ICAM4 Gene
protein-coding GIFtS : 57
GC19P010258
intercellular adhesion molecule 4 (Landsteiner-Wiener blood group) (Previous names: intercellular adhesion molecule 4, Landsteiner-Wiener blood group, Landsteiner-Wiener blood group, intercellular adhesion molecule 4 (LW blood group) )Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database (Previous symbol: LW )
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Aliases & Descriptions for ICAM4
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases CD242 1 , 2 ICAM-4 3 LW 2 , 3
Descriptions CD242 antigen 2 , 3 LW blood group protein 3 Landsteiner-Wiener blood group 1 Landsteiner-Wiener blood group antigen a 2 Landsteiner-Wiener blood group glycoprotein 2 , 3 intercellular adhesion molecule 4 2 intercellular adhesion molecule 4 (LW blood group) 1 , 2 intercellular adhesion molecule 4 (Landsteiner-Wiener blood group) 2 intercellular adhesion molecule 4, Landsteiner-Wiener blood group 1
Search outside databases for aliases for ICAM4 genePrevious GC identifers: GC19P010519 GC19P010620 GC19P010242
Summaries for ICAM4 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for ICAM4 : This gene encodes the Landsteiner-Wiener (LW) blood group antigen(s) that belongs to theimmunoglobulin (Ig) superfamily, and that shares similarity with the intercellular adhesionmolecule (ICAM) protein family. This ICAM protein contains 2 Ig-like C2-type domains and binds tothe leukocyte adhesion LFA-1 protein. The molecular basis of the LW(A)/LW(B) blood group antigensis a single aa variation at position 100; Gln-100 UniProtKB/Swiss-Prot: ICAM4_HUMAN, Q14773 Function : ICAM proteins are ligands for the leukocyte adhesion protein LFA-1 (integrinalpha-L/beta-2). ICAM4 is also a ligand for alpha-4/beta-1 and alpha-V integrins
Genomic Location for ICAM4
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
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Ensembl ,
Transcription factor binding sites according to
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the ICAM4 gene Entrez Gene cytogenetic band: 19p13.2-cen Ensembl cytogenetic band: 19p13.2 HGNC cytogenetic band: 19p13.2-cen ICAM4 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 19 GeneLoc Exon Structure
GeneLoc location for GC19P010258:
(about GC identifiers )
Start:
10,258,650 bp from pter
End:
10,260,198 bp from pter
Size:
1,549 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000019.8 NT_011295.10 Proteins for ICAM4
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
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Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
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Novus Biologicals )
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UniProtKB/Swiss-Prot: ICAM4_HUMAN, Q14773 (See
protein sequence )Recommended Name: Intercellular adhesion molecule 4 precursor Size : 271 amino acids; 29265 Da
Subcellular location : Isoform Long: Cell membrane; Single-pass type I membrane protein
Subcellular location : Isoform Short: Secreted
Secondary accessions : A0M8X2 Q14771 Q14772 Q16375Alternative splicing : 2 isoforms : Q14773-1 Q14773-2
Post-translational modifications:
N- and O-glycosylated1
REFSEQ proteins (3 alternative transcripts):
NP_001034221.1 NP_001535.1 NP_071772.1 ENSEMBL proteins: ENSP00000342114 ENSP00000370147 ENSP00000377320 Human Recombinant Proteins               OriGene Purified Recombinant Human Protein: ICAM4 3 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for ICAM4: Assays for ICAM4:
Protein
Domains/ Families for ICAM4(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry Q14773 ProtoNet protein and cluster: Q14773
2 Blocks protein families : IPB003987 Intercellular adhesion molecule/vascular cell adhesion molecule-1 signature IPB013768 Intercellular adhesion molecule UniProtKB/Swiss-Prot: ICAM4_HUMAN, Q14773 Similarity : Belongs to the immunoglobulin superfamily. ICAM familySimilarity : Contains 2 Ig-like C2-type (immunoglobulin-like) domains
Gene Function for ICAM4
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
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Millipore ,
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Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 4 ): NM_001039132 Applied Biosystems Silencer ® siRNAs for ICAM4 Sigma-Aldrich siRNA and siRNA Panels for ICAM4 Sigma-Aldrich shRNA for ICAM4 Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 3 ): NM_001039132                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 3 ): NM_001039132                                  untagged cDNA clones in CMV expression vector (see all 5 ): BC000046  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_001039132 UniProtKB/Swiss-Prot: ICAM4_HUMAN, Q14773 Function : ICAM proteins are ligands for the leukocyte adhesion protein LFA-1 (integrinalpha-L/beta-2). ICAM4 is also a ligand for alpha-4/beta-1 and alpha-V integrins
Genatlas biochemistry entry for ICAM4 :adhesion molecule,intercellular 4
1 MGI mutant phenotype (inferred from 1 allele ) (MGI details for Icam4) :2 Gene Ontology (GO) molecular function terms (links to tree view) :
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Pathways & Interactions for ICAM4
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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Gene Network CentralTM Interacting Genes and Proteins Network for ICAM4 5/14 Interacting proteins for ICAM4 (ENSP00000342114 3 ) via UniProtKB, MINT, and/or STRING (see all 14
)About this table 1 Gene Ontology (GO) biological process term (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0016337 cell-cell adhesion
IEA --
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Drugs & Compounds for ICAM4 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
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Novoseek and Drugs according to
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PharmGKB )
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Transcripts for ICAM4(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
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shRNA from
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 4 ): NM_001039132 Sigma-Aldrich siRNA and siRNA Panels for ICAM4 Sigma-Aldrich shRNA for ICAM4 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_001039132 NM_001544 NM_022377
REFSEQ mRNAs for ICAM4 gene (3 alternative transcripts): NM_001039132.1 NM_001544.3 NM_022377.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001039132 NM_001544 NM_022377
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 3 ): NM_001039132                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 3 ): NM_001039132                                  untagged cDNA clones in CMV expression vector (see all 5 ): BC000046  
Additional cDNA sequence: BC000046.2 BC029364.1 BT009816.1 L27670.1 L27671.1
3 DOTS entries : DT.405584 DT.92418895 DT.102822076
24/282 AceView cDNA sequences (see all 282
):BP346334 BM855025 BM473834 AL701065 AW069267 BX360248 BU192598 BC015969 T28374 BI823891 CB265238 AI753618 BQ683708 AI753027 NM_022377 AA306799 CB529024 BF431004 CB529704 BQ961824 CK429562 BC029364 BQ962120 CA309669
highest scoring ESTs for ICAM4 :BC000046 BC029364 BE314619 BF868352 BT009816 L27670 L27671 AI821753 BE278826 BG496630
Unigene Cluster for ICAM4: Intercellular adhesion molecule 4 (Landsteiner-Wiener blood group) Hs.706750 [show with all ESTs ] Unigene Representative Sequence: NM_022377 GeneLoc Exon Structure 2 Alternative Splicing Database (ASD) splice patterns (SP) for ICAM4 ExUns: 1a · 1b ^ 2a · 2b ^ 3a · 3b SP1 :     -         SP2 :            
About this scheme ECgene alternative splicing isoforms for ICAM4 3 Ensembl transcripts including schematic representations : ENST00000340992
ENST00000380770
ENST00000393717
Expression for ICAM4
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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ICAM4 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for ICAM4 1 / 2 / 3
3 probe-sets matching ICAM4 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: GTGGCTGACGSOURCE GeneReport for Unigene cluster: Hs.706750 Expression variation in blood from EXPOLDB for ICAM4
UniProtKB/Swiss-Prot: ICAM4_HUMAN, Q14773 Tissue specificity : Erythrocytes
Orthologs for ICAM4
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for ICAM4 gene from 4 species
About this table Species with no ortholog for ICAM4 ENSEMBL Gene Tree for ICAM4 Paralogs for ICAM4 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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SNPs/Variants for ICAM4 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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UniProtKB/Swiss-Prot: ICAM4_HUMAN, Q14773 Polymorphism : Responsible for the Landsteiner-Wiener blood group system. The molecular basis of theLW(A)=LW5/LW(B)=LW7 blood group antigens is a single variation in position 100; Gln-100corresponds to LW(A) and Arg-100 to LW(B)
The following additional 85 SNP(s) have been
found in Applied Biosystems data source:(Click
for
Applied Biosystems TaqMan ® Genotyping Assay ) HapMap Linkage Disequilibrium images for ICAM4 (up to first 250kb)
Disorders & Mutations for ICAM4
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 111250 Blood Group Antigen Gene Mutation Database (BGMUT) LW blood group system Human Gene Mutation Database : ICAM4 Human Genome Epidemiology Navigator: ICAM4 (2 documents)
Medical News for ICAM4 (Possibly Related Articles in
Doctor's Guide )
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Publications for ICAM4 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/24 PubMed articles for ICAM4 gene (see all 24
): Characterization of the gene encoding the human LW blood group protein in LW+ and LW- phenotypes. (PubMed id 8639917) 1, 2, 3, 4 Hermand P.... Bailly P. (1996) The LW blood group glycoprotein is homologous to intercellular adhesion molecules. (PubMed id 8202485) 1, 3, 4 Bailly P.... Cartron J.-P. (1994) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) Intercellular adhesion molecule-4 binds alpha(4)beta(1) and alpha(V)- family integrins through novel integrin-binding mechanisms. (PubMed id 11435317) 3, 4 Spring F.A.... Anstee D.J. (2001) Molecular basis and expression of the LWa/LWb blood group polymorphism. (PubMed id 7632968) 3, 4 Hermand P....Bailly P. (1995) Linkage of the LW blood group locus with the complement C3 and Lutheran blood group loci. (PubMed id 6431896) 2, 3 Sistonen P. (1984) Binding sites of leukocyte beta 2 integrins (LFA-1, Mac-1) on the human ICAM-4/LW blood group protein. (PubMed id 10846180) 1, 3 Hermand P....Bailly P. (2000) Epinephrine acts through erythroid signaling pathways to activate sickle cell adhesion to endothelium via LW-alphavbeta3 interactions. (PubMed id 15308566) 1, 3 Zennadi R....Telen M.J. (2004) Red-cell ICAM-4 is a ligand for the monocyte/macrophage integrin CD11c/CD18: characterization of the binding sites on ICAM-4. (PubMed id 16985175) 3 Ihanus E....Gahmberg C.G. (2007) Epinephrine-induced activation of LW-mediated sickle cell adhesion and vaso-occlusion in vivo. (PubMed id 17609430) 3 Zennadi R....Telen M.J. (2007)
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Genome Databases showing ICAM4
(According to
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euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing ICAM4
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Specialized Databases showing ICAM4 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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Name Description
dbRBC/BGMUT http://www.ncbi.nlm.nih.gov/gv/mhc/xslcgi.cgi?cmd=bgmut/systems_info&system=lw SeattleSNPs http://pga.gs.washington.edu/data/icam4/
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Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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