V3 here soon-try beta now
Gene Search (GeneCards Home) | GeneCards Guide | User Feedback | Terms of Use | Notice about third-party sites
 

IER3 Gene

protein-coding   GIFtS: 54

GC06M030818
immediate early response 3
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
Services    
(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
About This Section

Aliases
DIF-2 1, 2
DIF2 2, 3, 5
GLY96 2, 5
IEX-1 1, 2
IEX-1L 1, 2
IEX1 2, 3, 5
OTTHUMP00000029400 2
PRG1 1, 2, 3, 5
Descriptions
Differentiation-dependent gene 2 protein 3
Immediate early protein GLY96 3
Immediate early response 3 protein 3
PACAP-responsive gene 1 2
PACAP-responsive gene 1 protein 3
Protein DIF-2 3
Protein PRG1 3
anti-death protein 2
differentiation-dependent gene 2 2
expressed in pancreatic carcinoma 2
gly96, mouse, homolog of 2
immediate early response 3 2
immediately early gene X-1 2
radiation-inducible immediate-early gene IEX-1 2
External Ids
HGNC: 53921
Entrez Gene: 88702
UniProtKB: P466953
Ensembl: ENSG000001373317
Search outside databases for aliases for IER3 gene

Previous GC identifers: GC06M030766 GC06M030481 GC06M030817

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

EntrezGene summary for IER3:
This gene functions in the protection of cells from Fas- or tumor necrosis factor type
alpha-induced apoptosis. Partially degraded and unspliced transcripts are found after virus
infection in vitro, but these transcripts are not found in vivo and do not generate a valid
protein. [provided by RefSeq]

Gene Wiki entry for IER3
(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
About This Section

Genomic View:
UCSC Golden Path with GeneCards custom track

 Transcription factor binding sites upstream to the IER3 gene  

Entrez Gene cytogenetic band: 6p21.3   Ensembl cytogenetic band:  6p21.33   HGNC cytogenetic band: 6p21.3

IER3 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 6         GeneLoc Exon Structure

GeneLoc location for GC06M030818:     (about GC identifiers)

Start:
30,818,955 bp from pter
End:
30,820,306 bp from pter
Size:
1,352 bases
Orientation:
minus strand

2 alternative locations:
Chr6-,c6_QBL 30,843,361-30,844,716      Chr6-,c6_COX 30,848,095-30,849,450     
RefSeq DNA sequence:
NC_000006.10  NT_007592.14  NT_113891.1  NT_113893.1  
(According to 1UniProtKB, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
About This Section

UniProtKB/Swiss-Prot: IEX1_HUMAN, P46695 (See protein sequence)
Recommended Name: Radiation-inducible immediate-early gene IEX-1  
Size: 156 amino acids; 16929 Da
Subcellular location: Membrane; Single-pass type II membrane protein (Potential)
Secondary accessions: Q92691 Q93044

Post-translational modifications:

  • Glycosylated1
  • View phosphorylation sites using PhosphoSite2


  • REFSEQ proteins: NP_003888.2  

    ENSEMBL proteins: 
    ENSP00000365557 ENSP00000365562 ENSP00000259874 


    Human Recombinant Proteins 
    Browse Drug Discovery Central at Invitrogen for human recombinant proteins
    Browse Purified and Recombinant Proteins at Millipore
    Browse Human Recombinant Proteins at Sigma-Aldrich  
    Browse R&D Systems for human recombinant proteins
    Browse recombinant and purified proteins available from Enzo Life Sciences
    Recombinant Proteins from Abcam (IEX1)
    Human Recombinant Proteins from Abnova (IER3)
                    Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 

    2 Gene Ontology (GO) cellular component terms (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0016020 membrane IEA--
    GO:0016021 integral to membrane IEA--
    About this table

    Antibodies for IER3: 
    Browse Antibodies Central at Invitrogen
    Browse Millipore's Extensive Line of Mono- and Polyclonal Antibodies
    Sigma-Aldrich Antibodies for IER3
    Browse R&D Systems for Antibodies
    Antibodies from Abcam (IEX1), each with their AbpromiseSM
    Browse Abnova for Monoclonal and Polyclonal Antibodies
    Search Novus for antibodies for IER3

    Assays for IER3: 
    Browse Invitrogen for biochemical assays
    Browse Kits and Assays available from Millipore
    Browse R&D Systems for biochemical assays
    Browse biochemical assays available from Enzo Life Sciences

    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    ProtoNet protein and cluster: P46695

    UniProtKB/Swiss-Prot: IEX1_HUMAN, P46695
    Similarity: Belongs to the IER3 family

    (According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
    shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
    RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
    About This Section

    Inhib.
    RNA:
    Invitrogen RNAi Products for gene knock-down (IER3)
    Browse for Gene Knock-down Tools from Millipore
    Browse Abnova for Chimera RNAi Products
                   OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2): NM_052815

                  Applied Biosystems Silencer® siRNAs for IER3

                  Sigma-Aldrich siRNA for IER3  
                         Sigma-Aldrich shRNA for IER3  
                         Explore Sigma-Aldrich super-pooled esiRNAs  

    Clones:Invitrogen Clones for IER3
    Browse Clones for the Expression of Recombinant Proteins Available from Millipore
                  OriGene GFP tagged cDNA clone in CMV expression vector: NM_003897
                                     Myc/DDK tagged cDNA clone in CMV expression vector: NM_003897
                                     untagged cDNA clones in CMV expression vector (see all 2): NM_003897 

    Primers: Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers
                  OriGene genome-wide validated SYBR primer pairs: NM_003897

    UniProtKB/Swiss-Prot: IEX1_HUMAN, P46695
    Induction: By radiation, TPA, okadaic acid and TNF-alpha

    Genatlas biochemistry entry for IER3:
    immediate early gene induced by ionizing radiation and activators of PRKC,including a shorter
    (IEX-S) and a larger non spliced isoform (IEX-L) the later inhibiting apoptosis involved in NFKB
    mediate survival cell

    2 MGI mutant phenotypes (inferred from 1 allele(MGI details for Ier3):

    muscle

    1 Gene Ontology (GO) molecular function term (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005515 protein binding IPI15451437
    About this table

    (Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
    Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
    About This Section


     Gene Network CentralTM Interacting Genes and Proteins Network for  IER3 


    5/11 Interacting proteins for IER3 (ENSP000003655623 P466951, 2) via UniProtKB, MINT, and/or STRING (see all 11 )
    InteractantInteraction Details
    GeneCardExternal ID(s)
    MAPK1P284822STRING (score=.903) MINT-2835582
    CAMLGP490691EBI-1748945, EBI-1748958
    PPP2R5BQ151732MINT-2835538 MINT-2835492 MINT-2835515 MINT-2835371
    PPP2CAP677752MINT-2835686 MINT-2835661
    PPP2R5CQ133622MINT-2835469 MINT-2835420
    About this table

    3 Gene Ontology (GO) biological process terms (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006915 apoptosis TAS9196025
    GO:0006916 anti-apoptosis TAS9703517
    GO:0009653 anatomical structure morphogenesis TAS9196025
    About this table
    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
    About This Section

    Browse drugs & compounds from Enzo Life Sciences
    Browse Small Molecules at Sigma-Aldrich

    Browse Tocris compounds for IER3

    (GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView,
    non coding RNAs according to RNAdb,
    ESTs according to GeneTide,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from Invitrogen, Millipore, and/or Abnova,
    siRNAs from Applied Biosystems, Sigma-Aldrich,
    shRNA from Sigma-Aldrich, OriGene,
    Tagged/untagged cDNA clones from OriGene,
    Expression Assays from Applied Biosystems)
    About This Section

    Inhib.
    RNA:
    Invitrogen RNAi Products for gene knock-down (IER3)
    Browse for Gene Knock-down Tools from Millipore
    Browse Abnova for Chimera RNAi Products
                   OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2): NM_052815

                  Sigma-Aldrich siRNA for IER3  
                         Sigma-Aldrich shRNA for IER3  
                         Explore Sigma-Aldrich super-pooled esiRNAs  

    Applied Biosystems Silencer® siRNAs: 

    NM_003897  

    REFSEQ mRNAs for IER3 gene: 

    NM_003897.3   

    Applied Biosystems TaqMan ® Gene Expression Assays: 

    NM_003897  

                  OriGene GFP tagged cDNA clone in CMV expression vector: NM_003897
                                     Myc/DDK tagged cDNA clone in CMV expression vector: NM_003897
                                     untagged cDNA clones in CMV expression vector (see all 2): NM_003897 

    Additional cDNA sequence: 

    AF039067.1 AF083421.1 AK222588.1 AK314162.1 BC000844.2 BC005080.1 BT006703.1 CR594838.1 
    CR594999.1 CR599121.1 CR599601.1 CR605389.1 CR613281.1 CR625889.1 S81914.1 Y14551.1 

    19 DOTS entries:

    DT.418090  DT.100839835  DT.100839846  DT.92326984  DT.40116205  DT.100834870  DT.102824035  DT.100839845 
    DT.121370704  DT.100838072  DT.97791426  DT.97855230  DT.99986295  DT.100839839  DT.100839842  DT.121370890 
    DT.91638085  DT.121370878  DT.92443683 

    21 AceView cDNA sequences:

    CR594838 BC005080 CR613281 CR599121 CR599601 CR625889 CR605389 BC000844 
    CR594999 AF083421 AF039067 Y14551 BV177387 NM_052815 NM_003897 BT006703 
    S81914 CD617661 AJ227914 BG946513 BG946500 

    highest scoring ESTs for IER3:

    S81914 AA043424 AA143404 AA356940 AA410666 AA480815 AF039067 AF083421 AI824906 BC000844 

    Unigene Cluster for IER3:

    Immediate early response 3
    Hs.591785  [show with all ESTs]
    Unigene Representative Sequence: BM906591


    GeneLoc Exon Structure

    3 Ensembl transcripts including schematic representations:
    ENST00000376377  ENST00000376382  ENST00000259874  
    (Experimental results according to 1GeneNote and GNF BioGPS,
    probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
    Expression Assays from Applied Biosystems )
    About This Section

    IER3 expression in normal and diseased human tissues

     Applied Biosystems TaqMan ® Gene Expression Assays for IER3

    1 / 2 / 3

    3 probe-sets matching IER3 gene


    Affymetrix
    probe-set
    Array  GeneAnnot data GeneNote data GeneTide data
    # genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank
    1237_at2, 3 U95-A 1 1.00 1.00 1.00 1.00 S81914 1.00 1.00 1.00 1

    201631_s_at2, 3 U133-A 1 1.00 1.00 -- -- NM_003897 0.60 1.00 0.82 1

    201631_s_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --
    GeneDecks  IER3 for binary patterns associated with the probe-sets selected above  
    About GeneDecksing
    About this table    
    Data from (Publications) and GNF BioGPS
        About these images
    About these images

    CGAP SAGE TAG: ACCATCCTGC

    SOURCE GeneReport for Unigene cluster: Hs.591785

    Expression variation in blood from EXPOLDB for IER3

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
    About This Section


    Orthologs for IER3 gene from 5 species
    Organism Gene Locus Description Human
    Similarity
    NCBI accessions
    dog
    (Canis familiaris)
    IER31   -- immediate early response 3 83.97(n)
    78.21(a)
    481708  XM_538829.2  XP_538829.1 
    chimpanzee
    (Pan troglodytes)
    IER31   -- immediate early response 3 99.57(n)
    98.72(a)
    743437  XM_001149799.1  XP_001149799.1 
    cow
    (Bos taurus)
    IER31   -- immediate early response 3 85.9(n)
    80.77(a)
    505455  NM_001075202.1  NP_001068670.1 
    rat
    (Rattus norvegicus)
    Ier31   -- immediate early response 3 79.06(n)
    76.28(a)
    294235  NM_212505.1  NP_997670.1 
    mouse
    (Mus musculus)
    Ier31, 5 175
    immediate early response 31, 5 78.35(n)1
    75.32(a)1
    159371  NM_133662.21  NP_598423.11 
     AI6639935  AK0034665  (see all 13)
    About this table        Species with no ortholog for IER3

    ENSEMBL Gene Tree for IER3
    (Paralogs according to 1HomoloGene
    and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
    About This Section

      --
    (According to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
    About This Section


    10/12 NCBI SNPs in IER3 are shown (see all 12 )
    (Click for Applied Biosystems TaqMan ® Genotyping Assay)  (see all 30)
    ABGenomic DataTranscription DataAllele Frequencies
    SNP IDValidChr 6 posSequenceRecsAA
    Chg
    TypeMoreRecsAllele
    freq
    PopTotal
    sample
    More
    ------------
    --
    rs22841741,2
    A,C,F,H30821559(+) agaatT/Ctaaaa 1 -- ng3110Minor allele frequency- C:0.13EA EU WA NS 2502
    --
    rs22841731,2
    A,C,F30821275(+) gatgcG/Agctgg 1 -- ng311Minor allele frequency- A:0.19EA 1490
    --
    rs31306621,2
    A,C30821787(+) gaatgA/Caatcc 1 -- ng310--------
    --
    rs69312961,2
    A,C30821310(+) ctcagC/Gaacag 1 -- ng310--------
    --
    rs586387681,2
    --30821409(+) GACCAC/GTAGAA 1 -- ng310--------
    --
    rs721644221,2
    --30822305(+) GGCTA-/ATA   
       TATAT
    ATATA
    1 -- ng310--------
    --
    rs94688221,2
    --30820445(+) GGAGAC/TTTGAC 1 -- ng310--------
    --
    rs37573381,2
    --30820747(+) gcacgC/Tgccac 1 -- ng310--------
    --
    rs94688231,2
    --30822152(+) ttttgA/Cgacag 1 -- ng310--------
    --
    rs349377981,2
    --30821796(+) CCTGG-/AAAAAA 1 -- ng310--------
    About this table

    HapMap Linkage Disequilibrium images for IER3 (up to first 250kb)

    (in which this Gene is Involved, According to OMIM, UniProtKB, Novoseek, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
    About This Section

    OMIM: 602996

    6 Novoseek disease relationships for IER3 gene

    Disease   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
    tumors 14.45 21 11844788 (2), 17704804 (2), 18026799 (2), 8603392 (2) (see all 10)
    necrosis 10.52 8 8603392 (2), 9791001 (1), 16528364 (1), 17538120 (1) (see all 6)
    hyperplasia 0.00 1 15451437 (1)
    cancer 0.00 3 15087407 (2)
    breast cancer 0.00 2 15102447 (1), 15120418 (1)
    prostate cancer 0.00 1 14656475 (1)
    About this table

    (Possibly Related Articles in Doctor's Guide)
    About This Section

      --

    (in PubMed. Associations of this gene to articles via 1Novoseek, 2HGNC, 3Entrez Gene, 4UniProtKB/Swiss-Prot, 5UniProtKB/TrEMBL, 6GAD, and/or 7PharmGKB)
    About This Section

    10/82 PubMed articles for IER3 gene (see all 82 ):
    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section

     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)
    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
    About This Section

    Entrez Gene: 8870 HGNC: 5392 AceView: IER3 Ensembl:ENSG00000137331 euGenes: HUgn8870
    ECgene: IER3 H-InvDB: IER3
    (According to HUGE)
    About This Section

      --
    (According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section

    NameDescription
    ATLAS Chromosomes in Cancer entry for IER3 Genetics and Cytogenetics in Oncology and Haematology
    (Available from WIS Yeda, Salk, Tufts)
    About This Section

      --
    (Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
    Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
    Enzo Life Sciences, and/or Tocris Bioscience)
    About This Section



    Products for IER3:
     TaqMan ® Gene Expression Assays
     TaqMan ® Genotyping Assays
      Free SNP selection tool



      Invitrogen iPath Pathways  Invitrogen BLOCK-iT™ RNAi
      Invitrogen Antibodies  Invitrogen Assays
      Invitrogen Clones  Invitrogen Q-PCR Products
      Invitrogen Human Recombinant Kinases  Invitrogen Custom Antibody and Peptide Service
      Invitrogen Proteins / Assays / Screening Services  Search Invitrogen catalog for IER3-related products

     Millipore Custom Antibody & Bulk Services
     Millipore Preclinical / Clinical Development Services
     Millipore Immunoassay Services
     Millipore Target Screening & Profiling Services


     Predesigned and custom siRNAs for IER3 Antibodies for IER3
     Explore super-pooled esiRNAs Browse proteins at Sigma-Aldrich
     Lentivirus-delivered shRNAs for IER3 Browse small molecules at Sigma-Aldrich
     "Your Favorite Gene" Pathwaysfeedback


      
     Antibodies   Primer Pairs  
     Cell Culture Products   ELISAs  
     Flow Cytometry Kits   Protease Activity Assays & Reagents  
     Cell Selection/Detection Kits & Reagents   ELISA/Assay Development Kits & Reagents  
     Multiplex/Array Assay Kits & Reagents   ELISpot Kits & Development Modules  
     Recombinant & Natural Proteins  

     Recombinant Proteins (IER3)
     Search for Antibodies
     Search for Chimera RNAi
     Custom Service for Mouse Mab
     Custom Service for Rabbit Pab from Full-length Protein
      
     Search for Antibodies & Assays

     Recombinant Proteins
    (IEX1)
     Antibodies (IEX1)
     Search OriGene for IER3
     Search Tocris compounds for IER3




     Search www.enzolifesicences.com for proteins, assays, substrates, inhibitors & antibodies
     Search Novus for antibodies for IER3

    GeneCards Homepage    -    Last full update: 2 Jul 2009        Incremental update: 13 Oct 2009

    Random Gene From GIFtS : about GIFtS

    Gene Index:   3   5   A   B   C   D   E   F   G   H   I   J   K   L   M   N   O   P   Q   R   S   T   U   V   W   X   Y   Z

    Developed at the Crown Human Genome Center & Weizmann Institute of Science



    The GeneCards Human Gene Database: Copyright © 1996-2009, Weizmann Institute of Science. All Rights Reserved.
    IER3 Gene at Home site.
    Version 2.41.1
    server4.xennexinc.com