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Aliases & Descriptions for ICAM3
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| CD50 1, 2 | | CDW50 1, 2, 5 | | CDw50 3 | | ICAM-3 3 | | ICAM-R 1, 2, 3 |
| | | Descriptions |
|---|
| CD50 antigen 3 | | intercellular adhesion molecule 3 2 | | intercellular adhesion molecule-3 2 |
|
| | Search outside databases for aliases for ICAM3 genePrevious GC identifers: GC19M010565 GC19M010667 GC19M010289 |
Summaries for ICAM3(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for ICAM3: The protein encoded by this gene is a member of the intercellular adhesion molecule (ICAM) family. All ICAM proteins are type I transmembrane glycoproteins, contain 2-9 immunoglobulin-like C2-type domains, and bind to the leukocyte adhesion LFA-1 protein. This protein is constitutively and abundantly expressed by all leucocytes and may be the most important ligand for LFA-1 in the initiation of the immune response. It functions not only as an adhesion molecule, but also as a potent signalling molecule. [provided by RefSeq] UniProtKB/Swiss-Prot: ICAM3_HUMAN, P32942Function: ICAM proteins are ligands for the leukocyte adhesion protein LFA-1 (integrin alpha-L/beta-2). ICAM3 is also a ligand for integrin alpha-D/beta-2Gene Wiki entry for ICAM3 |
Genomic Location for ICAM3
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the ICAM3 gene 
Entrez Gene cytogenetic band: 19p13.3-p13.2 Ensembl cytogenetic band: 19p13.2 HGNC cytogenetic band: 19p13.3-p13.2ICAM3 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 19 GeneLoc Exon Structure GeneLoc location for GC19M010305:
(about GC identifiers)
Start:
|
10,305,452 bp from pter |
End:
|
10,311,344 bp from pter |
Size:
|
5,893 bases |
Orientation:
|
minus strand |
RefSeq DNA sequence:- NC_000019.8 NT_011295.10
| Proteins for ICAM3
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: ICAM3_HUMAN, P32942 (See
protein sequence)Recommended Name: Intercellular adhesion molecule 3 precursor Size: 547 amino acids; 59541 Da
Subcellular location: Membrane; Single-pass type I membrane protein
PDB structures from and Proteopedia :1T0P (3D)
 
Secondary accessions: Q6PD68Post-translational modifications:
Upon stimulation by a physiologic stimuli becomes rapidly and transiently phosphorylated on serine residues1
N-glycosylated; glycans consist of a mixture of tri- and tetra-antennary complex-type chains and high-mannose chains1
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_002153.2
ENSEMBL proteins: ENSP00000160262
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
2 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for ICAM3: Assays for ICAM3: | Protein
Domains/ Families for ICAM3(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P32942
ProtoNet protein and cluster: P32942 4 Blocks protein families: IPB003599 Immunoglobulin subtype IPB003987 Intercellular adhesion molecule/vascular cell adhesion molecule-1 signature IPB003988 Intercellular adhesion molecule (ICAM) family signature IPB013768 Intercellular adhesion molecule
UniProtKB/Swiss-Prot: ICAM3_HUMAN, P32942Similarity: Belongs to the immunoglobulin superfamily. ICAM familySimilarity: Contains 5 Ig-like C2-type (immunoglobulin-like) domains | Gene Function for ICAM3
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_002162
Applied Biosystems Silencer® siRNAs for ICAM3
Sigma-Aldrich siRNA and siRNA Panels for ICAM3  Sigma-Aldrich shRNA Panels and shRNA for ICAM3  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_002162                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_002162                                  untagged cDNA clones in CMV expression vector (see all 2): NM_002162 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_002162
UniProtKB/Swiss-Prot: ICAM3_HUMAN, P32942Function: ICAM proteins are ligands for the leukocyte adhesion protein LFA-1 (integrin alpha-L/beta-2). ICAM3 is also a ligand for integrin alpha-D/beta-2Genatlas biochemistry entry for ICAM3:adhesion molecule intercellular 3,ligand for LFA1,counterreceptor,expressed only on the leukocytes interacting with moesin and promoting its redistribution to the uropod of T lymphocytes during cell polarization,Ig superfamily1 Gene Ontology (GO) molecular function term (links to tree view): About this table | Pathways & Interactions for ICAM3
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
1 Sigma-Aldrich "Your Favorite Gene" Pathway for ICAM3 (Your Favorite Gene powered by Ingenuity) 
Gene Network CentralTM Interacting Genes and Proteins Network for ICAM3 
5/45 Interacting proteins for ICAM3 (P329421, 2 ENSP000001602623) via UniProtKB, MINT, and/or STRING (see all 45
)About this table
1 Gene Ontology (GO) biological process term (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0016337 | cell-cell adhesion |
IEA | -- | About this table
|
Drugs & Compounds for ICAM3(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for ICAM3 7 Novoseek chemical compound relationships for ICAM3 gene
About this table
2 PharmGKB drug compound relationships for ICAM3 geneAbout this table
|
Transcripts for ICAM3(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_002162
Sigma-Aldrich siRNA and siRNA Panels for ICAM3  Sigma-Aldrich shRNA Panels and shRNA for ICAM3  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_002162 REFSEQ mRNAs for ICAM3 gene: NM_002162.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_002162               OriGene GFP tagged cDNA clone in CMV expression vector: NM_002162                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_002162                                  untagged cDNA clones in CMV expression vector (see all 2): NM_002162  Additional cDNA sequence: AF340060.1 AF340061.1 AK226023.1 AK301071.1 AK309643.1 AK312826.1 BC034409.1 BC040123.1 BC046121.1 BC058903.1 CR590853.1 CR594982.1 CR623746.1 S50015.1 X69711.1 X69819.1 8 DOTS entries: DT.453621 DT.40250724 DT.100786949 DT.99993152 DT.95278145 DT.92049816 DT.92424245 DT.100786951 24/529 AceView cDNA sequences (see all 529
):BF724596 BM832369 BM926198 BQ011343 BQ233371 BQ548716 BQ430683 BC034409 C01301 BC058903 BI818565 BX282435 AI498122 AW205690 BQ709668 CD557260 BU859475 BM551727 BE702352 AW631239 BC037428 BX353652 BM738616 AW245043
highest scoring ESTs for ICAM3:X69819 AL531288 AL709279 BC034409 BC040123 BC046121 BC058903 BE270839 BG258576 BG341069 Unigene Cluster for ICAM3: Intercellular adhesion molecule 3 Hs.654563 [show with all ESTs]Unigene Representative Sequence: BC046121
GeneLoc Exon Structure
5/6 Alternative Splicing Database (ASD) splice patterns (SP) for ICAM3 (see all 6
)
| ExUns: | 1a | · | 1b | · | 1c | ^ | 2a | · | 2b | · | 2c | ^ | 3 | ^ | 4a | · | 4b | ^ | 5a | · | 5b | · | 5c | ^ | 6 | ^ | 7a | · | 7b | · | 7c | |
| SP1: | |   | |   | |   | - |   | |   | |   | |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |
| SP2: | |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP3: | |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP4: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP5: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for ICAM3
1 Ensembl transcript including schematic representation: ENST00000160262
|
Expression for ICAM3
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| ICAM3 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for ICAM3
1 / 2 / 3 3 probe-sets matching ICAM3 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: TTAGGGAGGA
SOURCE GeneReport for Unigene cluster: Hs.654563
Expression variation in blood from EXPOLDB for ICAM3 |
Orthologs for ICAM3
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for ICAM3 gene from 2 species
About this table Species with no ortholog for ICAM3
ENSEMBL Gene Tree for ICAM3 | Paralogs for ICAM3(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for ICAM3 gene
- ICAM52 ICAM22 ICAM12
|
SNPs/Variants for ICAM3(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for ICAM3 (up to first 250kb)
|
Disorders & Mutations for ICAM3
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 146631
10/21 Novoseek disease relationships for ICAM3 gene (see all 21
)
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| immunodeficiency |
37.66 |
8 |
11799181 (1), 12477827 (1), 14970226 (1), 16641270 (1) (see all 8) |
| inflammation |
35.37 |
3 |
17701178 (1), 8579109 (1), 16792588 (1) |
| asthma allergic |
24.76 |
1 |
11964048 (1) |
| colitis ulcerative |
21.54 |
3 |
9471026 (1), 9473377 (1), 10931137 (1) |
| autoimmune response |
17.47 |
1 |
7523142 (1) |
| dermatitis atopic |
11.13 |
5 |
8547030 (2) |
| psoriasis |
7.18 |
7 |
8547030 (2), 8721479 (1), 12854881 (1) |
| tumors |
5.47 |
5 |
8946680 (3), 15880373 (1), 8579109 (1) |
| inflammatory bowel diseases |
2.68 |
1 |
10931137 (1) |
| hiv infections |
1.48 |
1 |
17530994 (1) |
About this table
1 PharmGKB disease relationship for ICAM3 geneAbout this table
Human Genome Epidemiology Navigator: ICAM3 (1 document)
|
Medical News for ICAM3(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for ICAM3 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/209 PubMed articles for ICAM3 gene (see all 209
):- Cloning and characterization of a new intercellular adhesion molecule ICAM-R. (PubMed id 1448174)1, 2, 3, 4 Vazeux R.... Gallatin W.M. (1992)
- Molecular cloning of ICAM-3, a third ligand for LFA-1, constitutively expressed on resting leukocytes. (PubMed id 1448173)1, 3, 4 Fawcett J.... Simmons D.L. (1992)
- Structural study of N-linked oligosaccharides of human intercellular adhesion molecule-3 (CD50). (PubMed id 11179968)1, 3, 4 Funatsu O....Furukawa K. (2001)
- Human plasma N-glycoproteome analysis by immunoaffinity subtraction, hydrazide chemistry, and mass spectrometry. (PubMed id 16335952)3, 4 Liu T.... Smith R.D. (2005)
- Cloning and expression of intercellular adhesion molecule 3 reveals strong homology to other immunoglobulin family counter-receptors for lymphocyte function-associated antigen 1. (PubMed id 8459213)3, 4 de Fougerolles A.R.... Springer T.A. (1993)
- CDw50 and ICAM-3: two names for the same molecule. (PubMed id 8325327)3, 4 Juan M....Springer T.A. (1993)
- DC-SIGN binds ICAM-3 isolated from peripheral human leukocytes through Lewis x residues. (PubMed id 17145745)1, 3 Bogoevska V....Wagener C. (2007)
- A novel serine-rich motif in the intercellular adhesion molecule 3 is critical for its ezrin/radixin/moesin-directed subcellular targeting. (PubMed id 11784723)1, 3 Serrador J.M....Sanchez-Madrid F. (2002)
- ICAM-3 activation modulates cell-cell contacts of human bone marrow endothelial cells. (PubMed id 14726630)1, 3 van Buul J.D....Hordijk P.L. (2004)
- Increased expression of ICAM-3 is associated with radiation resistance in cervical cancer. (PubMed id 15880373)1, 3 Chung Y.M....Bae D.S. (2005)
|
Search for ICAM3
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing ICAM3
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing ICAM3
(According to HUGE)
About This Section
| -- |
Specialized Databases showing ICAM3(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| Name | Description |
| ATLAS Chromosomes in Cancer entry for ICAM3 | Genetics and Cytogenetics in Oncology and Haematology | | R&D Systems' cytokine source book: ICAM-3 | http://www.rndsystems.com/molecule_detail.aspx?m=1589 | | Functional Glycomics Gateway - Glycan Binding | http://www.functionalglycomics.org/glycomics/GBPServlet?&operationType=view&cbpId=cbp_hum_Itlect_263 |
|
| | | About This Section
| --
| Services for ICAM3(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for ICAM3:

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