Free for academic non-profit institutions. Other users need a Commercial license

Aliases for IDH1-AS1 Gene

Subcategory (RNA class) for IDH1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for IDH1-AS1 Gene

  • IDH1 Antisense RNA 1 2 3 5
  • IDH1 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for IDH1-AS1 Gene

Previous GeneCards Identifiers for IDH1-AS1 Gene

  • GC02P209121

Summaries for IDH1-AS1 Gene

GeneCards Summary for IDH1-AS1 Gene

IDH1-AS1 (IDH1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for IDH1-AS1 Gene

Genomics for IDH1-AS1 Gene

Regulatory Elements for IDH1-AS1 Gene

Enhancers for IDH1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02F208320 0.7 Ensembl ENCODE 21.1 +65.6 65628 1.4 IKZF1 EED EBF1 IDH1-AS1 IDH1 PIKFYVE PTH2R PIR36576
GH02F208251 1.1 ENCODE 11.4 -1.5 -1457 4.8 PKNOX1 MLX ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF143 ZNF263 IDH1-AS1 ENSG00000223725 PIKFYVE PTH2R TPT1P2
GH02F208134 1.1 Ensembl ENCODE 10.2 -119.4 -119408 2.1 ELF3 MLX ZNF48 ZSCAN9 RARA CREM MIXL1 THAP11 NFYC MXD4 CRYGA CRYGEP IDH1-AS1 IDH1 LOC100533727 CRYGD
GH02F208310 1 Ensembl ENCODE 11.1 +57.4 57421 3.9 PAF1 TBP PKNOX1 SIN3A CHD1 JUNB E2F4 RELA JUND POLR2A IDH1 IDH1-AS1 PIKFYVE PIR36576 PTH2R
GH02F208175 0.9 Ensembl 11.9 -79.9 -79933 0.2 ELF3 CBX3 ATF1 ARID4B ZSCAN9 RAD21 RARA RFX5 YY1 ZNF143 IDH1-AS1 IDH1 CRYGB CRYGC CRYGD C2orf80 CRYGA
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around IDH1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for IDH1-AS1 Gene

Chromosome:
2
Start:
208,255,233 bp from pter
End:
208,256,194 bp from pter
Size:
962 bases
Orientation:
Plus strand

Genomic View for IDH1-AS1 Gene

Genes around IDH1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
IDH1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for IDH1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for IDH1-AS1 Gene

Proteins for IDH1-AS1 Gene

Post-translational modifications for IDH1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for IDH1-AS1 Gene

Domains & Families for IDH1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for IDH1-AS1 Gene

Function for IDH1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for IDH1-AS1 Gene

Localization for IDH1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for IDH1-AS1 Gene

Pathways & Interactions for IDH1-AS1 Gene

SuperPathways for IDH1-AS1 Gene

No Data Available

Interacting Proteins for IDH1-AS1 Gene

Gene Ontology (GO) - Biological Process for IDH1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for IDH1-AS1 Gene

Transcripts for IDH1-AS1 Gene

mRNA/cDNA for IDH1-AS1 Gene

(1) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for IDH1-AS1 Gene

IDH1 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for IDH1-AS1 Gene

No ASD Table

Relevant External Links for IDH1-AS1 Gene

GeneLoc Exon Structure for
IDH1-AS1
ECgene alternative splicing isoforms for
IDH1-AS1

Expression for IDH1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for IDH1-AS1 Gene

SOURCE GeneReport for Unigene cluster for IDH1-AS1 Gene:

Hs.668038
genes like me logo Genes that share expression patterns with IDH1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for IDH1-AS1 Gene

Orthologs for IDH1-AS1 Gene

Evolution for IDH1-AS1 Gene

ENSEMBL:
Gene Tree for IDH1-AS1 (if available)
TreeFam:
Gene Tree for IDH1-AS1 (if available)

No data available for Orthologs for IDH1-AS1 Gene

Paralogs for IDH1-AS1 Gene

No data available for Paralogs for IDH1-AS1 Gene

Variants for IDH1-AS1 Gene

Sequence variations from dbSNP and Humsavar for IDH1-AS1 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs10194538 -- 208,256,041(+) ATGAA(A/G)TTGGA nc-transcript-variant, upstream-variant-2KB
rs10207062 -- 208,256,243(+) TTATT(G/T)ATTTA downstream-variant-500B, upstream-variant-2KB
rs1023751 -- 208,253,525(-) TACTT(C/T)ATATG intron-variant, upstream-variant-2KB
rs112631436 -- 208,255,318(+) GTCCC(A/G/T)AATCC nc-transcript-variant, upstream-variant-2KB
rs113159769 -- 208,256,223(+) TCCAA(-/TATTTATT)TATTT downstream-variant-500B, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for IDH1-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3594112 CNV loss 21293372
nsv584297 CNV gain 21841781
nsv834517 CNV loss 17160897

Relevant External Links for IDH1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
IDH1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for IDH1-AS1 Gene

Disorders for IDH1-AS1 Gene

Relevant External Links for IDH1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
IDH1-AS1

No disorders were found for IDH1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for IDH1-AS1 Gene

Publications for IDH1-AS1 Gene

No publications were found for IDH1-AS1 Gene.

Products for IDH1-AS1 Gene

Sources for IDH1-AS1 Gene

Content
Loading form....