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Aliases & Descriptions for ICAM2
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases CD102 1 , 2 ICAM-2 3
Descriptions CD102 antigen 3 intercellular adhesion molecule 2 2
Search outside databases for aliases for ICAM2 genePrevious GC identifers: GC17M061717 GC17M064506 GC17M062420 GC17M062553
Summaries for ICAM2 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for ICAM2 : The protein encoded by this gene is a member of the intercellular adhesion molecule (ICAM) family.All ICAM proteins are type I transmembrane glycoproteins, contain 2-9 immunoglobulin-like C2-typedomains, and bind to the leukocyte adhesion LFA-1 protein. This protein may play a role inlymphocyte recirculation by blocking LFA-1-dependent cell adhesion. It mediates adhesiveinteractions important for antigen-specific immune response, NK-cell mediated clearance,lymphocyte recirculation, and other cellular interactions important for immune response andsurveillance. Several transcript variants encoding the same protein have been found for this gene.[provided by RefSeq] UniProtKB/Swiss-Prot: ICAM2_HUMAN, P13598 Function : ICAM proteins are ligands for the leukocyte adhesion protein LFA-1 (integrinalpha-L/beta-2). ICAM2 may play a role in lymphocyte recirculation by blocking LFA-1-dependentcell adhesion. It mediates adhesive interactions important for antigen-specific immune response,NK-cell mediated clearance, lymphocyte recirculation, and other cellular interactions importantfor immune response and surveillance
Gene Wiki entry for ICAM2
Genomic Location for ICAM2
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the ICAM2 gene Entrez Gene cytogenetic band: 17q23-q25 Ensembl cytogenetic band: 17q23.3 HGNC cytogenetic band: 17q23-q25 ICAM2 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 17 GeneLoc Exon Structure
GeneLoc location for GC17M059433:
(about GC identifiers )
Start:
59,433,687 bp from pter
End:
59,451,726 bp from pter
Size:
18,040 bases
Orientation:
minus strand
RefSeq DNA sequence: NC_000017.9 NT_010783.14 Proteins for ICAM2
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: ICAM2_HUMAN, P13598 (See
protein sequence )Recommended Name: Intercellular adhesion molecule 2 precursor Size : 275 amino acids; 30654 Da
Subcellular location : Membrane; Single-pass type I membrane protein
PDB structures from and Proteopedia : 1ZXQ (3D)
 
Secondary accessions : Q14600
Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (5 alternative transcripts):
NP_000864.2 NP_001093256.1 NP_001093257.1 NP_001093258.1 NP_001093259.1 ENSEMBL proteins: ENSP00000225760 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 2 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for ICAM2: Invitrogen Antibodies for ICAM2 Millipore Mono- and Polyclonal Antibodies for the study of ICAM2 Sigma-Aldrich Antibodies for ICAM2 R&D Systems Antibodies for ICAM2 (ICAM-2/CD102) Antibodies from Abcam (ICAM2 ), each with their Abpromise SM Monoclonal and Polyclonal Antibodies from Abnova (ICAM2 ) Novus Biologicals Antibodies for ICAM2
Assays for ICAM2:
Protein
Domains/ Families for ICAM2(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P13598 ProtoNet protein and cluster: P13598
3 Blocks protein families : IPB003987 Intercellular adhesion molecule/vascular cell adhesion molecule-1 signature IPB003988 Intercellular adhesion molecule (ICAM) family signature IPB013768 Intercellular adhesion molecule UniProtKB/Swiss-Prot: ICAM2_HUMAN, P13598 Similarity : Belongs to the immunoglobulin superfamily. ICAM familySimilarity : Contains 2 Ig-like C2-type (immunoglobulin-like) domains
Gene Function for ICAM2
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 5 ): NM_001099786 Applied Biosystems Silencer ® siRNAs for ICAM2 Sigma-Aldrich siRNA and siRNA Panels for ICAM2 Sigma-Aldrich shRNA Panels and shRNA for ICAM2 Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 5 ): NM_000873                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 5 ): NM_000873                                  untagged cDNA clones in CMV expression vector (see all 5 ): NM_000873  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_001099788 UniProtKB/Swiss-Prot: ICAM2_HUMAN, P13598 Function : ICAM proteins are ligands for the leukocyte adhesion protein LFA-1 (integrinalpha-L/beta-2). ICAM2 may play a role in lymphocyte recirculation by blocking LFA-1-dependentcell adhesion. It mediates adhesive interactions important for antigen-specific immune response,NK-cell mediated clearance, lymphocyte recirculation, and other cellular interactions importantfor immune response and surveillance
Genatlas biochemistry entry for ICAM2 :adhesion molecule,intercellular 2,ligand for (LFA1,CD11A/CD18),expressed in restinglymphocyte,monocyte,platelet,vascular endothelium,redistributed by ezrin (VIL2) as a target forkiller cells,also interacting with ICAM1 and VIL2 in microvillar projections,underphosphatidylinositol-4,5 biphosphate regulation,Ig superfamily
3 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Icam2) :2 Gene Ontology (GO) molecular function terms (links to tree view) :
About this table
Pathways & Interactions for ICAM2
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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Gene Network CentralTM Interacting Genes and Proteins Network for ICAM2 5/41 Interacting proteins for ICAM2 (ENSP00000225760 3 ) via UniProtKB, MINT, and/or STRING (see all 41
)About this table 1 Gene Ontology (GO) biological process term (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0016337 cell-cell adhesion
IEA --
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Drugs & Compounds for ICAM2 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for ICAM2 3 Novoseek chemical compound relationships for ICAM2 gene
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Transcripts for ICAM2(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
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siRNAs from Applied Biosystems ,
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 5 ): NM_001099786 Sigma-Aldrich siRNA and siRNA Panels for ICAM2 Sigma-Aldrich shRNA Panels and shRNA for ICAM2 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_000873 NM_001099786 NM_001099787 NM_001099788 NM_001099789
REFSEQ mRNAs for ICAM2 gene (5 alternative transcripts): NM_000873.3 NM_001099786.1 NM_001099787.1 NM_001099788.1 NM_001099789.1
Applied Biosystems TaqMan ® Gene Expression Assays: NM_000873 NM_001099786 NM_001099787 NM_001099788 NM_001099789
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 5 ): NM_000873                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 5 ): NM_000873                                  untagged cDNA clones in CMV expression vector (see all 5 ): NM_000873  
Additional cDNA sequence: AB209878.1 AF340052.1 AF340053.1 AK223219.1 AK293110.1 AK295382.1 AK309953.1 BC003097.1 CR541812.1 CR541834.1 CR596124.1 CR599245.1 CR599573.1 CR599930.1 CR600674.1 CR615927.1 CR621141.1 X15606.1
11 DOTS entries : DT.455933 DT.91995331 DT.101984915 DT.100795618 DT.101984913 DT.95280474 DT.92425823 DT.92425828 DT.97775460 DT.95249996 DT.97846486
24/218 AceView cDNA sequences (see all 218
):BC003097 BE261894 CA419028 BX355347 CR541812 CR541834 AI167668 CB530017 BU181068 BF794588 BX444203 BU633462 CR621141 BM918998 T27750 BX378501 BE269543 BQ001423 BX363874 AI376349 BM852307 CR599573 CD014037 BM708260
highest scoring ESTs for ICAM2 :X15606 AA062949 AA186978 BC003097 BE260730 BF206397 BF206987 BI199286 BI771250 BM547059
Unigene Cluster for ICAM2: Intercellular adhesion molecule 2 Hs.431460 [show with all ESTs ] Unigene Representative Sequence: BQ214437 GeneLoc Exon Structure 4 Alternative Splicing Database (ASD) splice patterns (SP) for ICAM2 ExUns: 1 ^ 2a · 2b · 2c · 2d ^ 3 ^ 4a · 4b ^ 5 SP1 :                   SP2 :   -   -       -         SP3 :   -   -   -     -         SP4 :           -        
About this scheme ECgene alternative splicing isoforms for ICAM2 1 Ensembl transcript including schematic representation : ENST00000225760
Expression for ICAM2
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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ICAM2 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for ICAM2 1 / 2 / 3
7 probe-sets matching ICAM2 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: GCCACCACCASOURCE GeneReport for Unigene cluster: Hs.431460 Expression variation in blood from EXPOLDB for ICAM2
Orthologs for ICAM2
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for ICAM2 gene from 5 species
About this table Species with no ortholog for ICAM2 ENSEMBL Gene Tree for ICAM2 Paralogs for ICAM2 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for ICAM2 gene ICAM5 2 ICAM1 2 ICAM3 2
SNPs/Variants for ICAM2 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for ICAM2 (up to first 250kb)
Disorders & Mutations for ICAM2
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 146630 10/20 Novoseek disease relationships for ICAM2 gene (see all 20
)
Disease
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
inflammation
31.78
5
10223354 (2), 8083366 (1), 17701178 (1), 9863370 (1)
necrosis
24.46
2
11719371 (1), 10574717 (1)
immunodeficiency
23.45
4
12477827 (1), 14970226 (1), 12122001 (1), 19211748 (1)
tumors
14.74
8
18978946 (3), 1348028 (2), 8604238 (1), 8922057 (1) (see all 5 )
colitis ulcerative
12.01
2
9473377 (1), 10931137 (1)
rheumatoid arthritis
11.47
1
8394794 (1)
senile plaques
4.95
1
7904796 (1)
cancer
3.38
2
14999228 (1), 15269165 (1)
colon carcinoma
1.60
2
11169447 (1)
inflammatory bowel diseases
0.13
1
10931137 (1)
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Medical News for ICAM2 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for ICAM2 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/212 PubMed articles for ICAM2 gene (see all 212
): The human ICAM2 gene maps to 17q23-25. (PubMed id 1769660) 1, 2, 3 Sansom D....Trowsdale J. (1991) Human plasma N-glycoproteome analysis by immunoaffinity subtraction, hydrazide chemistry, and mass spectrometry. (PubMed id 16335952) 3, 4 Liu T.... Smith R.D. (2005) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) Crystal structure of ICAM-2 reveals a distinctive integrin recognition surface. (PubMed id 9153399) 3, 4 Casasnovas J.M.... Wang J.-H. (1997) Functional cloning of ICAM-2, a cell adhesion ligand for LFA-1 homologous to ICAM-1. (PubMed id 2497351) 3, 4 Staunton D.E.... Springer T.A. (1989) Characterization of ICAM-2 and evidence for a third counter-receptor for LFA-1. (PubMed id 1676048) 1, 3 de Fougerolles A.R....Springer T.A. (1991) Towards endothelial cell-specific transgene expression in pigs: characterization of the pig ICAM-2 promoter. (PubMed id 17059578) 1, 3 Godwin J.W....Cowan P.J. (2006) Expression of intercellular adhesion molecules ICAM-1 and ICAM-2 in human endometrium: regulation by interferon-gamma. (PubMed id 10050664) 1, 3 Thomson A.J....Campbell S. (1999) Epithelial ICAM-1 and ICAM-2 regulate the egression of human T cells across the bronchial epithelium. (PubMed id 18842965) 1, 3 Porter J.C. and Hall A. (2009) DC-SIGN binds to HIV-1 glycoprotein 120 in a distinct but overlapping fashion compared with ICAM-2 and ICAM-3. (PubMed id 14970226) 1, 3 Su S.V....Lee B. (2004)
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Genome Databases showing ICAM2
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing ICAM2
(According to HUGE )
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Specialized Databases showing ICAM2 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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Name Description
ATLAS Chromosomes in Cancer entry for ICAM2 Genetics and Cytogenetics in Oncology and Haematology Functional Glycomics Gateway - Glycan Binding http://www.functionalglycomics.org/glycomics/GBPServlet?&operationType=view&cbpId=cbp_hum_Itlect_262
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-- Services for ICAM2 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for ICAM2:
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