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Aliases for IFFO1 Gene

Aliases for IFFO1 Gene

  • Intermediate Filament Family Orphan 1 2 3 5
  • IFFO 3 4
  • Intermediate Filament Family Orphan 2
  • Intermediate Filament-Like MGC:2625 3
  • Tumor Antigen HOM-TES-103 4
  • HOM-TES-103 3

External Ids for IFFO1 Gene

Previous HGNC Symbols for IFFO1 Gene

  • IFFO

Previous GeneCards Identifiers for IFFO1 Gene

  • GC12M006521
  • GC12M006648

Summaries for IFFO1 Gene

Entrez Gene Summary for IFFO1 Gene

  • This gene is a member of the intermediate filament family. Intermediate filaments are proteins which are primordial components of the cytoskeleton and nuclear envelope. The proteins encoded by the members of this gene family are evolutionarily and structurally related but have limited sequence homology, with the exception of the central rod domain. Multiple alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2010]

GeneCards Summary for IFFO1 Gene

IFFO1 (Intermediate Filament Family Orphan 1) is a Protein Coding gene. GO annotations related to this gene include structural molecule activity. An important paralog of this gene is IFFO2.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for IFFO1 Gene

Genomics for IFFO1 Gene

Regulatory Elements for IFFO1 Gene

Promoters for IFFO1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around IFFO1 on UCSC Golden Path with GeneCards custom track

Genomic Location for IFFO1 Gene

Chromosome:
12
Start:
6,538,375 bp from pter
End:
6,556,083 bp from pter
Size:
17,709 bases
Orientation:
Minus strand

Genomic View for IFFO1 Gene

Genes around IFFO1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
IFFO1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for IFFO1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for IFFO1 Gene

Proteins for IFFO1 Gene

  • Protein details for IFFO1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q0D2I5-IFFO1_HUMAN
    Recommended name:
    Intermediate filament family orphan 1
    Protein Accession:
    Q0D2I5
    Secondary Accessions:
    • Q24JT6
    • Q7L5J9
    • Q7Z5X4
    • Q9BQ46

    Protein attributes for IFFO1 Gene

    Size:
    559 amino acids
    Molecular mass:
    61979 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AF124432; Type=Frameshift; Positions=119, 226, 384; Evidence={ECO:0000305}; Sequence=AF124432; Type=Frameshift; Positions=121, 227, 385; Evidence={ECO:0000305};

    Alternative splice isoforms for IFFO1 Gene

neXtProt entry for IFFO1 Gene

Proteomics data for IFFO1 Gene at MOPED

Post-translational modifications for IFFO1 Gene

  • Ubiquitination at Lys 78, Lys 103, and Lys 113
  • Modification sites at PhosphoSitePlus

No data available for DME Specific Peptides for IFFO1 Gene

Domains & Families for IFFO1 Gene

Gene Families for IFFO1 Gene

Protein Domains for IFFO1 Gene

Suggested Antigen Peptide Sequences for IFFO1 Gene

Graphical View of Domain Structure for InterPro Entry

Q0D2I5

UniProtKB/Swiss-Prot:

IFFO1_HUMAN :
  • Belongs to the intermediate filament family.
Family:
  • Belongs to the intermediate filament family.
genes like me logo Genes that share domains with IFFO1: view

Function for IFFO1 Gene

Phenotypes for IFFO1 Gene

genes like me logo Genes that share phenotypes with IFFO1: view

Animal Model Products

Inhibitory RNA Products

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for IFFO1 Gene

Localization for IFFO1 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for IFFO1 Gene COMPARTMENTS Subcellular localization image for IFFO1 gene
Compartment Confidence
cytoskeleton 3
cytosol 3
nucleus 2
mitochondrion 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for IFFO1 Gene

Pathways & Interactions for IFFO1 Gene

SuperPathways for IFFO1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for IFFO1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for IFFO1 Gene

Drugs & Compounds for IFFO1 Gene

No Compound Related Data Available

Transcripts for IFFO1 Gene

mRNA/cDNA for IFFO1 Gene

Unigene Clusters for IFFO1 Gene

Intermediate filament family orphan 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for IFFO1 Gene

ExUns: 1a · 1b ^ 2a · 2b ^ 3 ^ 4 ^ 5 ^ 6 ^ 7a · 7b ^ 8 ^ 9 ^ 10 ^ 11a · 11b
SP1:
SP2:
SP3:
SP4: - - -
SP5: - -
SP6:
SP7:

Relevant External Links for IFFO1 Gene

GeneLoc Exon Structure for
IFFO1
ECgene alternative splicing isoforms for
IFFO1

Expression for IFFO1 Gene

mRNA expression in normal human tissues for IFFO1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for IFFO1 Gene

This gene is overexpressed in Heart (49.2), Milk (9.1), and Spinal cord (9.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for IFFO1 Gene



SOURCE GeneReport for Unigene cluster for IFFO1 Gene Hs.15243

mRNA Expression by UniProt/SwissProt for IFFO1 Gene

Q0D2I5-IFFO1_HUMAN
Tissue specificity: Ubiquitously expressed.
genes like me logo Genes that share expression patterns with IFFO1: view

Protein tissue co-expression partners for IFFO1 Gene

Primer Products

In Situ Assay Products

No data available for mRNA differential expression in normal tissues for IFFO1 Gene

Orthologs for IFFO1 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for IFFO1 Gene

Organism Taxonomy Gene Similarity Type Details
dog
(Canis familiaris)
Mammalia IFFO1 35
  • 92.96 (n)
  • 96.17 (a)
IFFO1 36
  • 96 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Iffo1 35
  • 89.32 (n)
  • 94.66 (a)
Iffo1 16
Iffo1 36
  • 95 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia IFFO1 35
  • 99.77 (n)
  • 99.65 (a)
IFFO1 36
  • 99 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Iffo1 35
  • 88.66 (n)
  • 94.42 (a)
cow
(Bos Taurus)
Mammalia IFFO1 36
  • 94 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia IFFO1 36
  • 85 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia IFFO1 36
  • 85 (a)
OneToOne
chicken
(Gallus gallus)
Aves IFFO1 36
  • 81 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia -- 36
  • 92 (a)
OneToMany
-- 36
  • 73 (a)
OneToMany
tropical clawed frog
(Silurana tropicalis)
Amphibia iffo1 35
  • 70.57 (n)
  • 74.19 (a)
Str.2744 35
African clawed frog
(Xenopus laevis)
Amphibia Xl.22282 35
zebrafish
(Danio rerio)
Actinopterygii LOC563794 35
  • 64.18 (n)
  • 68.23 (a)
sbcb164 35
iffo1a 36
  • 50 (a)
OneToMany
iffo1b 36
  • 50 (a)
OneToMany
Alicante grape
(Vitis vinifera)
eudicotyledons Vvi.2490 35
barley
(Hordeum vulgare)
Liliopsida Hv.5144 35
rice
(Oryza sativa)
Liliopsida Os.16852 35
corn
(Zea mays)
Liliopsida Zm.731 35
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.1551 35
Species with no ortholog for IFFO1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for IFFO1 Gene

ENSEMBL:
Gene Tree for IFFO1 (if available)
TreeFam:
Gene Tree for IFFO1 (if available)

Paralogs for IFFO1 Gene

Paralogs for IFFO1 Gene

(5) SIMAP similar genes for IFFO1 Gene using alignment to 4 proteins:

genes like me logo Genes that share paralogs with IFFO1: view

Variants for IFFO1 Gene

Sequence variations from dbSNP and Humsavar for IFFO1 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs740852 -- 6,541,160(-) TACAC(C/T)GCAAC intron-variant, downstream-variant-500B
rs758740 -- 6,539,938(+) GAGCA(C/T)GTGGA nc-transcript-variant, utr-variant-3-prime
rs1047792 -- 6,539,933(-) GTGCT(A/C)ACGCT nc-transcript-variant, utr-variant-3-prime
rs1063206 -- 6,539,614(-) GGTTC(A/C)CAATG nc-transcript-variant, utr-variant-3-prime
rs2240872 -- 6,539,103(+) CTCAG(G/T)TGCTT downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for IFFO1 Gene

Variant ID Type Subtype PubMed ID
dgv453e1 CNV Complex 17122850
nsv898634 CNV Loss 21882294

Variation tolerance for IFFO1 Gene

Residual Variation Intolerance Score: 28.3% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 2.38; 42.22% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for IFFO1 Gene

HapMap Linkage Disequilibrium report
IFFO1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for IFFO1 Gene

Disorders for IFFO1 Gene

Relevant External Links for IFFO1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
IFFO1

No disorders were found for IFFO1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for IFFO1 Gene

Publications for IFFO1 Gene

  1. Intermediate filament proteins. (PMID: 8771189) Quinlan R. … Lane B. (Protein Profile 1995) 2 3 67
  2. Molecular and cellular biology of intermediate filaments. (PMID: 3052284) Steinert P.M. … Roop D.R. (Annu. Rev. Biochem. 1988) 2 3
  3. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3
  4. Protein interaction network of alternatively spliced isoforms from brain links genetic risk factors for autism. (PMID: 24722188) Corominas R. … Iakoucheva L.M. (Nat. Commun. 2014) 3
  5. Protein interaction network of the mammalian Hippo pathway reveals mechanisms of kinase-phosphatase interactions. (PMID: 24255178) Couzens A.L. … Gingras A.C. (Sci Signal 2013) 3

Products for IFFO1 Gene

Sources for IFFO1 Gene

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