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Aliases for ICE1 Gene

Aliases for ICE1 Gene

  • Interactor Of Little Elongation Complex ELL Subunit 1 2 3
  • KIAA0947 2 3 4
  • Interactor Of Little Elongator Complex ELL Subunit 1 3 4
  • Little Elongation Complex Subunit 1 3
  • HAUS8 6
  • DGT4 6
  • H 6

External Ids for ICE1 Gene

Previous HGNC Symbols for ICE1 Gene

  • KIAA0947

Summaries for ICE1 Gene

GeneCards Summary for ICE1 Gene

ICE1 (Interactor Of Little Elongation Complex ELL Subunit 1) is a Protein Coding gene.

UniProtKB/Swiss-Prot for ICE1 Gene

  • Component of the little elongation complex (LEC), a complex required to regulate small nuclear RNA (snRNA) gene transcription by RNA polymerase II and III (PubMed:22195968, PubMed:23932780). Specifically acts as a scaffold protein that promotes the LEC complex formation and recruitment and RNA polymerase II occupancy at snRNA genes in subnuclear bodies (PubMed:23932780).

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ICE1 Gene

Genomics for ICE1 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for ICE1 Gene

Start:
5,420,664 bp from pter
End:
5,490,234 bp from pter
Size:
69,571 bases
Orientation:
Plus strand

Genomic View for ICE1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ICE1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ICE1 Gene

No data available for Regulatory Elements for ICE1 Gene

Proteins for ICE1 Gene

  • Protein details for ICE1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9Y2F5-ICE1_HUMAN
    Recommended name:
    Little elongation complex subunit 1
    Protein Accession:
    Q9Y2F5
    Secondary Accessions:
    • Q68DE1
    • Q6ZT40
    • Q7L587
    • Q7Z3A9
    • Q9NTH9

    Protein attributes for ICE1 Gene

    Size:
    2266 amino acids
    Molecular mass:
    247891 Da
    Quaternary structure:
    • Component of the little elongation complex (LEC), at least composed of ELL (ELL, ELL2 or ELL3), ZC3H8, ICE1 and ICE2. Interacts (via N-terminus domain) with ELL. Interacts (via C-terminus domain) with ICE2 and ZC3H8.
    SequenceCaution:
    • Sequence=BAA76791.3; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305}; Sequence=BAC86755.1; Type=Miscellaneous discrepancy; Note=Aberrant splicing.; Evidence={ECO:0000305}; Sequence=CAB70661.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=CAB70661.1; Type=Erroneous termination; Positions=2051; Note=Translated as Gln.; Evidence={ECO:0000305};

neXtProt entry for ICE1 Gene

Proteomics data for ICE1 Gene at MOPED

Post-translational modifications for ICE1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for ICE1 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for ICE1 Gene

Domains for ICE1 Gene

Protein Domains for ICE1 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

Q9Y2F5

UniProtKB/Swiss-Prot:

ICE1_HUMAN :
  • Q9Y2F5
Domain:
  • The N-termimus domain is necessary and sufficient for its targeting to subnuclear cajal and histone locus bodies.
Family:
  • Belongs to the ICE1 family.
genes like me logo Genes that share domains with ICE1: view

No data available for Gene Families and Suggested Antigen Peptide Sequences for ICE1 Gene

Function for ICE1 Gene

Molecular function for ICE1 Gene

UniProtKB/Swiss-Prot Function: Component of the little elongation complex (LEC), a complex required to regulate small nuclear RNA (snRNA) gene transcription by RNA polymerase II and III (PubMed:22195968, PubMed:23932780). Specifically acts as a scaffold protein that promotes the LEC complex formation and recruitment and RNA polymerase II occupancy at snRNA genes in subnuclear bodies (PubMed:23932780).

Gene Ontology (GO) - Molecular Function for ICE1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005319 lipid transporter activity --
GO:0005515 protein binding IPI 22195968
GO:0042803 protein homodimerization activity TAS 23932780
genes like me logo Genes that share ontologies with ICE1: view

miRNA for ICE1 Gene

miRTarBase miRNAs that target ICE1

No data available for Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for ICE1 Gene

Localization for ICE1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ICE1 Gene

Nucleus. Nucleus, Cajal body. Note=Colocalizes with COIL in subnuclear Cajal and histone locus bodies. Associates to transcriptionally active chromatin at snRNA genes.

Gene Ontology (GO) - Cellular Components for ICE1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008023 transcription elongation factor complex IDA 23932780
GO:0015030 Cajal body IDA 22195968
GO:0035327 transcriptionally active chromatin IDA 22195968
GO:0035363 histone locus body IDA 23932780
genes like me logo Genes that share ontologies with ICE1: view

No data available for Subcellular locations from COMPARTMENTS for ICE1 Gene

Pathways for ICE1 Gene

SuperPathways for ICE1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ICE1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006869 lipid transport --
GO:0031334 positive regulation of protein complex assembly IMP 23932780
GO:0042795 snRNA transcription from RNA polymerase II promoter IMP 22195968
GO:0042796 snRNA transcription from RNA polymerase III promoter IMP 23932780
GO:0045945 positive regulation of transcription from RNA polymerase III promoter IMP 23932780
genes like me logo Genes that share ontologies with ICE1: view

No data available for Pathways by source for ICE1 Gene

Transcripts for ICE1 Gene

mRNA/cDNA for ICE1 Gene

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for ICE1

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for ICE1
  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for ICE1 Gene

No ASD Table

Relevant External Links for ICE1 Gene

GeneLoc Exon Structure for
ICE1
ECgene alternative splicing isoforms for
ICE1

Expression for ICE1 Gene

mRNA expression in normal human tissues for ICE1 Gene

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for ICE1 Gene

genes like me logo Genes that share expressions with ICE1: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for ICE1 Gene

Orthologs for ICE1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for ICE1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia KIAA0947 35
  • 98.98 (n)
  • 98.55 (a)
KIAA0947 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia KIAA0947 35
  • 68.09 (n)
  • 62.4 (a)
KIAA0947 36
  • 62 (a)
OneToOne
dog
(Canis familiaris)
Mammalia KIAA0947 35
  • 77.26 (n)
  • 70.6 (a)
KIAA0947 36
  • 77 (a)
OneToOne
mouse
(Mus musculus)
Mammalia BC018507 35
  • 71.74 (n)
  • 62.85 (a)
BC018507 16
BC018507 36
  • 62 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia KIAA0947 36
  • 44 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia KIAA0947 36
  • 34 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia RGD1309747 35
  • 71.55 (n)
  • 62.8 (a)
chicken
(Gallus gallus)
Aves -- 36
  • 55 (a)
OneToMany
-- 36
  • 61 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia KIAA0947 36
  • 62 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii KIAA0947 (2 of 2) 36
  • 28 (a)
OneToMany
kiaa0947l 36
  • 28 (a)
OneToMany
Species with no ortholog for ICE1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for ICE1 Gene

ENSEMBL:
Gene Tree for ICE1 (if available)
TreeFam:
Gene Tree for ICE1 (if available)

Paralogs for ICE1 Gene

No data available for Paralogs for ICE1 Gene

Variants for ICE1 Gene

Sequence variations from dbSNP and Humsavar for ICE1 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type MAF
rs728079 -- 5,431,980(-) AAGGA(C/T)GCAGA intron-variant
rs747515 -- 5,489,787(+) CTGCT(A/C)TCTTT utr-variant-3-prime
rs999239 -- 5,476,473(-) aaacc(G/T)cttta intron-variant
rs1004263 -- 5,476,563(-) CATGA(C/T)TGAAA intron-variant
rs1043195 -- 5,490,135(+) AACTC(A/C)CCATG utr-variant-3-prime

Relevant External Links for ICE1 Gene

HapMap Linkage Disequilibrium report
ICE1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for ICE1 Gene

Disorders for ICE1 Gene

No disorders were found for ICE1 Gene.

No data available for UniProtKB/Swiss-Prot for ICE1 Gene

Publications for ICE1 Gene

  1. The little elongation complex functions at initiation and elongation phases of snRNA gene transcription. (PMID: 23932780) Hu D. … Shilatifard A. (Mol. Cell 2013) 2 3 4
  2. Prediction of the coding sequences of unidentified human genes. XIII. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro. (PMID: 10231032) Nagase T. … Ohara O. (DNA Res. 1999) 2 3 4
  3. The little elongation complex regulates small nuclear RNA transcription. (PMID: 22195968) Smith E.R. … Shilatifard A. (Mol. Cell 2011) 3 4
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  5. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3

Products for ICE1 Gene

Sources for ICE1 Gene

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