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IER5 Gene

protein-coding   GIFtS: 46
GCID: GC01P181057

Immediate Early Response 5

  See related diseases
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Immediate Early Response 51 2
SBBI482
Immediate Early Response Gene 5 Protein2

External Ids:    HGNC: 53931   Entrez Gene: 512782   Ensembl: ENSG000001627837   OMIM: 6071775   UniProtKB: Q5VY093   

Export aliases for IER5 gene to outside databases

Previous GC identifers: GC01P178581 GC01P176486 GC01P177578 GC01P178297 GC01P177789 GC01P179324 GC01P152288


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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Entrez Gene summary for IER5 Gene:
This gene encodes a protein that is similar to other immediate early response proteins. In the mouse, a similar
gene may play an important role in mediating the cellular response to mitogenic signals. Studies in rats found
the expression of a similar gene to be increased after waking and sleep deprivation. (provided by RefSeq, Jul
2008)

GeneCards Summary for IER5 Gene:
IER5 (immediate early response 5) is a protein-coding gene. Diseases associated with IER5 include t-cell leukemia, and acute myeloid leukemia. An important paralog of this gene is IER5L.




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence:
NC_000001.11  NC_018912.2  NT_004487.20  
Regulatory elements:
   Regulatory transcription factor binding sites in the IER5 gene promoter:
         STAT1   STAT1beta   POU3F2 (N-Oct-5a)   POU3F2 (N-Oct-5b)   POU3F2   NF-kappaB   STAT1alpha   GATA-1   STAT3   NF-kappaB1   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidIER5 promoter sequence
   Search Chromatin IP Primers for IER5

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat IER5


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 1q25.3   Ensembl cytogenetic band:  1q25.3   HGNC cytogenetic band: 1q25.3

IER5 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
IER5 gene location

GeneLoc information about chromosome 1         GeneLoc Exon Structure

GeneLoc location for GC01P181057:  view genomic region     (about GC identifiers)

Start:
181,057,638 bp from pter      End:
181,059,979 bp from pter
Size:
2,342 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
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UniProtKB/Swiss-Prot: IER5_HUMAN, Q5VY09 (See protein sequence)
Recommended Name: Immediate early response gene 5 protein  
Size: 327 amino acids; 33704 Da
Secondary accessions: B2RBV3 Q8WY68 Q9NY49 Q9NZP9

Explore the universe of human proteins at neXtProt for IER5: NX_Q5VY09

Explore proteomics data for IER5 at MOPED


See IER5 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

REFSEQ proteins: NP_057629.2  
ENSEMBL proteins: 
 ENSP00000356549  

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Cloud-Clone Corp. CLIAs for IER5


(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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1 InterPro protein domain:
 IPR008653 IER

Graphical View of Domain Structure for InterPro Entry Q5VY09

ProtoNet protein and cluster: Q5VY09

UniProtKB/Swiss-Prot: IER5_HUMAN, Q5VY09
Similarity: Belongs to the IER family


IER5 for domains           About GeneDecksing


(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Animal Models:
   inGenious Targeting Laboratory: Let us create your new Knockout/Knockin mouse model for IER5
   inGenious Targeting Laboratory: Contact us about creating complex and humanized mouse models for IER5

   genOway customized KO model: permanent, tissue-specific or time-controlled inactivation for IER5
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miRNA
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miRTarBase miRNAs that target IER5:
hsa-mir-26b-5p (MIRT029804), hsa-mir-33a-5p (MIRT028187), hsa-mir-744-5p (MIRT016089)

Block miRNA regulation of human, mouse, rat IER5 using miScript Target Protectors
Selected qRT-PCR Assays for microRNAs that regulate IER5 (see all 43):
hsa-miR-100* hsa-miR-3152-3p hsa-miR-3607-3p hsa-miR-429 hsa-miR-300 hsa-miR-513a-5p hsa-miR-605 hsa-miR-30d
SwitchGear 3'UTR luciferase reporter plasmidIER5 3' UTR sequence
Inhib. RNA
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Predesigned siRNA for gene silencing in human, mouse, rat IER5

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GenScript: all cDNA clones in your preferred vector: IER5 (NM_016545)
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Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat IER5

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Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for IER5


(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Subcellular locations from COMPARTMENTS: 

CompartmentConfidence
cytosol2
nucleus2
extracellular1

(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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    Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for IER5
Interactions:

    Search GeneGlobe Interaction Network for IER5

STRING Interaction Network Preview (showing 1 interactants - click image to see more details)

1 Interacting protein for IER5 (Q5VY093 ENSP000003565494) via UniProtKB, MINT, STRING, and/or I2D
InteractantInteraction Details
GeneCardExternal ID(s)
PPP2R2BQ000053, ENSP000003365914I2D: score=2 STRING: ENSP00000336591
About this table

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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Browse Small Molecules at EMD Millipore
   Browse drugs & compounds from Enzo Life Sciences
  Browse compounds at ApexBio 

Browse Tocris compounds for IER5



(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, and/or QIAGEN )
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REFSEQ mRNAs for IER5 gene: 
NM_016545.4  

Unigene Cluster for IER5:

Immediate early response 5
Hs.15725  [show with all ESTs]
Unigene Representative Sequence: NM_016545
1 Ensembl transcript including schematic representation, and UCSC links where relevant:
ENST00000367577(uc001got.4)
miRNA
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Selected qRT-PCR Assays for microRNAs that regulate IER5 (see all 43):
hsa-miR-100* hsa-miR-3152-3p hsa-miR-3607-3p hsa-miR-429 hsa-miR-300 hsa-miR-513a-5p hsa-miR-605 hsa-miR-30d
SwitchGear 3'UTR luciferase reporter plasmidIER5 3' UTR sequence
Inhib. RNA
Products:
     
OriGene RNAi products in human, mouse, rat for IER5
Predesigned siRNA for gene silencing in human, mouse, rat IER5
Clone
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OriGene clones in human, mouse for IER5 (see all 6)
OriGene ORF clones in mouse, rat for IER5
OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
GenScript: all cDNA clones in your preferred vector: IER5 (NM_016545)
DNA2.0 Custom Codon Optimized Gene Synthesis Service for IER5
Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat IER5
Primer
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OriGene qPCR primer pairs and template standards for IER5
OriGene qSTAR qPCR primer pairs in human, mouse for IER5
Pre-validated RT2 qPCR Primer Assay in human, mouse, rat IER5
  QuantiTect SYBR Green Assays in human, mouse, rat IER5
  QuantiFast Probe-based Assays in human, mouse, rat IER5

Additional mRNA sequence: 

AF178984.1 AF258581.1 AJ251089.1 AK300732.1 AK314830.1 BC000128.2 BC108253.1 

5 DOTS entries:

DT.415264  DT.100819509  DT.121348712  DT.100700272  DT.95372668 

Selected AceView cDNA sequences (see all 198):

AI097594 CR591624 AW006746 W01100 BF063820 AF178984 AI572505 CR611489 
BQ000476 BE018207 AA235294 AW117622 CA430704 CR618453 BF447270 BC000128 
AA436461 AW138404 AA599690 BF001424 AW087616 BQ222173 NM_016545 BU678407 

GeneLoc Exon Structure


(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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IER5 expression in normal human tissues (normalized intensities)      IER5 embryonic expression: see
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: AACCCCTGGA
IER5 Expression
About this image


IER5 expression in embryonic tissues and stem cells    About this table
Data from LifeMap, the Embryonic Development and Stem Cells Database
 selected tissues (see all 5) fully expand
 
 Brain (Nervous System)    fully expand to see all 16 entries
         Thalamus
         Substantia Nigra   
 
 Heart (Cardiovascular System)
         Cardiac Crescent Cells Cardiac Crescent
 
 Neurons
         nGnG Amacrine Cells Inner Nuclear Layer
 
 Bone (Muscoskeletal System)
         Bone Marrow
 
 Eye (Sensory Organs)
         nGnG Amacrine Cells Inner Nuclear Layer
IER5 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

IER5 Protein Expression

SOURCE GeneReport for Unigene cluster: Hs.15725
    Custom PCR Arrays for IER5
Primer
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OriGene qPCR primer pairs and template standards for IER5
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QuantiFast Probe-based Assays in human, mouse, rat IER5
In Situ
Assay Products:
 

 
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for IER5

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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This gene was present in the common ancestor of chordates.

Orthologs for IER5 gene from Selected species (see all 11)    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
mouse
(Mus musculus)
Mammalia Ier51 , 5 immediate early response 51, 5 81.47(n)1
77.3(a)1
  1 (66.45 cM)5
159391  NM_010500.21  NP_034630.11 
 1550963675 
chicken
(Gallus gallus)
Aves IER51 immediate early response 5 64.14(n)
59.6(a)
  101750986  XM_004943299.1  XP_004943356.1 
African clawed frog
(Xenopus laevis)
Amphibia BU901308.12   -- 80.31(n)    BU901308.1 
zebrafish
(Danio rerio)
Actinopterygii wufb04b032 Transcribed sequence with moderate similarity to protein more 79.74(n)    57036369 


ENSEMBL Gene Tree for IER5 (if available)
TreeFam Gene Tree for IER5 (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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Paralogs for IER5 gene
IER5L2  

IER5 for paralogs           About GeneDecksing



(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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Selected SNPs for IER5 (see all 118)    About this table    
Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 1 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs1899270731,2
--181055678(+) GAGAAC/TTAGCC 1 -- us2k10--------
rs1824251231,2
--181056047(+) TGATCC/TGCCCA 1 -- us2k10--------
rs1401260421,2
C--181056048(+) GATCCA/GCCCAC 1 -- us2k10--------
rs1867179441,2
--181056103(+) CCCGGC/TTGATT 1 -- us2k10--------
rs66625071,2
C,F,A,H--181056160(+) CCAGAG/AGCCAT 1 -- us2k123Minor allele frequency- A:0.33NS EA NA WA CSA 2352
rs2020507281,2
--181056508(+) TGGTA-/TTTTTT 1 -- us2k10--------
rs120581721,2
C,F,H--181056609(+) ATTCAG/AATTGT 1 -- us2k18Minor allele frequency- A:0.00NS EA NA 696
rs1421953991,2
--181056637(+) TTATCA/GTCTGT 1 -- us2k10--------
rs1459556981,2
--181056781(+) ATGTTC/TCCAGT 1 -- us2k10--------
rs3728587981,2
C--181057030(+) AATGG-/AAAAAA 1 -- us2k10--------

HapMap Linkage Disequilibrium report for IER5 (181057638 - 181059979 bp)

Structural Variations
     Database of Genomic Variants (DGV) 1 variation for IER5:    About this table    
Variant IDTypeSubtypePubMed ID
esv22385CNV Loss19812545

Site Specific Mutation Identification with PCR Assays
SeqTarget long-range PCR primers for resequencing IER5
DNA2.0 Custom Variant and Variant Library Synthesis for IER5

(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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OMIM gene information: 607177    OMIM disorders: --

5 diseases for IER5:    About MalaCards
t-cell leukemia    acute myeloid leukemia    myeloid leukemia    leukemia
cerebritis

1 disease from the University of Copenhagen DISEASES database for IER5:
Stem cell leukemia

IER5 for disorders           About GeneDecksing

Genetic Association Database (GAD): IER5

Export disorders for IER5 gene to outside databases

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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PubMed articles for IER5 gene, integrated from 10 sources (see all 15):
(articles sorted by number of sources associating them with IER5)
    Utopia: connect your pdf to the dynamic
world of online information

  1. The DNA sequence and biological annotation of human chromosome 1. (PubMed id 16710414)1, 2 Gregory S.G.... Bentley D.R. (Nature 2006)
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S.... Malek J. (Genome Res. 2004)
  3. Large-scale cDNA transfection screening for genes related to cancer development and progression. (PubMed id 15498874)1, 2 Wan D....Gu J. (Proc. Natl. Acad. Sci. U.S.A. 2004)
  4. Gene expression in the brain across the sleep-waking cycle. (PubMed id 11102586)1, 3 Cirelli C. and Tononi G. (Brain Res. 2000)
  5. Ier5, a novel member of the slow-kinetics immediate-early genes. (PubMed id 10049588)1, 3 Williams M....Hunter K. (Genomics 1999)
  6. Solubility-based genetic screen identifies RING finger protein 126 as an E3 ligase for activation-induced cytidine deaminase. (PubMed id 23277564)1 Delker R.K....Papavasiliou F.N. (Proc. Natl. Acad. Sci. U.S.A. 2013)
  7. The proteomic analysis of endogenous FAT10 substrates identifies p62/SQSTM1 as a substrate of FAT10ylation. (PubMed id 22797925)1 Aichem A....Groettrup M. (J. Cell. Sci. 2012)
  8. Transcriptional repression of Cdc25B by IER5 inhibits the proliferation of leukemic progenitor cells through NF-YB and p300 in acute myeloid leukemia. (PubMed id 22132193)1 Nakamura S....Yamashita M. (PLoS ONE 2011)
  9. Induced expression of the IER5 gene by gamma-ray irradiation and its involvement in cell cycle checkpoint control and survival. (PubMed id 19238419)1 Ding K.K....Zhou P.K. (Radiat Environ Biophys 2009)
  10. An integrated workflow for charting the human interaction proteome: insights into the PP2A system. (PubMed id 19156129)1 Glatter T....Gstaiger M. (Mol. Syst. Biol. 2009)

(in PubMed, OMIM, and NCBI Bookshelf)
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 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 51278 HGNC: 5393 AceView: IER5 Ensembl:ENSG00000162783 euGenes: HUgn51278
ECgene: IER5 H-InvDB: IER5

(According to HUGE)
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  --

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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NameDescription
PharmGKB entry for IER5 Pharmacogenomics, SNPs, Pathways

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
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Patent Information for IER5 gene:
Search GeneIP for patents involving IER5

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, and ESI BIO, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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GeneCards Homepage - Last full update: 7 May 2014 - Incrementals: 9 May 2014 , 2 Jun 2014 , 26 Jun 2014 , 30 Jun 2014

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