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Aliases & Descriptions for ID3
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| 1R21 3 | | HEIR-1 1, 2, 3 | | OTTHUMP00000003263 2 | | bHLHb25 1, 2 |
| | | Descriptions |
|---|
| Helix-loop-helix protein HEIR-1 3 | | ID-like protein inhibitor HLH 1R21 3 | | Inhibitor of DNA binding 3 2, 3 | inhibitor of DNA binding 3, dominant negative helix-loop-helix protein 2 |
|
| | Search outside databases for aliases for ID3 genePrevious GC identifers: GC01M023442 GC01M022955 GC01M023353 GC01M023629 |
Summaries for ID3(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for ID3: Members of the ID family of helix-loop-helix (HLH) proteins lack a basic DNA-binding domain and inhibit transcription through formation of nonfunctional dimers that are incapable of binding to DNA.[supplied by OMIM] UniProtKB/Swiss-Prot: ID3_HUMAN, Q02535Function: ID (inhibitor of DNA binding) HLH proteins lack a basic DNA-binding domain but are able to form heterodimers with other HLH proteins, thereby inhibiting DNA binding. ID-3 inhibits the binding of E2A-containing protein complexes to muscle creatine kinase E-box enhancer. May inhibit other transcription factorsGene Wiki entry for ID3 |
Genomic Location for ID3
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the ID3 gene 
Entrez Gene cytogenetic band: 1p36.13-p36.12 Ensembl cytogenetic band: 1p36.12 HGNC cytogenetic band: 1p36.13-p36.12ID3 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 1 GeneLoc Exon Structure GeneLoc location for GC01M023756:
(about GC identifiers)
Start:
|
23,756,996 bp from pter |
End:
|
23,758,909 bp from pter |
Size:
|
1,914 bases |
Orientation:
|
minus strand |
RefSeq DNA sequence:- NC_000001.9 NT_004610.18
| Proteins for ID3
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: ID3_HUMAN, Q02535 (See
protein sequence)Recommended Name: DNA-binding protein inhibitor ID-3 Size: 119 amino acids; 12969 Da
Subunit: Interacts with COPS5 and COPS7A (By similarity). Homodimer, and heterodimer with other HLH proteins
Subcellular location: Nucleus
Secondary accessions: O75641Post-translational modifications:
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_002158.3
ENSEMBL proteins: ENSP00000363689
Human Recombinant Proteins               OriGene Purified Recombinant Human Protein: ID3 
1 Gene Ontology (GO) cellular component term (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0005634 | nucleus |
IEA | -- | About this table
Antibodies for ID3: Assays for ID3: | Protein
Domains/ Families for ID3(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry Q02535
ProtoNet protein and cluster: Q02535 1 Blocks protein family: IPB001092 Basic helix-loop-helix dimerization domain bHLH
UniProtKB/Swiss-Prot: ID3_HUMAN, Q02535Similarity: Contains 1 basic helix-loop-helix (bHLH) domain | Gene Function for ID3
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_002167
Applied Biosystems Silencer® siRNAs for ID3
Sigma-Aldrich siRNA for ID3  Sigma-Aldrich shRNA for ID3  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_002167                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_002167                                  untagged cDNA clone in CMV expression vector: NM_002167 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_002167
UniProtKB/Swiss-Prot: ID3_HUMAN, Q02535Function: ID (inhibitor of DNA binding) HLH proteins lack a basic DNA-binding domain but are able to form heterodimers with other HLH proteins, thereby inhibiting DNA binding. ID-3 inhibits the binding of E2A-containing protein complexes to muscle creatine kinase E-box enhancer. May inhibit other transcription factorsInduction: By phorbol 12-myristate 13-acetate (PMA)Genatlas biochemistry entry for ID3:inhibitor of DNA binding 3,mouse ld-3 related,expressed during early development and in adult tissues,inhibing transcription factors of the basic helix loop helix family, required for neurogenesis and angiogenesis8 MGI mutant phenotypes (inferred from 2 alleles ) (MGI details for Id3):
3 Gene Ontology (GO) molecular function terms (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0003714 | transcription corepressor activity |
TAS | 8437843 | | GO:0008134 | transcription factor binding |
IEA | -- | | GO:0019904 | protein domain specific binding |
IEA | -- | About this table | Pathways & Interactions for ID3
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
Gene Network CentralTM Interacting Genes and Proteins Network for ID3 
5/16 Interacting proteins for ID3 (ENSP000003636893) via UniProtKB, MINT, and/or STRING (see all 16
)About this table
5/10 Gene Ontology (GO) biological process terms (links to tree view) (see all 10
): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0000122 | negative regulation of transcription from RNA polymerase II promoter |
IEA | -- | | GO:0006275 | regulation of DNA replication |
IEA | -- | | GO:0007275 | multicellular organismal development |
TAS | 1628620 | | GO:0007507 | heart development |
IEA | -- | | GO:0009611 | response to wounding |
IEA | -- | About this table
|
Drugs & Compounds for ID3(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for ID3 2 Novoseek chemical compound relationships for ID3 gene
| Compound |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| oxygen |
0.00 |
2 |
19054058 (2) |
| zinc |
0.00 |
1 |
10575541 (1) |
About this table
|
Transcripts for ID3(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_002167
Sigma-Aldrich siRNA for ID3  Sigma-Aldrich shRNA for ID3  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_002167 REFSEQ mRNAs for ID3 gene: NM_002167.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_002167               OriGene GFP tagged cDNA clone in CMV expression vector: NM_002167                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_002167                                  untagged cDNA clone in CMV expression vector: NM_002167  Additional cDNA sequence: AK225965.1 AK290003.1 BC003107.1 BT006791.1 CR597388.1 CR603067.1 CR611504.1 CR612668.1 CR614670.1 CR615457.1 CR620515.1 CR623483.1 D28449.1 X66924.1 X69111.1 10 DOTS entries: DT.448517 DT.92452265 DT.100817038 DT.100817039 DT.97855621 DT.95365730 DT.95365717 DT.121403793 DT.92452272 DT.95099597 24/562 AceView cDNA sequences (see all 562
):H89353 CA420836 CR623483 AA516007 BF061101 BQ008635 BQ014563 AA583583 AI949079 AA425764 AI077534 CR612668 BU733493 CR611504 AA987439 CD671237 CR614670 N50460 BQ005231 BM739564 BE221233 BF439510 CD671238 CR597388
highest scoring ESTs for ID3:AA310279 AA525306 AA576713 AI992066 AL048518 AL697702 AL708993 AW163787 AW166245 AW328591 Unigene Cluster for ID3: Inhibitor of DNA binding 3, dominant negative helix-loop-helix protein Hs.76884 [show with all ESTs]Unigene Representative Sequence: AK225965
GeneLoc Exon Structure
1 Ensembl transcript including schematic representation: ENST00000374561
|
Expression for ID3
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| ID3 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for ID3
1 / 2 / 3 3 probe-sets matching ID3 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: AACCACTGCT
SOURCE GeneReport for Unigene cluster: Hs.76884
Expression variation in blood from EXPOLDB for ID3 UniProtKB/Swiss-Prot: ID3_HUMAN, Q02535Tissue specificity: Expressed abundantly in lung, kidney and adrenal gland, but not in adult brain |
Orthologs for ID3
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for ID3 gene from 5/6 species (see all 6
)
About this table Species with no ortholog for ID3
ENSEMBL Gene Tree for ID3 | Paralogs for ID3(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for ID3 gene
- ID12 ID22 ID42
|
SNPs/Variants for ID3(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for ID3 (up to first 250kb)
|
Disorders & Mutations for ID3
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 600277
7 Novoseek disease relationships for ID3 gene
About this table
1 PharmGKB disease relationship for ID3 geneAbout this table
Genetic Association Database: ID3 Human Genome Epidemiology Navigator: ID3 (2 documents)
|
Medical News for ID3(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for ID3 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/132 PubMed articles for ID3 gene (see all 132
):- Mutually exclusive expression of a helix-loop-helix gene and N-myc in human neuroblastomas and in normal development. (PubMed id 1628620)2, 3, 4 Ellmeier W.... Weith A. (1992)
- Structural organisation and chromosomal mapping of the human Id-3 gene. (PubMed id 7828896)1, 3, 4 Deed R.W....Norton J.D. (1994)
- The DNA sequence and biological annotation of human chromosome 1. (PubMed id 16710414)3, 4 Gregory S.G.... Bentley D.R. (2006)
- Analysis of candidate genes for prostate cancer. (PubMed id 15583422)3, 6 Burmester J.K....Catalona W.J. (2004)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- An immediate early human gene encodes an Id-like helix-loop-helix protein and is regulated by protein kinase C activation in diverse cell types. (PubMed id 8437843)3, 4 Deed R.W.... Norton J.D. (1993)
- Expression of Id2 and Id3 mRNA in human lymphocytes. (PubMed id 8632670)1, 3 Ishiguro A....Koeffler H.P. (1995)
- Estrogen-induced redox sensitive Id3 signaling controls the growth of vascular cells. (PubMed id 18281048)1, 3 Felty Q. and Porther N. (2008)
- Id3 induces a caspase-3- and -9-dependent apoptosis and mediates UVB sensitization of HPV16 E6/7 immortalized human keratinocytes. (PubMed id 16449966)1, 3 Simbulan-Rosenthal C.M....Rosenthal D.S. (2006)
- Rho/Rho-associated kinase signal regulates myogenic differentiation via myocardin-related transcription factor-A/Smad-dependent transcription of the Id3 gene. (PubMed id 18477564)1, 3 Iwasaki K....Sobue K. (2008)
|
Search for ID3
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing ID3
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing ID3
(According to HUGE)
About This Section
| -- |
Specialized Databases showing ID3(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for ID3(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for ID3:

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