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Aliases for IDH1-AS1 Gene

Subcategory (RNA class) for IDH1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for IDH1-AS1 Gene

  • IDH1 Antisense RNA 1 2 3 5
  • IDH1 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for IDH1-AS1 Gene

Previous GeneCards Identifiers for IDH1-AS1 Gene

  • GC02P209121

Summaries for IDH1-AS1 Gene

GeneCards Summary for IDH1-AS1 Gene

IDH1-AS1 (IDH1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for IDH1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for IDH1-AS1 Gene

Genomics for IDH1-AS1 Gene

GeneHancer (GH) Regulatory Elements for IDH1-AS1 Gene

Promoters and enhancers for IDH1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02I208251 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 561.4 -1.5 -1456 4.8 HDGF PKNOX1 SMAD1 FOXA2 MLX ZFP64 ARID4B SIN3A DMAP1 ZNF2 IDH1-AS1 IDH1 CREB1 PIKFYVE PTH2R TPT1P2 GC02P208116
GH02I208256 Enhancer 0.9 Ensembl ENCODE 550.8 +1.8 1846 1 SOX5 SOX13 CTCF FOXA2 SAP130 ZFP64 ARID4B DMAP1 ZNF48 RAD21 IDH1-AS1 PIKFYVE IDH1 GC02P208116
GH02I208320 Enhancer 0.7 ENCODE dbSUPER 21.1 +65.6 65628 1.4 IKZF1 EBF1 IKZF2 RUNX3 NR2F2 IDH1-AS1 IDH1 PIKFYVE PTH2R PIR36576 GC02P208116
GH02I208310 Enhancer 1.1 Ensembl ENCODE dbSUPER 11.1 +57.3 57320 3.7 PAF1 PKNOX1 SMAD1 TRIM22 CHD1 JUNB BATF IRF4 E4F1 RELA IDH1 IDH1-AS1 PIKFYVE PIR36576 PTH2R GC02P208116
GH02I208112 Enhancer 1 Ensembl ENCODE 11 -142.2 -142201 1.7 MZF1 FEZF1 ZNF2 RFX5 ZNF213 ZNF366 RCOR1 OVOL3 REST ZNF843 CRYGEP CRYGB IDH1-AS1 IDH1 CRYGA FZD5 CRYGD GC02P208116
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around IDH1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for IDH1-AS1 Gene

Genomic Locations for IDH1-AS1 Gene
chr2:208,255,233-208,256,194
(GRCh38/hg38)
Size:
962 bases
Orientation:
Plus strand
chr2:209,119,957-209,120,905
(GRCh37/hg19)

Genomic View for IDH1-AS1 Gene

Genes around IDH1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
IDH1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for IDH1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for IDH1-AS1 Gene

Proteins for IDH1-AS1 Gene

Post-translational modifications for IDH1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for IDH1-AS1 Gene

Domains & Families for IDH1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for IDH1-AS1 Gene

Function for IDH1-AS1 Gene

Phenotypes From GWAS Catalog for IDH1-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for IDH1-AS1 Gene

Localization for IDH1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for IDH1-AS1 Gene

Pathways & Interactions for IDH1-AS1 Gene

SuperPathways for IDH1-AS1 Gene

No Data Available

Interacting Proteins for IDH1-AS1 Gene

Gene Ontology (GO) - Biological Process for IDH1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for IDH1-AS1 Gene

Drugs & Compounds for IDH1-AS1 Gene

No Compound Related Data Available

Transcripts for IDH1-AS1 Gene

mRNA/cDNA for IDH1-AS1 Gene

(1) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for IDH1-AS1 Gene

IDH1 antisense RNA 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for IDH1-AS1 Gene

No ASD Table

Relevant External Links for IDH1-AS1 Gene

GeneLoc Exon Structure for
IDH1-AS1
ECgene alternative splicing isoforms for
IDH1-AS1

Expression for IDH1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for IDH1-AS1 Gene

SOURCE GeneReport for Unigene cluster for IDH1-AS1 Gene:

Hs.668038
genes like me logo Genes that share expression patterns with IDH1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for IDH1-AS1 Gene

Orthologs for IDH1-AS1 Gene

Evolution for IDH1-AS1 Gene

ENSEMBL:
Gene Tree for IDH1-AS1 (if available)
TreeFam:
Gene Tree for IDH1-AS1 (if available)

No data available for Orthologs for IDH1-AS1 Gene

Paralogs for IDH1-AS1 Gene

No data available for Paralogs for IDH1-AS1 Gene

Variants for IDH1-AS1 Gene

Sequence variations from dbSNP and Humsavar for IDH1-AS1 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1000115308 -- 208,253,918(+) T/C upstream_transcript_variant
rs1000549437 -- 208,253,677(+) C/G upstream_transcript_variant
rs1000842769 -- 208,256,287(+) G/A downstream_transcript_variant
rs1001726669 -- 208,253,986(+) T/C upstream_transcript_variant
rs1002177354 -- 208,255,887(+) C/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for IDH1-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3594112 CNV loss 21293372
nsv584297 CNV gain 21841781
nsv834517 CNV loss 17160897

Additional Variant Information for IDH1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
IDH1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for IDH1-AS1 Gene

Disorders for IDH1-AS1 Gene

Additional Disease Information for IDH1-AS1

No disorders were found for IDH1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for IDH1-AS1 Gene

Publications for IDH1-AS1 Gene

No publications were found for IDH1-AS1 Gene.

Products for IDH1-AS1 Gene

Sources for IDH1-AS1 Gene

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