for IFITM4P Gene

No ASD Table

Relevant External Links for IFITM4P Gene

GeneLoc Exon Structure for
IFITM4P
ECgene alternative splicing isoforms for
IFITM4P

Expression for IFITM4P Gene

mRNA expression in normal human tissues for IFITM4P Gene

NURSA nuclear receptor signaling pathways regulating expression of IFITM4P Gene:

IFITM4P

SOURCE GeneReport for Unigene cluster for IFITM4P Gene:

Hs.450189
genes like me logo Genes that share expression patterns with IFITM4P: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for IFITM4P Gene

Orthologs for IFITM4P Gene

Evolution for IFITM4P Gene

ENSEMBL:
Gene Tree for IFITM4P (if available)
TreeFam:
Gene Tree for IFITM4P (if available)

No data available for Orthologs for IFITM4P Gene

Paralogs for IFITM4P Gene

No data available for Paralogs for IFITM4P Gene

Variants for IFITM4P Gene

Sequence variations from dbSNP and Humsavar for IFITM4P Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs111324950 -- 29,751,255(+) TATCT(C/G/T)GATAA upstream-variant-2KB
rs111551789 -- 29,752,500(+) CCTCA(A/G)GACTC upstream-variant-2KB
rs111906770 -- 29,752,003(+) ATCAT(C/T)ATAAT upstream-variant-2KB
rs112473393 -- 29,750,504(+) AATAG(C/T)AACTG downstream-variant-500B, upstream-variant-2KB
rs113609068 -- 29,750,974(+) GACAC(-/A)GGAGG nc-transcript-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for IFITM4P Gene

Variant ID Type Subtype PubMed ID
dgv992e201 CNV deletion 23290073
esv25966 CNV gain+loss 19812545
esv2731768 CNV deletion 23290073
nsv1074389 CNV deletion 25765185
nsv10809 CNV gain 18304495
nsv1122126 CNV deletion 24896259
nsv1144137 CNV deletion 24896259
nsv428139 CNV gain 18775914
nsv508397 CNV deletion 20534489
nsv969373 CNV duplication 23825009

Relevant External Links for IFITM4P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
IFITM4P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for IFITM4P Gene

Disorders for IFITM4P Gene

Relevant External Links for IFITM4P

Genetic Association Database (GAD)
IFITM4P
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
IFITM4P

No disorders were found for IFITM4P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for IFITM4P Gene

Publications for IFITM4P Gene

  1. The broad-spectrum antiviral functions of IFIT and IFITM proteins. (PMID: 23237964) Diamond M.S. … Farzan M. (Nat. Rev. Immunol. 2013) 3 64
  2. A genome-wide scan of Ashkenazi Jewish Crohn's disease suggests novel susceptibility loci. (PMID: 22412388) Kenny E.E. … Peter I. (PLoS Genet. 2012) 46 64
  3. Genome-wide association study identifies variants in the MHC class I, IL10, and IL23R-IL12RB2 regions associated with BehAset's disease. (PMID: 20622878) Remmers E.F. … GA1l A. (Nat. Genet. 2010) 46 64
  4. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64

Products for IFITM4P Gene

Sources for IFITM4P Gene

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