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Aliases & Descriptions for IER3
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| DIF-2 1, 2 | | DIF2 2, 3, 5 | | GLY96 2, 5 | | IEX-1 1, 2 | | IEX-1L 1, 2 | | IEX1 2, 3, 5 | | OTTHUMP00000029400 2 | | PRG1 1, 2, 3, 5 |
| | | Descriptions |
|---|
| Differentiation-dependent gene 2 protein 3 | | Immediate early protein GLY96 3 | | Immediate early response 3 protein 3 | | PACAP-responsive gene 1 2 | | PACAP-responsive gene 1 protein 3 | | Protein DIF-2 3 | | Protein PRG1 3 | | anti-death protein 2 | | differentiation-dependent gene 2 2 | | expressed in pancreatic carcinoma 2 | | gly96, mouse, homolog of 2 | | immediate early response 3 2 | | immediately early gene X-1 2 | | radiation-inducible immediate-early gene IEX-1 2 |
|
| | Search outside databases for aliases for IER3 genePrevious GC identifers: GC06M030766 GC06M030481 GC06M030817 |
Summaries for IER3(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for IER3: This gene functions in the protection of cells from Fas- or tumor necrosis factor type alpha-induced apoptosis. Partially degraded and unspliced transcripts are found after virus infection in vitro, but these transcripts are not found in vivo and do not generate a valid protein. [provided by RefSeq] Gene Wiki entry for IER3 |
Genomic Location for IER3
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the IER3 gene 
Entrez Gene cytogenetic band: 6p21.3 Ensembl cytogenetic band: 6p21.33 HGNC cytogenetic band: 6p21.3IER3 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 6 GeneLoc Exon Structure GeneLoc location for GC06M030818:
(about GC identifiers)
Start:
|
30,818,955 bp from pter |
End:
|
30,820,306 bp from pter |
Size:
|
1,352 bases |
Orientation:
|
minus strand |
2 alternative locations:
| Chr6-,c6_QBL 30,843,361-30,844,716 | Chr6-,c6_COX 30,848,095-30,849,450 |
RefSeq DNA sequence:- NC_000006.10 NT_007592.14 NT_113891.1 NT_113893.1
| Proteins for IER3
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: IEX1_HUMAN, P46695 (See
protein sequence)Recommended Name: Radiation-inducible immediate-early gene IEX-1 Size: 156 amino acids; 16929 Da
Subcellular location: Membrane; Single-pass type II membrane protein (Potential)
Secondary accessions: Q92691 Q93044Post-translational modifications:
Glycosylated1
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_003888.2
ENSEMBL proteins: ENSP00000365557 ENSP00000365562 ENSP00000259874
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
2 Gene Ontology (GO) cellular component terms (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0016020 | membrane |
IEA | -- | | GO:0016021 | integral to membrane |
IEA | -- | About this table
Antibodies for IER3: Assays for IER3: | Protein
Domains/ Families for IER3(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| ProtoNet protein and cluster: P46695 UniProtKB/Swiss-Prot: IEX1_HUMAN, P46695Similarity: Belongs to the IER3 family | Gene Function for IER3
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|                OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2): NM_052815
Applied Biosystems Silencer® siRNAs for IER3
Sigma-Aldrich siRNA for IER3  Sigma-Aldrich shRNA for IER3  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_003897                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_003897                                  untagged cDNA clones in CMV expression vector (see all 2): NM_003897 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_003897
UniProtKB/Swiss-Prot: IEX1_HUMAN, P46695Induction: By radiation, TPA, okadaic acid and TNF-alphaGenatlas biochemistry entry for IER3:immediate early gene induced by ionizing radiation and activators of PRKC,including a shorter (IEX-S) and a larger non spliced isoform (IEX-L) the later inhibiting apoptosis involved in NFKB mediate survival cell2 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Ier3):
1 Gene Ontology (GO) molecular function term (links to tree view): About this table | Pathways & Interactions for IER3
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
Gene Network CentralTM Interacting Genes and Proteins Network for IER3 
5/11 Interacting proteins for IER3 (ENSP000003655623 P466951, 2) via UniProtKB, MINT, and/or STRING (see all 11
)About this table
3 Gene Ontology (GO) biological process terms (links to tree view): About this table
|
Drugs & Compounds for IER3(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for IER3
|
Transcripts for IER3(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|                OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2): NM_052815
Sigma-Aldrich siRNA for IER3  Sigma-Aldrich shRNA for IER3  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_003897 REFSEQ mRNAs for IER3 gene: NM_003897.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_003897               OriGene GFP tagged cDNA clone in CMV expression vector: NM_003897                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_003897                                  untagged cDNA clones in CMV expression vector (see all 2): NM_003897  Additional cDNA sequence: AF039067.1 AF083421.1 AK222588.1 AK314162.1 BC000844.2 BC005080.1 BT006703.1 CR594838.1 CR594999.1 CR599121.1 CR599601.1 CR605389.1 CR613281.1 CR625889.1 S81914.1 Y14551.1 19 DOTS entries: DT.418090 DT.100839835 DT.100839846 DT.92326984 DT.40116205 DT.100834870 DT.102824035 DT.100839845 DT.121370704 DT.100838072 DT.97791426 DT.97855230 DT.99986295 DT.100839839 DT.100839842 DT.121370890 DT.91638085 DT.121370878 DT.92443683 21 AceView cDNA sequences:CR594838 BC005080 CR613281 CR599121 CR599601 CR625889 CR605389 BC000844 CR594999 AF083421 AF039067 Y14551 BV177387 NM_052815 NM_003897 BT006703 S81914 CD617661 AJ227914 BG946513 BG946500
highest scoring ESTs for IER3:S81914 AA043424 AA143404 AA356940 AA410666 AA480815 AF039067 AF083421 AI824906 BC000844 Unigene Cluster for IER3: Immediate early response 3 Hs.591785 [show with all ESTs]Unigene Representative Sequence: BM906591
GeneLoc Exon Structure
3 Ensembl transcripts including schematic representations: ENST00000376377
ENST00000376382
ENST00000259874
|
Expression for IER3
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| IER3 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for IER3
1 / 2 / 3 3 probe-sets matching IER3 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: ACCATCCTGC
SOURCE GeneReport for Unigene cluster: Hs.591785
Expression variation in blood from EXPOLDB for IER3 |
Orthologs for IER3
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for IER3 gene from 5 species
About this table Species with no ortholog for IER3
ENSEMBL Gene Tree for IER3 | Paralogs for IER3(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| -- |
SNPs/Variants for IER3(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for IER3 (up to first 250kb)
|
Disorders & Mutations for IER3
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 602996
6 Novoseek disease relationships for IER3 gene
About this table
|
Medical News for IER3(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for IER3 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/82 PubMed articles for IER3 gene (see all 82
):- Identification and characterization of a radiation-inducible glycosylated human early-response gene. (PubMed id 8603392)1, 2, 3, 4 Kondratyev A.D.... Jung M.O. (1996)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- IEX-1L, an apoptosis inhibitor involved in NF-kappaB-mediated cell survival. (PubMed id 9703517)2, 3 Wu M.X....Schlossman S.F. (1998)
- Identification and characterization of a novel monocyte/macrophage differentiation-dependent gene that is responsive to lipopolysaccharide, ceramide, and lysophosphatidylcholine. (PubMed id 9196025)3, 4 Pietzsch A.... Schmitz G. (1997)
- PRG1: a novel early-response gene transcriptionally induced by pituitary adenylate cyclase activating polypeptide in a pancreatic carcinoma cell line. (PubMed id 8653710)3, 4 Schaefer H.... Schmidt W.E. (1996)
- Prognostic significance of the immediate early response gene X-1 (IEX-1) expression in pancreatic cancer. (PubMed id 18026799)1, 3 Sasada T....Takabayashi A. (2008)
- IEX-1: a new ERK substrate involved in both ERK survival activity and ERK activation. (PubMed id 12356731)1, 3 Garcia J....Porteu F. (2002)
- Immediate early gene X1 (IEX-1) is organized in subnuclear structures and partially co-localizes with promyelocytic leukemia protein in HeLa cells. (PubMed id 15855159)1, 3 Kruse M.L....Schafer H. (2005)
- Regulation of a novel immediate early response gene, IEX-1, in keratinocytes by 1alpha,25-dihydroxyvitamin D3. (PubMed id 9791001)1, 3 Kobayashi T....Kumar R. (1998)
- The apoptosis-inducing effect of gastrin on colorectal cancer cells relates to an increased IEX-1 expression mediating NF-kappa B inhibition. (PubMed id 17704804)1, 3 Sebens Muerkoster S....Arlt A. (2008)
|
Search for IER3
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing IER3
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing IER3
(According to HUGE)
About This Section
| -- |
Specialized Databases showing IER3(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for IER3(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for IER3:

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| | Recombinant Proteins (IEX1) | | Antibodies (IEX1) |
| | | Search Tocris compounds for IER3 |
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Incremental update: 13 Oct 2009
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