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Aliases for IFI27L1 Gene

Aliases for IFI27L1 Gene

  • Interferon, Alpha-Inducible Protein 27-Like 1 2 3
  • Family With Sequence Similarity 14, Member B 2 3
  • Interferon-Stimulated Gene 12c Protein 3 4
  • FAM14B 3 4
  • Interferon Alpha-Inducible Protein 27-Like Protein 1 3
  • ISG12(C) Protein 3
  • ISG12(C) 4
  • ISG12C 3

External Ids for IFI27L1 Gene

Previous Symbols for IFI27L1 Gene

  • FAM14B

Summaries for IFI27L1 Gene

GeneCards Summary for IFI27L1 Gene

IFI27L1 (Interferon, Alpha-Inducible Protein 27-Like 1) is a Protein Coding gene. An important paralog of this gene is IFI27L2.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for IFI27L1 Gene

Genomics for IFI27L1 Gene

Genomic Location for IFI27L1 Gene

Start:
94,081,282 bp from pter
End:
94,103,846 bp from pter
Size:
22,565 bases
Orientation:
Plus strand

Genomic View for IFI27L1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for IFI27L1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for IFI27L1 Gene

Regulatory Elements for IFI27L1 Gene

Proteins for IFI27L1 Gene

  • Protein details for IFI27L1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96BM0-I27L1_HUMAN
    Recommended name:
    Interferon alpha-inducible protein 27-like protein 1
    Protein Accession:
    Q96BM0
    Secondary Accessions:

    Protein attributes for IFI27L1 Gene

    Size:
    104 amino acids
    Molecular mass:
    9549 Da
    Quaternary structure:
    No Data Available

    Three dimensional structures from OCA and Proteopedia for IFI27L1 Gene

neXtProt entry for IFI27L1 Gene

Proteomics data for IFI27L1 Gene at MOPED

Post-translational modifications for IFI27L1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for IFI27L1 Gene

Domains for IFI27L1 Gene

Protein Domains for IFI27L1 Gene

InterPro:
Blocks:
ProtoNet:

Suggested Antigen Peptide Sequences for IFI27L1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q96BM0

UniProtKB/Swiss-Prot:

I27L1_HUMAN
Family:
  • Belongs to the IFI6/IFI27 family.:
    • Q96BM0
genes like me logo Genes that share domains with IFI27L1: view

No data available for Gene Families for IFI27L1 Gene

Function for IFI27L1 Gene

Phenotypes for IFI27L1 Gene

GenomeRNAi human phenotypes for IFI27L1:
genes like me logo Genes that share phenotypes with IFI27L1: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for IFI27L1 Gene

Localization for IFI27L1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for IFI27L1 Gene

Membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for IFI27L1 Gene COMPARTMENTS Subcellular localization image for IFI27L1 gene
Compartment Confidence
extracellular 3
lysosome 1
plasma membrane 1

Gene Ontology (GO) - Cellular Components for IFI27L1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with IFI27L1: view

Pathways for IFI27L1 Gene

SuperPathways for IFI27L1 Gene

No Data Available

Interacting Proteins for IFI27L1 Gene

Gene Ontology (GO) - Biological Process for IFI27L1 Gene

None

No data available for Pathways by source for IFI27L1 Gene

Transcripts for IFI27L1 Gene

Unigene Clusters for IFI27L1 Gene

Interferon, alpha-inducible protein 27-like 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for IFI27L1 Gene

ExUns: 1a · 1b · 1c · 1d · 1e · 1f · 1g ^ 2 ^ 3 ^ 4 ^ 5a · 5b · 5c ^ 6 ^ 7a · 7b ^ 8a · 8b ^ 9a · 9b · 9c ^ 10
SP1: - - - - - - -
SP2: - - - - - - -
SP3: - - - - - -
SP4: - - - - - - - -
SP5: - - - - - -
SP6: - - - -
SP7: -
SP8: - - - - - - - - - - - - -
SP9:
SP10: - - - - - -
SP11: - - - - - - - - -

Relevant External Links for IFI27L1 Gene

GeneLoc Exon Structure for
IFI27L1
ECgene alternative splicing isoforms for
IFI27L1

Expression for IFI27L1 Gene

mRNA expression in normal human tissues for IFI27L1 Gene

mRNA differential expression in normal tissues according to GTEx for IFI27L1 Gene

This gene is overexpressed in Testis (6.2).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for IFI27L1 Gene

SOURCE GeneReport for Unigene cluster for IFI27L1 Gene Hs.19414

genes like me logo Genes that share expressions with IFI27L1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for IFI27L1 Gene

Orthologs for IFI27L1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for IFI27L1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia IFI27L1 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia IFI27 36
  • 27 (a)
OneToMany
dog
(Canis familiaris)
Mammalia -- 36
  • 67 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Ifi27l2a 36
  • 60 (a)
ManyToMany
Ifi27l2b 36
  • 19 (a)
ManyToMany
chicken
(Gallus gallus)
Aves IFI27L2 36
  • 52 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 36
  • 55 (a)
ManyToMany
-- 36
  • 23 (a)
ManyToMany
zebrafish
(Danio rerio)
Actinopterygii si:dkey-188i13.10 36
  • 44 (a)
ManyToMany
si:dkey-188i13.11 36
  • 47 (a)
ManyToMany
si:dkey-188i13.6 36
  • 37 (a)
ManyToMany
si:dkey-188i13.7 36
  • 33 (a)
ManyToMany
si:dkey-188i13.9 36
  • 33 (a)
ManyToMany
zgc:123068 36
  • 45 (a)
ManyToMany
zgc:152791 36
  • 48 (a)
ManyToMany
Species with no ortholog for IFI27L1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for IFI27L1 Gene

ENSEMBL:
Gene Tree for IFI27L1 (if available)
TreeFam:
Gene Tree for IFI27L1 (if available)

Paralogs for IFI27L1 Gene

Paralogs for IFI27L1 Gene

Selected SIMAP similar genes for IFI27L1 Gene using alignment to 8 proteins:

genes like me logo Genes that share paralogs with IFI27L1: view

Variants for IFI27L1 Gene

Sequence variations from dbSNP and Humsavar for IFI27L1 Gene

SNP ID Clin Chr 14 pos Sequence Context AA Info Type MAF
rs748762 -- 94,098,804(-) GAATC(A/G)TCAAG intron-variant, upstream-variant-2KB
rs748763 -- 94,098,573(-) gttgc(A/G)ggttg intron-variant, upstream-variant-2KB
rs876851 -- 94,102,368(-) AGGCA(A/G)TCCAA intron-variant
rs882269 -- 94,100,213(-) TTTTA(A/G)CTCAT intron-variant, upstream-variant-2KB
rs998518 -- 94,088,204(-) AGAAG(A/C)AGCCG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for IFI27L1 Gene

Variant ID Type Subtype PubMed ID
esv34067 CNV Loss 18971310
esv2669953 CNV Deletion 23128226

Relevant External Links for IFI27L1 Gene

HapMap Linkage Disequilibrium report
IFI27L1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for IFI27L1 Gene

Disorders for IFI27L1 Gene

Relevant External Links for IFI27L1

Genetic Association Database (GAD)
IFI27L1
Human Genome Epidemiology (HuGE) Navigator
IFI27L1
genes like me logo Genes that share disorders with IFI27L1: view

No data available for UniProtKB/Swiss-Prot for IFI27L1 Gene

Publications for IFI27L1 Gene

  1. Identification of a novel gene family that includes the interferon- inducible human genes 6-16 and ISG12. (PMID: 14728724) Parker N. … Porter A.C.G. (BMC Genomics 2004) 3 4
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  3. Genome-wide association study of anthropometric traits in Korcula Island, Croatia. (PMID: 19260139) Polasek O. … Rudan I. (Croat. Med. J. 2009) 3 48
  4. New genetic associations detected in a host response study to hepatitis B vaccine. (PMID: 20237496) Davila S. … Seielstad M. (Genes Immun. 2010) 3
  5. Facile backbone structure determination of human membrane proteins by NMR spectroscopy. (PMID: 22609626) Klammt C. … Choe S. (Nat. Methods 2012) 4

Products for IFI27L1 Gene

Sources for IFI27L1 Gene

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