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Aliases & Descriptions for IDH2
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| EC 1.1.1.42 3 | | ICD-M 2, 3 | | IDH 2, 3 | | IDHM 2 | | IDP 2, 3 | | IDPM 2 | | mNADP-IDH 2 |
| | | Descriptions |
|---|
| NADP(+)-specific ICDH 3 | | NADP+-specific ICDH 2 | | Oxalosuccinate decarboxylase 2, 3 | | isocitrate dehydrogenase 2 (NADP+), mitochondrial 2 | | isocitrate dehydrogenase, mitochondrial 2 |
|
| | Search outside databases for aliases for IDH2 genePrevious GC identifers: GC15M087031 GC15M084133 GC15M088213 GC15M088356 |
Summaries for IDH2(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for IDH2: Isocitrate dehydrogenases catalyze the oxidative decarboxylation of isocitrate to 2-oxoglutarate. These enzymes belong to two distinct subclasses, one of which utilizes NAD(+) as the electron acceptor and the other NADP(+). Five isocitrate dehydrogenases have been reported: three NAD(+)-dependent isocitrate dehydrogenases, which localize to the mitochondrial matrix, and two NADP(+)-dependent isocitrate dehydrogenases, one of which is mitochondrial and the other predominantly cytosolic. Each NADP(+)-dependent isozyme is a homodimer. The protein encoded by this gene is the NADP(+)-dependent isocitrate dehydrogenase found in the mitochondria. It plays a role in intermediary metabolism and energy production. This protein may tightly associate or interact with the pyruvate dehydrogenase complex. [provided by RefSeq] UniProtKB/Swiss-Prot: IDHP_HUMAN, P48735Function: Plays a role in intermediary metabolism and energy production. It may tightly associate or interact with the pyruvate dehydrogenase complexGene Wiki entry for IDH2 |
Genomic Location for IDH2
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the IDH2 gene 
Entrez Gene cytogenetic band: 15q26.1 Ensembl cytogenetic band: 15q26.1 HGNC cytogenetic band: 15q21-qterIDH2 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 15 GeneLoc Exon Structure GeneLoc location for GC15M088428:
(about GC identifiers)
Start:
|
88,428,214 bp from pter |
End:
|
88,446,712 bp from pter |
Size:
|
18,499 bases |
Orientation:
|
minus strand |
RefSeq DNA sequence:- NC_000015.8 NT_010274.16
| Proteins for IDH2
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: IDHP_HUMAN, P48735 (See
protein sequence)Recommended Name: Isocitrate dehydrogenase [NADP], mitochondrial precursor Size: 452 amino acids; 50909 Da
Cofactor: Binds 1 magnesium or manganese ion per subunit (By similarity)
Subunit: Homodimer
Subcellular location: Mitochondrion
Secondary accessions: Q96GT3Post-translational modifications:
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_002159.2
ENSEMBL proteins: ENSP00000331897
Human Recombinant Proteins               OriGene Purified Recombinant Human Protein: IDH2 
1 Gene Ontology (GO) cellular component term (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0005739 | mitochondrion |
IEA | -- | About this table
Antibodies for IDH2: Assays for IDH2: | Protein
Domains/ Families for IDH2(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P48735
ProtoNet protein and cluster: P48735 1 Blocks protein family: IPB001804 Isocitrate/isopropylmalate dehydrogenase
UniProtKB/Swiss-Prot: IDHP_HUMAN, P48735Similarity: Belongs to the isocitrate and isopropylmalate dehydrogenases family | Gene Function for IDH2
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_002168
Applied Biosystems Silencer® siRNAs for IDH2
Sigma-Aldrich siRNA for IDH2  Sigma-Aldrich shRNA for IDH2  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_002168                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_002168                                  untagged cDNA clone in CMV expression vector: NM_002168 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_002168
UniProtKB/Swiss-Prot: IDHP_HUMAN, P48735Function: Plays a role in intermediary metabolism and energy production. It may tightly associate or interact with the pyruvate dehydrogenase complexCatalytic activity: Isocitrate + NADP(+) = 2-oxoglutarate + CO(2) + NADPHCatalytic activity: Oxalosuccinate + NADP(+) = 2-oxoglutarate + CO(2) + NADPHEnzyme Number (IUBMB): EC 1.1.1.42 Genatlas biochemistry entry for IDH2:isocitrate dehydrogenase 2,mitochrondrial matrix,NADPH dependent,46.5 kDa,catalyzing the third step of citric acid cycle1 MGI phenotypic allele for Idh2 (no phenotypes)
5 Gene Ontology (GO) molecular function terms (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0000287 | magnesium ion binding |
IEA | -- | | GO:0004450 | isocitrate dehydrogenase (NADP+) activity |
IEA | -- | | GO:0016491 | oxidoreductase activity |
IEA | -- | | GO:0016616 | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor |
IEA | -- | | GO:0030145 | manganese ion binding |
IEA | -- | About this table | Pathways & Interactions for IDH2
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
| 2 Sigma-Aldrich "Your Favorite Gene" Pathways for IDH2 (Your Favorite Gene powered by Ingenuity) 
5/42 Interacting proteins for IDH2 (ENSP000003318973) via UniProtKB, MINT, and/or STRING (see all 42
)About this table
5 Gene Ontology (GO) biological process terms (links to tree view): About this table
|
Drugs & Compounds for IDH2(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for IDH2 2 Novoseek chemical compound relationships for IDH2 gene
About this table
|
Transcripts for IDH2(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_002168
Sigma-Aldrich siRNA for IDH2  Sigma-Aldrich shRNA for IDH2  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_002168 REFSEQ mRNAs for IDH2 gene: NM_002168.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_002168               OriGene GFP tagged cDNA clone in CMV expression vector: NM_002168                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_002168                                  untagged cDNA clone in CMV expression vector: NM_002168  Additional cDNA sequence: AK222916.1 AK294148.1 AK299987.1 AK312627.1 AK316388.1 BC009244.2 BC071828.1 CR590507.1 CR593087.1 CR593589.1 CR594870.1 CR595435.1 CR597564.1 CR597829.1 CR598530.1 CR599159.1 CR599284.1 CR600286.1 CR600938.1 CR602079.1 CR602902.1 CR604829.1 CR606440.1 CR606745.1 CR607058.1 CR607159.1 CR607742.1 CR610676.1 CR610749.1 CR610921.1 CR613707.1 CR615856.1 CR616318.1 CR617229.1 CR617266.1 CR617370.1 CR619261.1 CR619410.1 CR622745.1 CR625291.1 CR625730.1 CR625817.1 U52144.1 X69433.1 24/32 DOTS entries (see all 32
): DT.448959 DT.100808539 DT.92065665 DT.121027184 DT.100649521 DT.121027328 DT.100649506 DT.100649523 DT.100649536 DT.91766554 DT.95371733 DT.121027360 DT.95371734 DT.91808314 DT.100649511 DT.100649533 DT.121027162 DT.432480 DT.121027172 DT.121027397 DT.75168204 DT.86841012 DT.100649520 DT.100649527 24/703 AceView cDNA sequences (see all 703
):F37142 BM722584 CR619410 BM832433 BC009244 AW025010 CF127701 CR599159 BG397409 AA371843 BG105261 CR625730 AA573936 BE617248 CR602079 AJ346524 CR610921 BU859096 AL542553 CF994762 BM796735 BX419103 BU180421 BM509286
highest scoring ESTs for IDH2:X69433 AA194522 AA776602 AL516205 AL516853 AL517046 AL544416 AL548933 AL551048 AL557001 Unigene Cluster for IDH2: Isocitrate dehydrogenase 2 (NADP+), mitochondrial Hs.596461 [show with all ESTs]Unigene Representative Sequence: X69433
GeneLoc Exon Structure
5/6 Alternative Splicing Database (ASD) splice patterns (SP) for IDH2 (see all 6
)
| ExUns: | 1a | · | 1b | ^ | 2 | ^ | 3 | ^ | 4a | · | 4b | ^ | 5 | ^ | 6 | ^ | 7 | ^ | 8a | · | 8b | ^ | 9 | ^ | 10 | ^ | 11 | ^ | 12 | ^ | 13 | ^ | 14 | ^ | 15 | |
| SP1: | |   | |   | - |   | - |   | |   | - |   | |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP2: | |   | |   | - |   | - |   | |   | - |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP3: | |   | |   | - |   | - |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP4: | |   | |   | - |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP5: | |   | |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for IDH2
1 Ensembl transcript including schematic representation: ENST00000330062
|
Expression for IDH2
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| IDH2 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for IDH2
1 / 2 / 3 3 probe-sets matching IDH2 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: GTGCCATATT
SOURCE GeneReport for Unigene cluster: Hs.596461
Expression variation in blood from EXPOLDB for IDH2 |
Orthologs for IDH2
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for IDH2 gene from 5/21 species (see all 21
)
About this table Species with no ortholog for IDH2
ENSEMBL Gene Tree for IDH2 | Paralogs for IDH2(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for IDH2 gene
- IDH12
|
SNPs/Variants for IDH2(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for IDH2 (up to first 250kb)
|
Disorders & Mutations for IDH2
(in which this Gene is Involved, According to
OMIM, UniProtKB,
PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 147650
|
Medical News for IDH2(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for IDH2 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/29 PubMed articles for IDH2 gene (see all 29
): |
Search for IDH2
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing IDH2
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing IDH2
(According to HUGE)
About This Section
| -- |
Specialized Databases showing IDH2(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for IDH2(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for IDH2:

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Incremental update: 13 Oct 2009
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