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Aliases for IFI30 Gene

Aliases for IFI30 Gene

  • Interferon, Gamma-Inducible Protein 30 2 3
  • Legumaturain 2 3 4
  • GILT 3 4 6
  • Gamma-Interferon-Inducible Lysosomal Thiol Reductase 2 3
  • Interferon Gamma-Inducible Protein 30 Preproprotein 2 3
  • Gamma-Interferon-Inducible Protein IP-30 3 4
  • IP30 3 4
  • EC 1.8.-.- 4
  • IFI-30 3
  • IP-30 3

External Ids for IFI30 Gene

Previous GeneCards Identifiers for IFI30 Gene

  • GC19P018778
  • GC19P018676
  • GC19P018129
  • GC19P018145
  • GC19P018284
  • GC19P017848
  • GC19P018401

Summaries for IFI30 Gene

Entrez Gene Summary for IFI30 Gene

  • The protein encoded by this gene is a lysosomal thiol reductase that at low pH can reduce protein disulfide bonds. The enzyme is expressed constitutively in antigen-presenting cells and induced by gamma-interferon in other cell types. This enzyme has an important role in MHC class II-restricted antigen processing. [provided by RefSeq, Jul 2008]

GeneCards Summary for IFI30 Gene

IFI30 (Interferon, Gamma-Inducible Protein 30) is a Protein Coding gene. Diseases associated with IFI30 include endometritis and neuromyelitis optica. Among its related pathways are Class I MHC mediated antigen processing and presentation and Interferon Signaling. GO annotations related to this gene include oxidoreductase activity, acting on a sulfur group of donors.

UniProtKB/Swiss-Prot for IFI30 Gene

  • Lysosomal thiol reductase that can reduce protein disulfide bonds. May facilitate the complete unfolding of proteins destined for lysosomal degradation. Plays an important role in antigen processing. Facilitates the generation of MHC class II-restricted epitodes from disulfide bond-containing antigen by the endocytic reduction of disulfide bonds (By similarity). Facilitates also MHC class I-restricted recognition of exogenous antigens containing disulfide bonds by CD8+ T-cells or crosspresentation (By similarity).

Gene Wiki entry for IFI30 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for IFI30 Gene

Genomics for IFI30 Gene

Regulatory Elements for IFI30 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for IFI30 Gene

Start:
18,173,162 bp from pter
End:
18,178,124 bp from pter
Size:
4,963 bases
Orientation:
Plus strand

Genomic View for IFI30 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for IFI30 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for IFI30 Gene

Proteins for IFI30 Gene

  • Protein details for IFI30 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P13284-GILT_HUMAN
    Recommended name:
    Gamma-interferon-inducible lysosomal thiol reductase
    Protein Accession:
    P13284
    Secondary Accessions:
    • Q76MF9
    • Q8NEI4
    • Q8WU77
    • Q9UL08

    Protein attributes for IFI30 Gene

    Size:
    250 amino acids
    Molecular mass:
    27964 Da
    Quaternary structure:
    • Dimer; disulfide-linked.
    Miscellaneous:
    • Both precursor form and mature form have thiol reductase activity
    SequenceCaution:
    • Sequence=AAA36105.1; Type=Erroneous termination; Positions=251; Note=Translated as stop.; Evidence={ECO:0000305}; Sequence=AAA36105.1; Type=Frameshift; Positions=146, 174; Evidence={ECO:0000305}; Sequence=AAA36105.1; Type=Miscellaneous discrepancy; Note=Chimeric cDNA. N-terminal sequence identical to a region of chromosome 11.; Evidence={ECO:0000305}; Sequence=AAF04618.1; Type=Miscellaneous discrepancy; Note=Chimeric cDNA. N-terminal sequence identical to a region of chromosome 11.; Evidence={ECO:0000305};

neXtProt entry for IFI30 Gene

Proteomics data for IFI30 Gene at MOPED

Post-translational modifications for IFI30 Gene

  • N-glycosylated. Sugar chains contain mannose-6-phosphate.
  • Synthesized as a 35 kDa precursor which is then processed into the mature 30 kDa form via cleavage of N-terminal and C-terminal propeptides. Processing of the precursor is mediated by multiple lysosomal proteases
  • Glycosylation at Asn63, Asn95, and Asn108
  • Modification sites at PhosphoSitePlus

Other Protein References for IFI30 Gene

ENSEMBL proteins:
Reactome Protein details:
REFSEQ proteins:

Antibody Products

No data available for DME Specific Peptides for IFI30 Gene

Domains for IFI30 Gene

Protein Domains for IFI30 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for IFI30 Gene

Graphical View of Domain Structure for InterPro Entry

P13284

UniProtKB/Swiss-Prot:

GILT_HUMAN :
  • P13284
Family:
  • Belongs to the GILT family.
genes like me logo Genes that share domains with IFI30: view

No data available for Gene Families for IFI30 Gene

Function for IFI30 Gene

Molecular function for IFI30 Gene

GENATLAS Biochemistry: interferon, gamma-inducible protein 30,present and inducible by gamma-interferon (IFN gamma) in cells of the hematopoietic lineage and absent but inducible in non-hematopoietic cells,may be lysosomal in location.
UniProtKB/Swiss-Prot BiophysicochemicalProperties: Kinetic parameters: KM=1200 uM for F(ab)2 fragment when denatured {ECO:0000269 PubMed:10639150}; KM=10 uM for F(ab)2 fragment {ECO:0000269 PubMed:10639150}; Note=Kinetic parameters shown are for mature enzyme.; pH dependence: Optimum pH is 4-5. {ECO:0000269 PubMed:10639150};
UniProtKB/Swiss-Prot Function: Lysosomal thiol reductase that can reduce protein disulfide bonds. May facilitate the complete unfolding of proteins destined for lysosomal degradation. Plays an important role in antigen processing. Facilitates the generation of MHC class II-restricted epitodes from disulfide bond-containing antigen by the endocytic reduction of disulfide bonds (By similarity). Facilitates also MHC class I-restricted recognition of exogenous antigens containing disulfide bonds by CD8+ T-cells or crosspresentation (By similarity).
UniProtKB/Swiss-Prot Induction: Expressed constitutively in antigen-presenting cells and induced by IFN-gamma in other cell types.

Enzyme Numbers (IUBMB) for IFI30 Gene

Gene Ontology (GO) - Molecular Function for IFI30 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IMP 10639150
genes like me logo Genes that share ontologies with IFI30: view

Phenotypes for IFI30 Gene

MGI mutant phenotypes for IFI30:
inferred from 1 alleles
GenomeRNAi human phenotypes for IFI30:
genes like me logo Genes that share phenotypes with IFI30: view

Animal Models for IFI30 Gene

MGI Knock Outs for IFI30:

Animal Model Products

CRISPR Products

miRNA for IFI30 Gene

miRTarBase miRNAs that target IFI30

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for IFI30

In Situ Assay Products

Flow Cytometry Products

No data available for Transcription Factor Targeting and HOMER Transcription for IFI30 Gene

Localization for IFI30 Gene

Subcellular locations from UniProtKB/Swiss-Prot for IFI30 Gene

Secreted. Lysosome.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for IFI30 Gene COMPARTMENTS Subcellular localization image for IFI30 gene
Compartment Confidence
extracellular 5
lysosome 5
vacuole 5
plasma membrane 4
nucleus 2
cytosol 1
endosome 1

Gene Ontology (GO) - Cellular Components for IFI30 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005576 extracellular region IEA --
GO:0005737 cytoplasm IDA --
GO:0005764 lysosome IDA 10639150
GO:0005886 plasma membrane IDA --
GO:0030054 cell junction IDA --
genes like me logo Genes that share ontologies with IFI30: view

Pathways for IFI30 Gene

genes like me logo Genes that share pathways with IFI30: view

Pathways by source for IFI30 Gene

PCR Array Products

  • Pathway & Disease-focused RT² Profiler PCR Arrays

Gene Ontology (GO) - Biological Process for IFI30 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0019221 cytokine-mediated signaling pathway TAS --
GO:0019886 antigen processing and presentation of exogenous peptide antigen via MHC class II TAS --
GO:0042590 antigen processing and presentation of exogenous peptide antigen via MHC class I ISS --
GO:0048147 negative regulation of fibroblast proliferation IEA --
GO:0050821 protein stabilization IEA --
genes like me logo Genes that share ontologies with IFI30: view

Compounds for IFI30 Gene

(1) Novoseek inferred chemical compound relationships for IFI30 Gene

Compound -log(P) Hits PubMed IDs
cysteine 19.5 2
genes like me logo Genes that share compounds with IFI30: view

Transcripts for IFI30 Gene

mRNA/cDNA for IFI30 Gene

Unigene Clusters for IFI30 Gene

Interferon, gamma-inducible protein 30:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for IFI30

Primer Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for IFI30 Gene

No ASD Table

Relevant External Links for IFI30 Gene

GeneLoc Exon Structure for
IFI30
ECgene alternative splicing isoforms for
IFI30

Expression for IFI30 Gene

mRNA expression in normal human tissues for IFI30 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for IFI30 Gene

SOURCE GeneReport for Unigene cluster for IFI30 Gene Hs.14623

genes like me logo Genes that share expressions with IFI30: view

In Situ Assay Products

No data available for mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for IFI30 Gene

Orthologs for IFI30 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for IFI30 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia IFI30 35
  • 99.6 (n)
  • 99.6 (a)
IFI30 36
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia IFI30 35
  • 72.3 (n)
  • 64.89 (a)
IFI30 36
  • 59 (a)
OneToOne
dog
(Canis familiaris)
Mammalia IFI30 36
  • 65 (a)
OneToOne
LOC476669 35
  • 77.63 (n)
  • 70.22 (a)
mouse
(Mus musculus)
Mammalia Ifi30 35
  • 72.62 (n)
  • 66.67 (a)
Ifi30 16
Ifi30 36
  • 59 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia IFI30 36
  • 40 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia IFI30 36
  • 45 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Ifi30 35
  • 71.82 (n)
  • 69.08 (a)
chicken
(Gallus gallus)
Aves GILT 36
  • 42 (a)
OneToOne
IFI30 35
  • 62.96 (n)
  • 55.03 (a)
lizard
(Anolis carolinensis)
Reptilia IFI30 36
  • 44 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia Xl.13109 35
tropical clawed frog
(Silurana tropicalis)
Amphibia ifi30 35
  • 56.82 (n)
  • 51.81 (a)
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.9935 35
zebrafish
(Danio rerio)
Actinopterygii ifi30 36
  • 37 (a)
OneToMany
IFI30 (2 of 2) 36
  • 38 (a)
OneToMany
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP009747 35
  • 48.79 (n)
  • 34.64 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG10157 36
  • 26 (a)
OneToMany
CG13822 36
  • 22 (a)
OneToMany
CG41378 35
  • 41.92 (n)
  • 32.52 (a)
CG41378 36
  • 24 (a)
OneToMany
CG9427 36
  • 22 (a)
OneToMany
CG9796 36
  • 20 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea C02D5.2 36
  • 18 (a)
OneToMany
F37H8.5 36
  • 25 (a)
OneToMany
pqn-48 36
  • 17 (a)
OneToMany
R07E5.4 36
  • 22 (a)
OneToMany
Y18D10A.2 36
  • 22 (a)
OneToMany
ZK669.2 36
  • 20 (a)
OneToMany
ZK669.3 36
  • 20 (a)
OneToMany
thale cress
(Arabidopsis thaliana)
eudicotyledons AT1G07080 35
  • 47.7 (n)
  • 37.23 (a)
rice
(Oryza sativa)
Liliopsida Os03g0295800 35
  • 53.68 (n)
  • 41.28 (a)
sea squirt
(Ciona savignyi)
Ascidiacea CSA.3249 36
  • 27 (a)
OneToOne
Species with no ortholog for IFI30:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for IFI30 Gene

ENSEMBL:
Gene Tree for IFI30 (if available)
TreeFam:
Gene Tree for IFI30 (if available)

Paralogs for IFI30 Gene

No data available for Paralogs for IFI30 Gene

Variants for IFI30 Gene

Sequence variations from dbSNP and Humsavar for IFI30 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type MAF
rs2082 -- 18,172,288(-) AGAGT(G/T)GGCCT upstream-variant-2KB
rs2921 -- 18,178,000(-) GTAAG(C/G/T)AGCAG utr-variant-3-prime
rs7125 -- 18,177,259(+) CCACC(A/G)CACGA reference, synonymous-codon
rs15057 -- 18,178,012(+) AACTG(A/G)AAAAT utr-variant-3-prime
rs15953 -- 18,177,945(+) AAGGC(A/G/T)AGTGG utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for IFI30 Gene

Variant ID Type Subtype PubMed ID
nsv833773 CNV Loss 17160897
dgv3771n71 CNV Loss 21882294
dgv3772n71 CNV Loss 21882294
nsv911244 CNV Gain 21882294
dgv3773n71 CNV Loss 21882294
nsv833774 CNV Loss 17160897
nsv833775 CNV Loss 17160897
dgv3774n71 CNV Loss 21882294
nsv911254 CNV Loss 21882294
nsv911256 CNV Loss 21882294
nsv911260 CNV Loss 21882294

Relevant External Links for IFI30 Gene

HapMap Linkage Disequilibrium report
IFI30
Human Gene Mutation Database (HGMD)
IFI30

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for IFI30 Gene

Disorders for IFI30 Gene

MalaCards: The human disease database

MalaCards: The human disease database. (2) Diseases for IFI30 Gene including...

Search for IFI30 Gene in MalaCards »

(1) University of Copenhagen DISEASES for IFI30 Gene

(2) Novoseek inferred disease relationships for IFI30 Gene

Disease -log(P) Hits PubMed IDs
melanoma 32.3 11
tumors 0 4

Relevant External Links for IFI30

Genetic Association Database (GAD)
IFI30
Human Genome Epidemiology (HuGE) Navigator
IFI30
genes like me logo Genes that share disorders with IFI30: view

No data available for UniProtKB/Swiss-Prot for IFI30 Gene

Publications for IFI30 Gene

  1. Enzymatic reduction of disulfide bonds in lysosomes: characterization of a gamma-interferon-inducible lysosomal thiol reductase (GILT). (PMID: 10639150) Arunachalam B. … Cresswell P. (Proc. Natl. Acad. Sci. U.S.A. 2000) 2 3 4 23
  2. Gamma-interferon-inducible lysosomal thiol reductase (GILT). Maturation, activity, and mechanism of action. (PMID: 10852914) Phan U.T. … Cresswell P. (J. Biol. Chem. 2000) 3 4 23
  3. Molecular and biochemical characterization of a novel gamma- interferon-inducible protein. (PMID: 3136170) Luster A.D. … Ravetch J.V. (J. Biol. Chem. 1988) 2 3 4
  4. Multiple species express thiol oxidoreductases related to GILT. (PMID: 11491538) Phan U.T. … Cresswell P. (Immunogenetics 2001) 3 23
  5. Absence of gamma-interferon-inducible lysosomal thiol reductase in melanomas disrupts T cell recognition of select immunodominant epitopes. (PMID: 12021307) Haque M.A. … Blum J.S. (J. Exp. Med. 2002) 3 23

Products for IFI30 Gene

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