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Aliases for IDI2-AS1 Gene

Subcategory (RNA class) for IDI2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for IDI2-AS1 Gene

  • IDI2 Antisense RNA 1 2 3 4 5
  • IDI2 Antisense RNA 1 (Non-Protein Coding) 2 3
  • IDI2 Antisense RNA (Non-Protein Coding) 2 3
  • C10orf110 3 4
  • Chromosome 10 Open Reading Frame 110 2
  • IDI2 Antisense Gene Protein 1 4
  • IDI2-AS 3
  • HT009 3

External Ids for IDI2-AS1 Gene

Previous HGNC Symbols for IDI2-AS1 Gene

  • C10orf110
  • IDI2-AS

Previous GeneCards Identifiers for IDI2-AS1 Gene

  • GC10P001068
  • GC10P001025
  • GC10P001026
  • GC10P001027
  • GC10P001028
  • GC10P001029

Summaries for IDI2-AS1 Gene

GeneCards Summary for IDI2-AS1 Gene

IDI2-AS1 (IDI2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for IDI2-AS1 Gene

Genomics for IDI2-AS1 Gene

Regulatory Elements for IDI2-AS1 Gene

Enhancers for IDI2-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10G001042 0.9 ENCODE dbSUPER 16.9 +22.0 22002 4.1 PAF1 TBP SMAD5 WRNIP1 MAX CEBPG ZNF394 ZIC2 POLR2A SCRT2 WDR37 IDI2-AS1 GTPBP4 LOC107984285 IDI2
GH10G001054 1.7 FANTOM5 ENCODE dbSUPER 6.8 +33.9 33921 4.4 HDGF PKNOX1 ARNT CREB3L1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 ZBTB7B WDR37 IDI2 IDI2-AS1 IDI1
GH10G001047 1.4 ENCODE dbSUPER 7.3 +26.9 26855 4.0 HNRNPUL1 HDGF PKNOX1 FOXA2 ARNT CREB3L1 AGO1 WRNIP1 ARID4B SIN3A WDR37 IDI2-AS1 IDI2
GH10G000943 1.6 FANTOM5 Ensembl ENCODE dbSUPER 4.8 -78.1 -78127 1.8 PKNOX1 FOXA2 JUN BACH1 ZNF121 POLR2A FOS BHLHE40 GATAD2B IKZF1 GTPBP4 IDI2-AS1 WDR37 PIR46180 LOC101927762
GH10G001035 1 ENCODE dbSUPER 7 +13.7 13699 1.9 USF1 JUN BACH1 MAX EBF1 FOSL1 POLR2A EED FOSL2 FOS WDR37 IDI2-AS1 IDI2
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around IDI2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for IDI2-AS1 Gene

Chromosome:
10
Start:
1,022,637 bp from pter
End:
1,044,201 bp from pter
Size:
21,565 bases
Orientation:
Plus strand

Genomic View for IDI2-AS1 Gene

Genes around IDI2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
IDI2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for IDI2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for IDI2-AS1 Gene

Proteins for IDI2-AS1 Gene

  • Protein details for IDI2-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9NZ38-IDAS1_HUMAN
    Recommended name:
    Uncharacterized protein IDI2-AS1
    Protein Accession:
    Q9NZ38

    Protein attributes for IDI2-AS1 Gene

    Size:
    188 amino acids
    Molecular mass:
    21312 Da
    Quaternary structure:
    No Data Available

neXtProt entry for IDI2-AS1 Gene

Post-translational modifications for IDI2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for IDI2-AS1 Gene

Domains & Families for IDI2-AS1 Gene

Protein Domains for IDI2-AS1 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for IDI2-AS1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with IDI2-AS1: view

No data available for Gene Families and UniProtKB/Swiss-Prot for IDI2-AS1 Gene

Function for IDI2-AS1 Gene

Phenotypes for IDI2-AS1 Gene

GenomeRNAi human phenotypes for IDI2-AS1:
genes like me logo Genes that share phenotypes with IDI2-AS1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for IDI2-AS1 Gene

Localization for IDI2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for IDI2-AS1 Gene

Pathways & Interactions for IDI2-AS1 Gene

SuperPathways for IDI2-AS1 Gene

No Data Available

Interacting Proteins for IDI2-AS1 Gene

Gene Ontology (GO) - Biological Process for IDI2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for IDI2-AS1 Gene

Drugs & Compounds for IDI2-AS1 Gene

No Compound Related Data Available

Transcripts for IDI2-AS1 Gene

mRNA/cDNA for IDI2-AS1 Gene

Unigene Clusters for IDI2-AS1 Gene

IDI2 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for IDI2-AS1 Gene

No ASD Table

Relevant External Links for IDI2-AS1 Gene

GeneLoc Exon Structure for
IDI2-AS1
ECgene alternative splicing isoforms for
IDI2-AS1

Expression for IDI2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for IDI2-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for IDI2-AS1 Gene

This gene is overexpressed in Muscle - Skeletal (x4.4).

Protein differential expression in normal tissues from HIPED for IDI2-AS1 Gene

This gene is overexpressed in Plasma (46.9) and Urine (22.1).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for IDI2-AS1 Gene



Protein tissue co-expression partners for IDI2-AS1 Gene

SOURCE GeneReport for Unigene cluster for IDI2-AS1 Gene:

Hs.728538
genes like me logo Genes that share expression patterns with IDI2-AS1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for IDI2-AS1 Gene

Orthologs for IDI2-AS1 Gene

Evolution for IDI2-AS1 Gene

ENSEMBL:
Gene Tree for IDI2-AS1 (if available)
TreeFam:
Gene Tree for IDI2-AS1 (if available)

No data available for Orthologs for IDI2-AS1 Gene

Paralogs for IDI2-AS1 Gene

(1) SIMAP similar genes for IDI2-AS1 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with IDI2-AS1: view

No data available for Paralogs for IDI2-AS1 Gene

Variants for IDI2-AS1 Gene

Sequence variations from dbSNP and Humsavar for IDI2-AS1 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs1000036562 -- 1,030,195(+) GAATC(A/G)CCTGA intron-variant
rs1000216791 -- 1,039,848(+) GCAAC(A/G)GAAAC intron-variant, nc-transcript-variant, downstream-variant-500B, utr-variant-3-prime
rs1000424885 -- 1,024,700(+) TCAAC(A/C)CAGTC intron-variant, reference, missense
rs1000507322 -- 1,028,959(+) AACTC(C/T)TGTCA intron-variant
rs1000783377 -- 1,039,409(+) AGGAG(C/G/T)TGGCA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for IDI2-AS1 Gene

Variant ID Type Subtype PubMed ID
esv1000079 CNV deletion 20482838
esv1721755 CNV deletion 17803354
esv2156728 CNV deletion 18987734
esv2657863 CNV deletion 23128226
esv2660097 CNV deletion 23128226
esv2673024 CNV deletion 23128226
esv2729350 CNV deletion 23290073
esv2729362 CNV deletion 23290073
esv3622095 CNV loss 21293372
esv3891735 CNV gain 25118596
nsv1046220 CNV gain 25217958
nsv1161921 CNV duplication 26073780
nsv474852 CNV novel sequence insertion 20440878
nsv549765 CNV gain 21841781
nsv549767 CNV loss 21841781
nsv5532 CNV deletion 18451855
nsv951231 CNV duplication 24416366

Relevant External Links for IDI2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
IDI2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for IDI2-AS1 Gene

Disorders for IDI2-AS1 Gene

Relevant External Links for IDI2-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
IDI2-AS1

No disorders were found for IDI2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for IDI2-AS1 Gene

Publications for IDI2-AS1 Gene

  1. Identification of short-lived long non-coding RNAs as surrogate indicators for chemical stress response. (PMID: 24036268) Tani H. … Torimura M. (Biochem. Biophys. Res. Commun. 2013) 2 3 64
  2. Gene expression profiling in the human hypothalamus-pituitary-adrenal axis and full-length cDNA cloning. (PMID: 10931946) Hu R.-M. … Chen J.-L. (Proc. Natl. Acad. Sci. U.S.A. 2000) 3 4 64
  3. Genomic association analysis identifies multiple loci influencing antihypertensive response to an angiotensin II receptor blocker. (PMID: 22566498) Turner S.T. … Boerwinkle E. (Hypertension 2012) 3 64
  4. The DNA sequence and comparative analysis of human chromosome 10. (PMID: 15164054) Deloukas P. … Rogers J. (Nature 2004) 4 64
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for IDI2-AS1 Gene

Sources for IDI2-AS1 Gene

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