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ICMT Gene

protein-coding   GIFtS: 59

GC01M006215
isoprenylcysteine carboxyl methyltransferase
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
Services    
(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
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Aliases
EC 2.1.1.100 3
HSTE14 1, 2
MGC39955 2
MST098 2
MSTP098 2
OTTHUMP00000001381 2
PCCMT 1, 2, 3
PCMT 2
PPMT 1, 2, 3
pcCMT 3
Descriptions
Isoprenylcysteine carboxylmethyltransferase 3
Prenylated protein carboxyl methyltransferase 2, 3
Prenylcysteine carboxyl methyltransferase 2, 3
isoprenylcysteine carboxyl methyltransferase 2
protein-S isoprenylcysteine O-methyltransferase 2
External Ids
HGNC: 53501
Entrez Gene: 234632
UniProtKB: O607253
Ensembl: ENSG000001162377
Search outside databases for aliases for ICMT gene

Previous GC identifers: GC01M005857 GC01M006090 GC01M005990

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

EntrezGene summary for ICMT:
This gene encodes the third of three enzymes that posttranslationally modify isoprenylated
C-terminal cysteine residues in certain proteins and target those proteins to the cell membrane.
This enzyme localizes to the endoplasmic reticulum. Alternative splicing may result in other
transcript variants, but the biological validity of those transcripts has not been determined.
[provided by RefSeq]

UniProtKB/Swiss-Prot: ICMT_HUMAN, O60725
Function: Catalyzes the post-translational methylation of isoprenylated C-terminal cysteine
residues

Gene Wiki entry for ICMT

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
About This Section

Genomic View:
UCSC Golden Path with GeneCards custom track

 Transcription factor binding sites upstream to the ICMT gene  

Entrez Gene cytogenetic band: 1p36.21   Ensembl cytogenetic band:  1p36.31   HGNC cytogenetic band: 1p36

ICMT Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 1         GeneLoc Exon Structure

GeneLoc location for GC01M006215:     (about GC identifiers)

Start:
6,203,840 bp from pter
End:
6,218,631 bp from pter
Size:
14,792 bases
Orientation:
minus strand
RefSeq DNA sequence:
NC_000001.9  NT_021937.18  
(According to 1UniProtKB, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
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UniProtKB/Swiss-Prot: ICMT_HUMAN, O60725 (See protein sequence)
Recommended Name: Protein-S-isoprenylcysteine O-methyltransferase  
Size: 284 amino acids; 31938 Da
Cofactor: Divalent cations. Probably zinc (By similarity)
Subcellular location: Endoplasmic reticulum membrane; Multi-pass membrane protein

REFSEQ proteins: NP_036537.1  

ENSEMBL proteins: 
ENSP00000354894 ENSP00000343552 


Human Recombinant Proteins 
Browse Drug Discovery Central at Invitrogen for human recombinant proteins
Browse Purified and Recombinant Proteins at Millipore
Browse Human Recombinant Proteins at Sigma-Aldrich  
Browse R&D Systems for human recombinant proteins
Browse recombinant and purified proteins available from Enzo Life Sciences
Recombinant Proteins from Abcam (CMT)
Human Recombinant Proteins from Abnova (ICMT)
                Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 

5 Gene Ontology (GO) cellular component terms (links to tree view):

GO IDQualified GO termEvidencePubMed IDs
GO:0005624 membrane fraction TAS10441503
GO:0005783 endoplasmic reticulum IDA9614111
GO:0005789 endoplasmic reticulum membrane IEA--
GO:0016020 membrane IEA--
GO:0016021 integral to membrane IEA--
About this table

Antibodies for ICMT: 
Browse Antibodies Central at Invitrogen
Millipore Mono- and Polyclonal Antibodies for the study of ICMT
Browse Antibodies at Sigma-Aldrich
Browse R&D Systems for Antibodies
Antibodies from Abcam (CMT), each with their AbpromiseSM
Monoclonal and Polyclonal Antibodies from Abnova (ICMT)
Novus Biologicals Antibody for ICMT

Assays for ICMT: 
Browse Invitrogen for biochemical assays
Browse Kits and Assays available from Millipore
Browse R&D Systems for biochemical assays
Browse biochemical assays available from Enzo Life Sciences

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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1 InterPro domain/family:
 IPR007269 ICMT_MeTrfase


   GeneDecks  ICMT for the domains selected above  
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Graphical View of Domain Structure for InterPro Entry O60725

ProtoNet protein and cluster: O60725

2 Blocks protein families:
IPB007269 Isoprenylcysteine carboxyl methyltransferase
IPB011024 Gamma-crystallin related


UniProtKB/Swiss-Prot: ICMT_HUMAN, O60725
Similarity: Belongs to the isoprenylcysteine O-methyltransferase family

(According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
About This Section

Inhib.
RNA:
Invitrogen RNAi Products for gene knock-down (ICMT)
Browse for Gene Knock-down Tools from Millipore
Abnova Chimera RNAi Products for Gene knock-down (ICMT)
               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2): NM_012405

              Applied Biosystems Silencer® siRNAs for ICMT

              Sigma-Aldrich siRNA for ICMT  
                     Sigma-Aldrich shRNA for ICMT  
                     Explore Sigma-Aldrich super-pooled esiRNAs  

Clones:Invitrogen Clones for ICMT
Browse Clones for the Expression of Recombinant Proteins Available from Millipore
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_012405
                                 Myc/DDK tagged cDNA clone in CMV expression vector: NM_012405
                                 untagged cDNA clone in CMV expression vector: NM_012405 

Primers: Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers
              OriGene genome-wide validated SYBR primer pairs: NM_012405

UniProtKB/Swiss-Prot: ICMT_HUMAN, O60725
Function: Catalyzes the post-translational methylation of isoprenylated C-terminal cysteine
residues
Catalytic activity: S-adenosyl-L-methionine + protein C-terminal S-farnesyl-L-cysteine =
S-adenosyl-L-homocysteine + protein C-terminal S-farnesyl-L-cysteine methyl ester
Enzyme Number (IUBMB): EC 2.1.1.100 

8 MGI mutant phenotypes (inferred from 3 alleles(MGI details for Icmt):

cellularembryogenesisgrowth/sizehematopoietic systemlethality-prenatal/perinatal
liver/biliary systemnervous systemnormal

4 Gene Ontology (GO) molecular function terms (links to tree view):

GO IDQualified GO termEvidencePubMed IDs
GO:0004671 protein-S-isoprenylcysteine O-methyltransferase activity IEA--
GO:0008140 cAMP response element binding protein binding IEA--
GO:0008168 methyltransferase activity IEA--
GO:0016740 transferase activity IEA--
About this table

(Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
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1 Invitrogen iPath™ Online BioAtlas - Pathway for ICMT (Maps provided by GeneGo):
 H-RAS regulation pathway

   GeneDecks  ICMT for the pathways selected above  
About GeneDecksing

3 Millipore Pathways for ICMT
 G-protein signaling K-RAS regulation pathway
 G-protein signaling N-RAS regulation pathway
 G-protein signaling H-RAS regulation pathway

   GeneDecks  ICMT for the pathways selected above  
About GeneDecksing

1 Sigma-Aldrich "Your Favorite Gene" Pathway for  ICMT  (Your Favorite Gene powered by Ingenuity) 
 Aldosterone Signaling in Epithelial Cells

   GeneDecks  ICMT for the pathways selected above  
About GeneDecksing

 Gene Network CentralTM Interacting Genes and Proteins Network for  ICMT 

  --

5/9 Gene Ontology (GO) biological process terms (links to tree view) (see all 9 ):

GO IDQualified GO termEvidencePubMed IDs
GO:0001701 in utero embryonic development IEA--
GO:0001889 liver development IEA--
GO:0006464 protein modification process TAS9614111
GO:0006481 C-terminal protein amino acid methylation TAS10441503
GO:0006612 protein targeting to membrane TAS9614111
About this table
(Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
About This Section

Browse drugs & compounds from Enzo Life Sciences
Browse Small Molecules at Sigma-Aldrich

Browse Tocris compounds for ICMT
5 Novoseek chemical compound relationships for ICMT gene
Compound   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
cysmethynil 98.00 12 17209565 (2), 15784746 (2), 16757321 (1), 19157999 (1) (see all 5)
s-adenosylhomocysteine 82.30 5 17360897 (2), 12631708 (1), 12750467 (1)
s-adenosylmethionine 70.13 4 12631708 (1), 17360897 (1), 15625008 (1)
homocysteine 52.52 3 12750467 (1), 17360897 (1)
indole 34.15 3 17209565 (3)
About this table


(GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView,
non coding RNAs according to RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from Invitrogen, Millipore, and/or Abnova,
siRNAs from Applied Biosystems, Sigma-Aldrich,
shRNA from Sigma-Aldrich, OriGene,
Tagged/untagged cDNA clones from OriGene,
Expression Assays from Applied Biosystems)
About This Section

Inhib.
RNA:
Invitrogen RNAi Products for gene knock-down (ICMT)
Browse for Gene Knock-down Tools from Millipore
Abnova Chimera RNAi Products for Gene knock-down (ICMT)
               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2): NM_012405

              Sigma-Aldrich siRNA for ICMT  
                     Sigma-Aldrich shRNA for ICMT  
                     Explore Sigma-Aldrich super-pooled esiRNAs  

Applied Biosystems Silencer® siRNAs: 

NM_012405  

REFSEQ mRNAs for ICMT gene: 

NM_012405.3   

Applied Biosystems TaqMan ® Gene Expression Assays: 

NM_012405  

              OriGene GFP tagged cDNA clone in CMV expression vector: NM_012405
                                 Myc/DDK tagged cDNA clone in CMV expression vector: NM_012405
                                 untagged cDNA clone in CMV expression vector: NM_012405 

Additional cDNA sequence: 

AF173157.1 BC028168.1 CR541671.1 CR541711.1 CR595162.1 CR605804.1 

16 DOTS entries:

DT.100790533  DT.87017640  DT.100790540  DT.86855797  DT.95345873  DT.100790531  DT.95343582  DT.100790535 
DT.121366499  DT.91771617  DT.40109201  DT.40109202  DT.86840009  DT.100029749  DT.91749368  DT.95283915 

24/374 AceView cDNA sequences (see all 374 ):

CB048275 AW779430 AA984028 BU617580 AI304898 W78108 CR541711 AI222981 
AL553748 AW169707 AW612700 BF001263 CA390765 CA429871 BU955941 BU617626 
CB160354 NM_170705 BM771396 AI244487 BQ045349 BM709703 BE740204 BU839281 

highest scoring ESTs for ICMT:

AL513958 BC028168 BI464077 BI919113 BM546276 BM564792 BP429984 BU160832 BU501528 CA390765 

Unigene Cluster for ICMT:

Isoprenylcysteine carboxyl methyltransferase
Hs.515688  [show with all ESTs]
Unigene Representative Sequence: NM_012405


GeneLoc Exon Structure

4 Alternative Splicing Database (ASD) splice patterns (SP) for ICMT

ExUns: 1 ^ 2a · 2b ^ 3 ^ 4 ^ 5 ^ 6 ^ 7a · 7b · 7c · 7d
SP1:                                                                  
SP2:                    -                                             
SP3:                    -                                             
SP4:                    -     -                                       

About this scheme

ECgene alternative splicing isoforms for ICMT

2 Ensembl transcripts including schematic representations:
ENST00000362035  ENST00000343813  
(Experimental results according to 1GeneNote and GNF BioGPS,
probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
Expression Assays from Applied Biosystems )
About This Section

ICMT expression in normal and diseased human tissues

 Applied Biosystems TaqMan ® Gene Expression Assays for ICMT

1 / 2 / 3

7 probe-sets matching ICMT gene


Affymetrix
probe-set
Array  GeneAnnot data GeneNote data GeneTide data
# genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank

41775_at2, 3 U95-A 1 1.00 1.00 1.00 1.00 AF064084 0.60 1.00 0.82 1

201609_x_at2, 3 U133-A 1 1.00 1.00 -- -- AL578502 0.40 1.00 0.76 1

201611_s_at2, 3 U133-A 1 1.00 1.00 -- -- NM_012405 0.60 1.00 0.82 1

201610_at*2, 3 U133-A NULL 0.00 0.00 -- -- AF064084 0.60 1.00 0.82 1

201609_x_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --

201611_s_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --

201610_at*2 U133Plus2 NULL 0.00 0.00 -- -- -- -- -- -- --
About this table
Data from (Publications) and GNF BioGPS
    About these images
About these images

CGAP SAGE TAG: GGTTTGGAAG

SOURCE GeneReport for Unigene cluster: Hs.515688

Expression variation in blood from EXPOLDB for ICMT

UniProtKB/Swiss-Prot: ICMT_HUMAN, O60725
Tissue specificity: Ubiquitously expressed. Expressed at higher levels in the cerebellum and
putamen than in other brain regions. Abundant expression seen in the Purkinje cells and pontine
neurons

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
About This Section


Orthologs for ICMT gene from 5/19 species (see all 19 )
Organism Gene Locus Description Human
Similarity
NCBI accessions
dog
(Canis familiaris)
ICMT1   -- isoprenylcysteine carboxyl methyltransferase 92.61(n)
97.18(a)
489628  XM_546748.2  XP_546748.1 
chimpanzee
(Pan troglodytes)
ICMT1   -- isoprenylcysteine carboxyl methyltransferase 99.53(n)
99.65(a)
469782  XM_525166.2  XP_525166.2 
rat
(Rattus norvegicus)
Icmt1   -- isoprenylcysteine carboxyl methyltransferase 91.23(n)
96.84(a)
170818  NM_133310.1  NP_579844.1 
mouse
(Mus musculus)
Icmt1, 5 45
isoprenylcysteine carboxyl methyltransferase1, 5 89.08(n)1
96.13(a)1
572951  NM_133788.11  NP_598549.11 
 AA0222885  AA3873135  (see all 23)
chicken
(Gallus gallus)
ICMT1   -- isoprenylcysteine carboxyl methyltransferase 75.15(n)
77.74(a)
419373  NM_001006298.1  NP_001006298.1 
About this table        Species with no ortholog for ICMT

ENSEMBL Gene Tree for ICMT
(Paralogs according to 1HomoloGene
and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
About This Section

  --
(According to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
About This Section


10/86 NCBI SNPs in ICMT are shown (see all 86 )
(Click for Applied Biosystems TaqMan ® Genotyping Assay)  (see all 44)
ABGenomic DataTranscription DataAllele Frequencies
SNP IDValidChr 1 posSequenceRecsAA
Chg
TypeMoreRecsAllele
freq
PopTotal
sample
More
------------
rs18023531,2
A,C,F,H6207267(-) ACACAG/AACCGC 1 -- ut31 ese39Minor allele frequency- A:0.11EA EU WA 2332
--
rs120708391,2
A,C,F,H6205649(+) GGATCC/ATTTAC 1 -- ut314Minor allele frequency- A:0.15EU EA WA 412
--
rs99703341,2
A,C6218825(+) GGAAGG/TGGTGG 1 -- ng310--------
rs22065401,2
C6220460(-) GCTACC/TTGAGG 1 -- ng310--------
rs37479761,2
H6207044(-) TACACG/AATTTG 1 -- ut31 ese35Minor allele frequency- A:0.01EA EU WA 1918
rs354652821,2
F6214657(+) TGTACC/TACGTG 1 V/V syn11Minor allele frequency- T:0.03NA 70
rs49085411,2
C,F,H6214397(+) TACCTA/GTTATT 1 -- int14Minor allele frequency- G:0.06EU EA WA 412
rs8461081,2
C,H6215979(-) TTTATA/GAAGGA 1 -- int15Minor allele frequency- G:0.00MN EU EA WA 600
rs120739321,2
F,H6216477(+) AAGGGG/ACTGtt 1 -- int14Minor allele frequency- A:0.09EU EA WA 388
--
rs8461061,2
A,C6216659(-) AATGAA/GCTGGG 1 -- int10--------
About this table

HapMap Linkage Disequilibrium images for ICMT (up to first 250kb)

(in which this Gene is Involved, According to OMIM, UniProtKB, Novoseek, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
About This Section

OMIM: 605851

4 Novoseek disease relationships for ICMT gene

Disease   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
hyperhomocysteinemia 53.43 1 17360897 (1)
necrosis 0.00 2 12631708 (1), 12006387 (1)
cancer 0.00 3 17964784 (1), 18466935 (1), 15784746 (1)
tumors 0.00 2 12631708 (1), 12006387 (1)
About this table

Human Genome Epidemiology Navigator: ICMT (1 document)

(Possibly Related Articles in Doctor's Guide)
About This Section

  --

(in PubMed. Associations of this gene to articles via 1Novoseek, 2HGNC, 3Entrez Gene, 4UniProtKB/Swiss-Prot, 5UniProtKB/TrEMBL, 6GAD, and/or 7PharmGKB)
About This Section

10/60 PubMed articles for ICMT gene (see all 60 ):
(in PubMed, OMIM, and NCBI Bookshelf)
About This Section

 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)
(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
About This Section

Entrez Gene: 23463 HGNC: 5350 AceView: ICMT Ensembl:ENSG00000116237 euGenes: HUgn23463
ECgene: ICMT H-InvDB: ICMT
(According to HUGE)
About This Section

  --
(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

  --
(Available from WIS Yeda, Salk, Tufts)
About This Section

  --
(Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
Enzo Life Sciences, and/or Tocris Bioscience)
About This Section



Products for ICMT:
 TaqMan ® Gene Expression Assays
 TaqMan ® Genotyping Assays
  Free SNP selection tool



  Invitrogen iPath Pathways  Invitrogen BLOCK-iT™ RNAi
  Invitrogen Antibodies  Invitrogen Assays
  Invitrogen Clones  Invitrogen Q-PCR Products
  Invitrogen Human Recombinant Kinases  Invitrogen Custom Antibody and Peptide Service
  Invitrogen Proteins / Assays / Screening Services  Search Invitrogen catalog for ICMT-related products

 Millipore Custom Antibody & Bulk Services
 Millipore Preclinical / Clinical Development Services
 Millipore Immunoassay Services
 Millipore Target Screening & Profiling Services


 Predesigned and custom siRNAs for ICMT Browse antibodies at Sigma-Aldrich
 Explore super-pooled esiRNAs Browse proteins at Sigma-Aldrich
 Lentivirus-delivered shRNAs for ICMT Browse small molecules at Sigma-Aldrich
 "Your Favorite Gene" Pathwaysfeedback


  
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 Recombinant & Natural Proteins  

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 Recombinant Proteins
(CMT)
 Antibodies (CMT)
 Search OriGene for ICMT
 Search Tocris compounds for ICMT




 Search www.enzolifesicences.com for proteins, assays, substrates, inhibitors & antibodies
 Antibodies for ICMT

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