Free for academic non-profit institutions. Other users need a Commercial license

Aliases for IFFO2 Gene

Aliases for IFFO2 Gene

  • Intermediate Filament Family Orphan 2 2 3 5

External Ids for IFFO2 Gene

Previous GeneCards Identifiers for IFFO2 Gene

  • GC01M019106
  • GC01M019230
  • GC01M017474

Summaries for IFFO2 Gene

GeneCards Summary for IFFO2 Gene

IFFO2 (Intermediate Filament Family Orphan 2) is a Protein Coding gene. GO annotations related to this gene include structural molecule activity. An important paralog of this gene is IFFO1.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for IFFO2 Gene

Genomics for IFFO2 Gene

Regulatory Elements for IFFO2 Gene

Enhancers for IFFO2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F018946 1.1 FANTOM5 ENCODE 21.9 +4.5 4506 10.9 PKNOX1 MLX WRNIP1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 IFFO2 EMC1 ALDH4A1 AKR7A3 UBR4 AKR7A2 ENSG00000255275
GH01F019007 0.5 ENCODE 19.4 -49.5 -49518 0.3 SCRT1 POLR2A ZNF652 IFFO2 GC01P019006 GC01P019027
GH01F019006 0.8 Ensembl ENCODE 17.5 -50.9 -50947 2.0 SOX13 TFAP4 SAP130 ZMYM3 CHD4 ZNF644 RAD21 HBP1 RARA POLR2A IFFO2 EMC1 GC01P019006 GC01P019027
GH01F018998 0.7 FANTOM5 ENCODE 17.1 -42.0 -41971 1.3 HDAC1 ATF1 TBL1XR1 TAL1 ZNF316 NCOR1 ADNP HES1 SMARCE1 RNF2 IFFO2 TAS1R2 EMC1 GC01P019006
GH01F018999 0.5 ENCODE 14 -42.7 -42716 0.2 BCOR HDAC1 ATF1 TBL1XR1 TAL1 NFXL1 ZNF316 NCOR1 POLR2A ADNP IFFO2 GC01P019006
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around IFFO2 on UCSC Golden Path with GeneCards custom track

Promoters for IFFO2 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001742240 686 2801 MLX ZNF133 ZFP64 ARID4B SIN3A DMAP1 ZNF48 ZNF2 ZNF121 ZNF766

Genomic Location for IFFO2 Gene

Chromosome:
1
Start:
18,904,280 bp from pter
End:
18,956,686 bp from pter
Size:
52,407 bases
Orientation:
Minus strand

Genomic View for IFFO2 Gene

Genes around IFFO2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
IFFO2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for IFFO2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for IFFO2 Gene

Proteins for IFFO2 Gene

  • Protein details for IFFO2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5TF58-IFFO2_HUMAN
    Recommended name:
    Intermediate filament family orphan 2
    Protein Accession:
    Q5TF58
    Secondary Accessions:
    • Q9H7K0

    Protein attributes for IFFO2 Gene

    Size:
    517 amino acids
    Molecular mass:
    57328 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=CAI23419.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};

neXtProt entry for IFFO2 Gene

Post-translational modifications for IFFO2 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for IFFO2 Gene

No data available for DME Specific Peptides for IFFO2 Gene

Domains & Families for IFFO2 Gene

Gene Families for IFFO2 Gene

Protein Domains for IFFO2 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for IFFO2 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with IFFO2: view

No data available for UniProtKB/Swiss-Prot for IFFO2 Gene

Function for IFFO2 Gene

Gene Ontology (GO) - Molecular Function for IFFO2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005198 structural molecule activity IEA --
genes like me logo Genes that share ontologies with IFFO2: view

Animal Model Products

Inhibitory RNA Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for IFFO2 Gene

Localization for IFFO2 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for IFFO2 Gene COMPARTMENTS Subcellular localization image for IFFO2 gene
Compartment Confidence
cytoskeleton 2
cytosol 2
nucleus 2
endoplasmic reticulum 1
peroxisome 1

Gene Ontology (GO) - Cellular Components for IFFO2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005882 intermediate filament IEA --
genes like me logo Genes that share ontologies with IFFO2: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for IFFO2 Gene

Pathways & Interactions for IFFO2 Gene

SuperPathways for IFFO2 Gene

No Data Available

Interacting Proteins for IFFO2 Gene

Gene Ontology (GO) - Biological Process for IFFO2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for IFFO2 Gene

Transcripts for IFFO2 Gene

mRNA/cDNA for IFFO2 Gene

(2) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for IFFO2 Gene

Intermediate filament family orphan 2:
Representative Sequences:

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for IFFO2 Gene

No ASD Table

Relevant External Links for IFFO2 Gene

GeneLoc Exon Structure for
IFFO2
ECgene alternative splicing isoforms for
IFFO2

Expression for IFFO2 Gene

mRNA expression in normal human tissues for IFFO2 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for IFFO2 Gene

This gene is overexpressed in Skin - Not Sun Exposed (Suprapubic) (x9.5), Skin - Sun Exposed (Lower leg) (x8.9), and Esophagus - Mucosa (x4.0).

Protein differential expression in normal tissues from HIPED for IFFO2 Gene

This gene is overexpressed in Brain (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for IFFO2 Gene



Protein tissue co-expression partners for IFFO2 Gene

NURSA nuclear receptor signaling pathways regulating expression of IFFO2 Gene:

IFFO2

SOURCE GeneReport for Unigene cluster for IFFO2 Gene:

Hs.466625
genes like me logo Genes that share expression patterns with IFFO2: view

Primer Products

No data available for mRNA Expression by UniProt/SwissProt for IFFO2 Gene

Orthologs for IFFO2 Gene

This gene was present in the common ancestor of chordates.

Orthologs for IFFO2 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia IFFO2 34 35
  • 98.64 (n)
dog
(Canis familiaris)
Mammalia IFFO2 34
  • 95.29 (n)
cow
(Bos Taurus)
Mammalia -- 35
  • 94 (a)
OneToMany
rat
(Rattus norvegicus)
Mammalia Iffo2 34
  • 93.03 (n)
oppossum
(Monodelphis domestica)
Mammalia -- 35
  • 93 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 35
  • 91 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Iffo2 34 16 35
  • 90.17 (n)
chicken
(Gallus gallus)
Aves -- 35
  • 85 (a)
OneToMany
IFFO2 34
  • 79.5 (n)
lizard
(Anolis carolinensis)
Reptilia -- 35
  • 83 (a)
OneToMany
tropical clawed frog
(Silurana tropicalis)
Amphibia iffo2 34
  • 78.72 (n)
zebrafish
(Danio rerio)
Actinopterygii LOC100150502 34
  • 69.08 (n)
CABZ01030889.1 35
  • 65 (a)
ManyToMany
iffo2a 35
  • 64 (a)
ManyToMany
Species where no ortholog for IFFO2 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for IFFO2 Gene

ENSEMBL:
Gene Tree for IFFO2 (if available)
TreeFam:
Gene Tree for IFFO2 (if available)

Paralogs for IFFO2 Gene

Paralogs for IFFO2 Gene

(4) SIMAP similar genes for IFFO2 Gene using alignment to 3 proteins:

genes like me logo Genes that share paralogs with IFFO2: view

Variants for IFFO2 Gene

Sequence variations from dbSNP and Humsavar for IFFO2 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs10524803 -- 18,929,666(+) AGAGG(-/ACT)TGAGA intron-variant
rs10708996 -- 18,913,824(+) TGTTG(-/T)TTTTT intron-variant
rs111242343 -- 18,926,017(+) GATGG(A/T)TGGAT intron-variant
rs111314259 -- 18,910,216(+) ATGGA(C/T)GGACG intron-variant
rs111328471 -- 18,919,375(+) AAGGC(A/G)AGCTG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for IFFO2 Gene

Variant ID Type Subtype PubMed ID
nsv1142751 CNV deletion 24896259
nsv512722 CNV insertion 21212237
nsv834347 CNV gain 17160897

Variation tolerance for IFFO2 Gene

Gene Damage Index Score: 3.43; 54.58% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for IFFO2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
IFFO2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for IFFO2 Gene

Disorders for IFFO2 Gene

Relevant External Links for IFFO2

Genetic Association Database (GAD)
IFFO2
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
IFFO2

No disorders were found for IFFO2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for IFFO2 Gene

Publications for IFFO2 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 2 3 4 64
  2. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3 64
  3. Genome-wide association analysis of eosinophilic esophagitis provides insight into the tissue specificity of this allergic disease. (PMID: 25017104) Kottyan L.C. … Rothenberg M.E. (Nat. Genet. 2014) 3 64
  4. Systematic analysis of human protein complexes identifies chromosome segregation proteins. (PMID: 20360068) Hutchins J.R. … Peters J.M. (Science 2010) 3 64
  5. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory S.G. … Bentley D.R. (Nature 2006) 4 64

Products for IFFO2 Gene

Sources for IFFO2 Gene

Content
Loading form....