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Aliases & Descriptions for IDH1
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| EC 1.1.1.42 3 | | IDCD 2 | | IDH 2, 3 | | IDP 2, 3 | | IDPC 2 | | PICD 2, 3 |
| | | Descriptions |
|---|
| Cytosolic NADP-isocitrate dehydrogenase 3 | | NADP(+)-specific ICDH 3 | | NADP+-specific ICDH 2 | | NADP-dependent isocitrate dehydrogenase, cytosolic 2 | | NADP-dependent isocitrate dehydrogenase, peroxisomal 2 | | Oxalosuccinate decarboxylase 2, 3 | | isocitrate dehydrogenase 1 (NADP+), soluble 2 |
|
| | Search outside databases for aliases for IDH1 genePrevious GC identifers: GC02M207376 GC02M207825 GC02M209064 GC02M209303 GC02M208926 |
Summaries for IDH1(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for IDH1: Isocitrate dehydrogenases catalyze the oxidative decarboxylation of isocitrate to 2-oxoglutarate. These enzymes belong to two distinct subclasses, one of which utilizes NAD(+) as the electron acceptor and the other NADP(+). Five isocitrate dehydrogenases have been reported: three NAD(+)-dependent isocitrate dehydrogenases, which localize to the mitochondrial matrix, and two NADP(+)-dependent isocitrate dehydrogenases, one of which is mitochondrial and the other predominantly cytosolic. Each NADP(+)-dependent isozyme is a homodimer. The protein encoded by this gene is the NADP(+)-dependent isocitrate dehydrogenase found in the cytoplasm and peroxisomes. It contains the PTS-1 peroxisomal targeting signal sequence. The presence of this enzyme in peroxisomes suggests roles in the regeneration of NADPH for intraperoxisomal reductions, such as the conversion of 2, 4-dienoyl-CoAs to 3-enoyl-CoAs, as well as in peroxisomal reactions that consume 2-oxoglutarate, namely the alpha-hydroxylation of phytanic acid. The cytoplasmic enzyme serves a significant role in cytoplasmic NADPH production. [provided by RefSeq]
|
Genomic Location for IDH1
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the IDH1 gene 
Entrez Gene cytogenetic band: 2q33.3 Ensembl cytogenetic band: 2q33.3 HGNC cytogenetic band: 2q32-qterIDH1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 2 GeneLoc Exon Structure GeneLoc location for GC02M208809:
(about GC identifiers)
Start:
|
208,809,198 bp from pter |
End:
|
208,828,051 bp from pter |
Size:
|
18,854 bases |
Orientation:
|
minus strand |
RefSeq DNA sequence:- NC_000002.10 NT_005403.16
| Proteins for IDH1
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: IDHC_HUMAN, O75874 (See
protein sequence)Recommended Name: Isocitrate dehydrogenase [NADP] cytoplasmic Size: 414 amino acids; 46659 Da
Cofactor: Binds 1 magnesium or manganese ion per subunit
Subunit: Homodimer
Subcellular location: Cytoplasm. Peroxisome
Miscellaneous: Cancer mutations affecting Arg-132 are tissue-specific, and suggest that this residue plays a unique role in the development of high-grade gliomas
PDB structure from and Proteopedia :1T09 (3D)
 1T0L (3D)
 
Secondary accessions: Q93090 Q9NTJ9 Q9UKW8Post-translational modifications:
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_005887.2
ENSEMBL proteins: ENSP00000260985
Human Recombinant Proteins               OriGene Purified Recombinant Human Protein: IDH1 
3 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for IDH1: Assays for IDH1: | Protein
Domains/ Families for IDH1(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry O75874
ProtoNet protein and cluster: O75874 1 Blocks protein family: IPB001804 Isocitrate/isopropylmalate dehydrogenase
UniProtKB/Swiss-Prot: IDHC_HUMAN, O75874Similarity: Belongs to the isocitrate and isopropylmalate dehydrogenases family | Gene Function for IDH1
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_005896
Applied Biosystems Silencer® siRNAs for IDH1
Sigma-Aldrich siRNA and siRNA Panels for IDH1  Sigma-Aldrich shRNA for IDH1  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_005896                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_005896                                  untagged cDNA clones in CMV expression vector (see all 2): NM_005896 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_005896
UniProtKB/Swiss-Prot: IDHC_HUMAN, O75874Catalytic activity: Isocitrate + NADP(+) = 2-oxoglutarate + CO(2) + NADPHCatalytic activity: Oxalosuccinate + NADP(+) = 2-oxoglutarate + CO(2) + NADPHEnzyme Number (IUBMB): EC 1.1.1.42 Genatlas biochemistry entry for IDH1:isocitrate dehydrogenase 1,cytosolic,NADPH dependent,third step of citric acid cycle1 MGI phenotypic allele for Idh1 (no phenotypes)
5 Gene Ontology (GO) molecular function terms (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0000287 | magnesium ion binding |
IEA | -- | | GO:0004450 | isocitrate dehydrogenase (NADP+) activity |
TAS | 9866202 | | GO:0016491 | oxidoreductase activity |
IEA | -- | | GO:0016616 | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor |
IEA | -- | | GO:0030145 | manganese ion binding |
IEA | -- | About this table | Pathways & Interactions for IDH1
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
| 2 Sigma-Aldrich "Your Favorite Gene" Pathways for IDH1 (Your Favorite Gene powered by Ingenuity) 
5/30 Interacting proteins for IDH1 (ENSP000002609853) via UniProtKB, MINT, and/or STRING (see all 30
)About this table
5/7 Gene Ontology (GO) biological process terms (links to tree view) (see all 7
): About this table
|
Drugs & Compounds for IDH1(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for IDH1 7 Novoseek chemical compound relationships for IDH1 gene
| Compound |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| isocitrate |
94.63 |
53 |
11284679 (2), 9512021 (2), 9211842 (1), 10521434 (1) (see all 32) |
| nadp+ |
68.23 |
6 |
9512021 (3), 10521434 (1), 17029707 (1) |
| glucose 6-phosphate |
48.88 |
5 |
10521434 (1), 16143603 (1), 8660340 (1), 12232660 (1) |
| nadph |
41.94 |
10 |
9512021 (3), 10521434 (2), 8987537 (1), 12923220 (1) (see all 5) |
| glyceraldehyde 3-phosphate |
33.16 |
2 |
8660340 (1), 15355353 (1) |
| calcium |
0.00 |
4 |
15355353 (2) |
| fatty acid |
0.00 |
3 |
10521434 (1), 8987537 (1) |
About this table
|
Transcripts for IDH1(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_005896
Sigma-Aldrich siRNA and siRNA Panels for IDH1  Sigma-Aldrich shRNA for IDH1  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_005896 REFSEQ mRNAs for IDH1 gene: NM_005896.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_005896               OriGene GFP tagged cDNA clone in CMV expression vector: NM_005896                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_005896                                  untagged cDNA clones in CMV expression vector (see all 2): NM_005896  Additional cDNA sequence: AF020038.1 AF113917.1 AK125247.1 AK302105.1 AK312242.1 AL136702.1 BC012846.1 BC021046.1 BC093020.1 BX537411.1 CR533522.1 CR536499.1 CR541695.1 CR594054.1 CR608733.1 U62389.1 24/33 DOTS entries (see all 33
): DT.100845600 DT.91776646 DT.219513 DT.120999209 DT.100766638 DT.120999216 DT.437002 DT.95162526 DT.107236 DT.100845598 DT.120999211 DT.99944670 DT.91776651 DT.95075652 DT.95162531 DT.120999163 DT.91698485 DT.100735322 DT.102830286 DT.120999132 DT.95162499 DT.95162529 DT.97809111 DT.120999133 24/528 AceView cDNA sequences (see all 528
):CR608733 BQ649977 BQ962023 BX417974 CB156132 BG030654 BE872584 BQ217274 F06739 BQ432452 BQ439424 AA327670 AA313574 AA904956 AA886789 BM470608 AA827594 AI263053 F03511 BG716785 BM796266 U62389 BF445518 CR594054
highest scoring ESTs for IDH1:AF020038 AA075922 AA076246 AA218606 AA305236 AA313574 AA319329 AA337237 AA356019 AF113917 Unigene Cluster for IDH1: Isocitrate dehydrogenase 1 (NADP+), soluble Hs.593422 [show with all ESTs]Unigene Representative Sequence: AF020038
GeneLoc Exon Structure
5/8 Alternative Splicing Database (ASD) splice patterns (SP) for IDH1 (see all 8
)
| ExUns: | 1 | ^ | 2a | · | 2b | · | 2c | · | 2d | ^ | 3 | ^ | 4 | ^ | 5 | ^ | 6a | · | 6b | · | 6c | · | 6d | ^ | 7a | · | 7b | ^ | 8 | ^ | 9a | · | 9b | ^ | 10 | ^ | 11a | · | 11b | ^ | 12a | · | 12b | ^ | 13 | |
| SP1: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP2: | |   | |   | |   | |   | |   | - |   | - |   | |   | |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP3: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | - |   | - |   | |   | |   | |   | |   | |
| SP4: | |   | - |   | - |   | |   | |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP5: | |   | |   | |   | |   | |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for IDH1
1 Ensembl transcript including schematic representation: ENST00000345146
|
Expression for IDH1
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| IDH1 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for IDH1
1 / 2 / 3 5 probe-sets matching IDH1 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: --
SOURCE GeneReport for Unigene cluster: Hs.593422
Expression variation in blood from EXPOLDB for IDH1 |
Orthologs for IDH1
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for IDH1 gene from 5/23 species (see all 23
)
About this table Species with no ortholog for IDH1
ENSEMBL Gene Tree for IDH1 | Paralogs for IDH1(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for IDH1 gene
- IDH22
|
SNPs/Variants for IDH1(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for IDH1 (up to first 250kb)
|
Disorders & Mutations for IDH1
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 147700
UniProtKB/Swiss-Prot: IDHC_HUMAN, O75874
Defects in IDH1 are a cause of glioblastoma multiforme (GBM) [MIM:137800]; also called familial glioma of brain. Gliomas are central nervous system neoplasms derived from glial cells and comprise astrocytomas, glioblastoma multiforme, oligodendrogliomas, and ependymomas5 Novoseek disease relationships for IDH1 gene
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| oligodendroglioma |
48.12 |
4 |
19246647 (3), 18985363 (2), 19228619 (1) |
| astrocytoma |
28.92 |
4 |
19246647 (3), 18985363 (2), 19228619 (1) |
| glioblastoma |
26.73 |
10 |
18985363 (4), 19246647 (3), 19228619 (2) |
| glioma |
25.65 |
6 |
19228619 (3), 18985363 (1), 19117336 (1), 19246647 (1) (see all 5) |
| tumors |
0.00 |
11 |
19228619 (4), 19359588 (4), 19117336 (2), 18985363 (1) |
About this table
Human Gene Mutation Database: IDH1 Human Genome Epidemiology Navigator: IDH1 (5 documents)
|
Medical News for IDH1(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for IDH1 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/58 PubMed articles for IDH1 gene (see all 58
):- The human PICD gene encodes a cytoplasmic and peroxisomal NADP(+)- dependent isocitrate dehydrogenase. (PubMed id 10521434)1, 3, 4 Geisbrecht B.V. and Gould S.J. (1999)
- IDH1 mutations at residue p.R132 (IDH1(R132)) occur frequently in high-grade gliomas but not in other solid tumors. (PubMed id 19117336)1, 3, 4 Bleeker F.E....Bardelli A. (2009)
- An integrated genomic analysis of human glioblastoma multiforme. (PubMed id 18772396)1, 3, 4 Parsons D.W....Kinzler K.W. (2008)
- Structures of human cytosolic NADP-dependent isocitrate dehydrogenase reveal a novel self-regulatory mechanism of activity. (PubMed id 15173171)1, 3, 4 Xu X.... Ding J. (2004)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- Towards a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs. (PubMed id 11230166)3, 4 Wiemann S.... Poustka A. (2001)
- Cytosolic isocitrate dehydrogenase in humans, mice, and voles and phylogenetic analysis of the enzyme family. (PubMed id 9866202)3, 4 Nekrutenko A.... Baker R.J. (1998)
- IDH1 mutations are early events in the development of astrocytomas and oligodendrogliomas. (PubMed id 19246647)1, 3 Watanabe T....Ohgaki H. (2009)
- IDH1 and IDH2 mutations in gliomas. (PubMed id 19228619)1, 3 Yan H....Bigner D.D. (2009)
- Glioma-derived mutations in IDH1 dominantly inhibit IDH1 catalytic activity and induce HIF-1alpha. (PubMed id 19359588)1, 3 Zhao S....Xiong Y. (2009)
|
Search for IDH1
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing IDH1
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing IDH1
(According to HUGE)
About This Section
| -- |
Specialized Databases showing IDH1(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| Name | Description |
| Wikipedia | http://en.wikipedia.org/wiki/Isocitrate_dehydrogenase |
|
| | | About This Section
| --
| Services for IDH1(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
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