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Aliases & Descriptions for IDI1
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| EC 5.3.3.2 3 | | IPP1 2 | | IPPI1 2, 3 | | OTTHUMP00000018951 2 |
| | | Descriptions |
|---|
| IPP isomerase 2 | | IPP isomerase 1 3 | | Isopentenyl pyrophosphate isomerase 1 2, 3 | isopentenyl diphosphate dimethylallyl diphosphate isomerase 1 2 | | isopentenyl-diphosphate delta isomerase 1, 2 | | isopentenyl-diphosphate delta isomerase 1 2 |
|
| | Search outside databases for aliases for IDI1 genePrevious GC identifers: GC10M001056 GC10M001039 |
Summaries for IDI1(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for IDI1: IDI1 encodes a peroxisomally-localized enzyme that catalyzes the interconversion of isopentenyl diphosphate (IPP) to its highly electrophilic isomer, dimethylallyl diphosphate (DMAPP), which are the substrates for the successive reaction that results in the synthesis of farnesyl diphosphate and, ultimately, cholesterol. It has been shown in peroxisomal deficiency diseases such as Zellweger syndrome and neonatal adrenoleukodystrophy that there is reduction in IPP isomerase activity. [provided by RefSeq] UniProtKB/Swiss-Prot: IDI1_HUMAN, Q13907Function: Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP) |
Genomic Location for IDI1
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the IDI1 gene 
Entrez Gene cytogenetic band: 10p15.3 Ensembl cytogenetic band: 10p15.3 HGNC cytogenetic band: 10p15.3IDI1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 10 GeneLoc Exon Structure GeneLoc location for GC10M001075:
(about GC identifiers)
Start:
|
1,075,963 bp from pter |
End:
|
1,085,061 bp from pter |
Size:
|
9,099 bases |
Orientation:
|
minus strand |
RefSeq DNA sequence:- NC_000010.9 NT_077567.3
| Proteins for IDI1
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: IDI1_HUMAN, Q13907 (See
protein sequence)Recommended Name: Isopentenyl-diphosphate Delta-isomerase 1 Size: 227 amino acids; 26319 Da
Cofactor: Binds 1 magnesium ion per subunit
Subunit: Monomer
Subcellular location: Peroxisome
PDB structures from and Proteopedia :2DHO (3D)
 2I6K (3D)
 2ICJ (3D)
 2ICK (3D)
 
Secondary accessions: Q32Q13 Q53GQ6 Q86U81 Q8WUX8 Q96IZ4 Q9BQ74REFSEQ proteins: NP_004499.2
ENSEMBL proteins: ENSP00000370748
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
2 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for IDI1: Assays for IDI1: | Protein
Domains/ Families for IDI1(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry Q13907
ProtoNet protein and cluster: Q13907 2 Blocks protein families: IPB000086 NUDIX hydrolase IPB002667 Isopentenyl-diphosphate delta-isomerase
UniProtKB/Swiss-Prot: IDI1_HUMAN, Q13907Similarity: Belongs to the IPP isomerase type 1 family | Gene Function for IDI1
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_004508
Applied Biosystems Silencer® siRNAs for IDI1
Sigma-Aldrich siRNA and siRNA Panels for IDI1  Sigma-Aldrich shRNA for IDI1  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_004508                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_004508                                  untagged cDNA clones in CMV expression vector (see all 3): NM_004508 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_004508
UniProtKB/Swiss-Prot: IDI1_HUMAN, Q13907Function: Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP)Catalytic activity: Isopentenyl diphosphate = dimethylallyl diphosphateEnzyme Number (IUBMB): EC 5.3.3.2 4 Gene Ontology (GO) molecular function terms (links to tree view): About this table | Pathways & Interactions for IDI1
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
| 1 Sigma-Aldrich "Your Favorite Gene" Pathway for IDI1 (Your Favorite Gene powered by Ingenuity) 
UniProtKB/Swiss-Prot: IDI1_HUMAN, Q13907Pathway: Isoprenoid biosynthesis; dimethylallyl-PP biosynthesis; dimethylallyl-PP from isopentenyl-PP: step 1/1 5/7 Interacting proteins for IDI1 (ENSP000003707483) via UniProtKB, MINT, and/or STRING (see all 7
)About this table
3 Gene Ontology (GO) biological process terms (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0006695 | cholesterol biosynthetic process |
IEA | -- | | GO:0008299 | isoprenoid biosynthetic process |
TAS | 8020941 | | GO:0016117 | carotenoid biosynthetic process |
IEA | -- | About this table
|
Drugs & Compounds for IDI1(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for IDI1 3 Novoseek chemical compound relationships for IDI1 gene
About this table
|
Transcripts for IDI1(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_004508
Sigma-Aldrich siRNA and siRNA Panels for IDI1  Sigma-Aldrich shRNA for IDI1  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_004508 REFSEQ mRNAs for IDI1 gene: NM_004508.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_004508               OriGene GFP tagged cDNA clone in CMV expression vector: NM_004508                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_004508                                  untagged cDNA clones in CMV expression vector (see all 3): NM_004508  Additional cDNA sequence: AF271720.1 AK222875.1 AK303669.1 AK311110.1 BC005247.2 BC006999.2 BC019227.2 BC022418.2 BC025375.2 BC057827.1 BC107893.1 BT006761.1 BX537663.1 BX648472.1 CR590015.1 CR591790.1 CR596142.1 CR596871.1 CR597870.1 CR600177.1 CR602134.1 CR605332.1 CR613243.1 CR613434.1 CR614669.1 CR620656.1 CR624844.1 CR625468.1 CR625705.1 X17025.1 24/32 DOTS entries (see all 32
): DT.92462703 DT.453773 DT.99994257 DT.91911776 DT.100723192 DT.408305 DT.97838100 DT.100883548 DT.100883542 DT.95363710 DT.92462695 DT.121257216 DT.100000543 DT.100746628 DT.100883544 DT.100883550 DT.419678 DT.75101189 DT.100883547 DT.121257271 DT.97860180 DT.121257265 DT.121257275 DT.121257321 24/719 AceView cDNA sequences (see all 719
):AA340633 AW768267 BM854259 AV709829 AI925417 BQ225771 CR596142 AA479182 H72831 BM827224 AI002408 AA758485 BM977594 AL533574 AW105497 AI799723 AI189615 CA439039 CR624844 AL558036 CR625705 BQ776340 CR613434 BQ021407
highest scoring ESTs for IDI1:AA018738 AL514404 AL695172 AL701325 AW362018 BC057827 BE891119 BF207964 BF210380 BF238776 Unigene Cluster for IDI1: Isopentenyl-diphosphate delta isomerase 1 Hs.283652 [show with all ESTs]Unigene Representative Sequence: BX537663
GeneLoc Exon Structure
4 Alternative Splicing Database (ASD) splice patterns (SP) for IDI1
| ExUns: | 1a | · | 1b | · | 1c | ^ | 2 | ^ | 3a | · | 3b | ^ | 4 | ^ | 5a | · | 5b | ^ | 6a | · | 6b | |
| SP1: | |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |
| SP2: | |   | |   | |   | - |   | - |   | - |   | |   | |   | |   | |   | |   | |
| SP3: | |   | |   | |   | |   | - |   | - |   | |   | |   | |   | |   | |   | |
| SP4: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for IDI1
1 Ensembl transcript including schematic representation: ENST00000381344
|
Expression for IDI1
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| IDI1 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for IDI1
1 / 2 / 3 8 probe-sets matching IDI1 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: --
SOURCE GeneReport for Unigene cluster: Hs.283652
Expression variation in blood from EXPOLDB for IDI1 |
Orthologs for IDI1
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for IDI1 gene from 5/19 species (see all 19
)
About this table Species with no ortholog for IDI1
ENSEMBL Gene Tree for IDI1 | Paralogs for IDI1(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for IDI1 gene
- IDI22
|
SNPs/Variants for IDI1(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for IDI1 (up to first 250kb)
|
Disorders & Mutations for IDI1
(in which this Gene is Involved, According to
OMIM, UniProtKB,
PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 604055
1 PharmGKB disease relationship for IDI1 geneAbout this table
Human Genome Epidemiology Navigator: IDI1 (1 document)
|
Medical News for IDI1(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for IDI1 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/26 PubMed articles for IDI1 gene (see all 26
):- A human promyelocyte mRNA transiently induced by TPA is homologous to yeast IPP isomerase. (PubMed id 8020941)2, 3, 4 Xuan J.W.... Denhardt D.T. (1994)
- Human isopentenyl diphosphate: dimethylallyl diphosphate isomerase: overproduction, purification, and characterization. (PubMed id 8806705)1, 3, 4 Hahn F.M.... Poulter C.D. (1996)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- The crystal structure of human isopentenyl diphosphate isomerase at 1.7 A resolution reveals its catalytic mechanism in isoprenoid biosynthesis. (PubMed id 17250851)1, 4 Zheng W.... Rao Z. (2007)
- Copper induces the expression of cholesterogenic genes in human macrophages. (PubMed id 12860252)1, 3 Svensson P.A....Carlsson B. (2003)
- Multiple genetic variants along candidate pathways influence plasma high-density lipoprotein cholesterol concentrations. (PubMed id 18660489)3 Lu Y....Boer J.M. (2008)
- Identifying leukocyte gene expression patterns associated with plasma lipid levels in human subjects. (PubMed id 16806233)3 Ma J....Liew C.C. (2007)
- Classification of pediatric acute lymphoblastic leukemia by gene expression profiling. (PubMed id 12730115)7 Ross M.E....Downing J.R. (2003)
- Isopentenyl-diphosphate isomerases in human and mouse: evolutionary analysis of a mammalian gene duplication. (PubMed id 14629038)3 Breitling R....Krisans S.K. (2003)
- Classification, subtype discovery, and prediction of outcome in pediatric acute lymphoblastic leukemia by gene expression profiling. (PubMed id 12086872)7 Yeoh E.J....Downing J.R. (2002)
|
Search for IDI1
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing IDI1
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing IDI1
(According to HUGE)
About This Section
| -- |
Specialized Databases showing IDI1(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for IDI1(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for IDI1:

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