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Category Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21

GIFtS
-

ICAM1 Gene

protein-coding GIFtS: 74
GCID: GC19P010381

intercellular adhesion molecule 1

Explore 365 diseases affiliated with
ICAM1 via

MalaCards

our new
Human Malady Compendium

(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc, ⁷Ensembl, ⁸DME, ⁹miRBase, and/or ¹⁰fRNAdb)
About This Section

Aliases
Intercellular Adhesion Molecule 1¹ ²		P3.58²
BB2¹ ²		Cell Surface Glycoprotein P3.58²
CD54¹ ²		Intercellular Adhesion Molecule 1 (CD54), Human Rhinovirus Receptor²
Major Group Rhinovirus Receptor² ³		CD54 Antigen³
ICAM-1² ³

External Ids:	HGNC: 5344¹	Entrez Gene: 3383²	Ensembl: ENSG00000090339⁷	OMIM: 147840⁵	UniProtKB: P05362³

Export aliases for ICAM1 gene to outside databases

Previous GC identifers: GC19P010503 GC19P010604 GC19P010226 GC19P010243 GC19P010244 GC19P010247 GC19P009965

(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for ICAM1:

This gene encodes a cell surface glycoprotein which is typically expressed on endothelial cells and cells of the immune

system. It binds to integrins of type CD11a / CD18, or CD11b / CD18 and is also exploited by Rhinovirus as a receptor.

(provided by RefSeq, Jul 2008)

UniProtKB/Swiss-Prot: ICAM1_HUMAN, P05362

Function: ICAM proteins are ligands for the leukocyte adhesion protein LFA-1 (integrin alpha-L/beta-2). During

leukocyte trans-endothelial migration, ICAM1 engagement promotes the assembly of endothelial apical cups through

ARHGEF26/SGEF and RHOG activation. In case of rhinovirus infection acts as a cellular receptor for the virus

Gene Wiki entry for ICAM1 (ICAM-1)

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section

RefSeq DNA sequence:

NC_000019.9 NC_018930.1 NT_011295.11

Regulatory elements:

SABiosciences Regulatory transcription factor binding sites in the ICAM1 gene promoter:
CREB AP-2alpha isoform 3 deltaCREB AP-2alpha isoform 4 AP-2alpha isoform 2 AP-2alpha AP-2alphaA
Other transcription factors

SwitchGear Promoter luciferase reporter plasmid: ICAM1 promoter sequence

Search SABiosciences Chromatin IP Primers for ICAM1

Epigenetics:

QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat ICAM1

Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 19p13.3-p13.2 Ensembl cytogenetic band: 19p13.2 HGNC cytogenetic band: 19p13.3-p13.2

ICAM1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
ICAM1 gene location

GeneLoc information about chromosome 19 GeneLoc Exon Structure

GeneLoc location for GC19P010381: view genomic region (about GC identifiers)

Start:	10,381,511 bp from pter	End:	10,397,291 bp from pter
Size:	15,781 bases	Orientation:	plus strand

(According to ¹UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to ²PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: ICAM1_HUMAN, P05362 (See protein sequence)

Recommended Name: Intercellular adhesion molecule 1 precursor

Size: 532 amino acids; 57825 Da

Subunit: Homodimer (Probable). Interacts with human herpesvirus 8 MIR2 protein (Probable). Interacts with MUC1 and

promotes cell aggregation in epithelial cells. Interacts with ARHGEF26/SGEF. Binds to coxsackievirus A21 capsid

proteins and acts as a receptor for this virus

Subcellular location: Membrane; Single-pass type I membrane protein

6/11 PDB 3D structures from and Proteopedia for ICAM1 (see all 11):

1D3E (3D)

1D3I (3D)

1D3L (3D)

1IAM (3D)

1IC1 (3D)

1IJ4 (3D)

Secondary accessions: B2R6M3 Q5NKV7 Q96B50

Explore the universe of human proteins at neXtProt for ICAM1: NX_P05362

Post-translational modifications:

Monoubiquitinated, which is promoted by MARCH9 and leads to endocytosis¹

View modification sites using PhosphoSitePlus²

View neXtProt modification sites for NX_P05362

ICAM1 Protein expression data from MOPED and PaxDb: About this image

REFSEQ proteins: NP_000192.2

ENSEMBL proteins:

ENSP00000264832 ENSP00000413124 ENSP00000465680

Reactome Protein details: P05362
Human Recombinant Protein Products:

	Browse Purified and Recombinant Proteins at EMD Millipore
	R&D Systems Recombinant & Natural Proteins for ICAM1 (ICAM-1/CD54)
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	Browse OriGene full length recombinant human proteins expressed in human HEK293 cells OriGene Protein Over-expression Lysate: ICAM1 OriGene Custom Protein Services for ICAM1
	GenScript Custom Purified and Recombinant Proteins Services for ICAM1
	Novus Biologicals ICAM1 Proteins Novus Biologicals ICAM1 Lysate
	Sino Biological Recombinant Protein for ICAM1
	ProSpec Recombinant Protein for ICAM1
	Uscn Proteins for ICAM1

Gene Ontology (GO): 5/6 cellular component terms (GO ID links to tree view) (see all 6): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0001772	immunological synapse	IEA	--
GO:0005615	extracellular space	IDA	9290466
GO:0005886	plasma membrane	TAS	--
GO:0005887	integral to plasma membrane	TAS	2538243
GO:0009897	external side of plasma membrane	IEA	--

ICAM1 for ontologies About GeneDecksing

ICAM1 Antibody Products:

	EMD Millipore Mono- and Polyclonal Antibodies for the study of ICAM1
	R&D Systems Antibodies for ICAM1 (ICAM-1/CD54)
	Cell Signaling Technology (CST) Antibodies for ICAM1
	OriGene Antibodies (see all 3): ICAM1 OriGene Custom Antibody Services for ICAM1
	GenScript Superior Antibodies for ICAM1
	Novus Biologicals ICAM1 Antibodies
	Abcam antibodies for ICAM1
	Uscn Antibodies for ICAM1
	ThermoFisher Antibody for ICAM1

Assay Products for ICAM1:

	EMD Millipore Kits and Assays for the Analysis of ICAM1
	OriGene Custom Immunoassay Development Browse OriGene Fluorogenic Cell Assay Kits
	R&D Systems ELISAs for ICAM1 (ICAM-1/CD54) (see all)
	GenScript Custom Assay Services for ICAM1
	Browse Enzo Life Sciences for kits & assays
	Uscn ELISAs and CLIAs for ICAM1

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

ICAM1 for domains About GeneDecksing

5 InterPro domains/families:

IPR003988 ICAM

IPR013768 ICAM_N

IPR013783 Ig-like_fold

IPR003599 Ig_sub

IPR003987 ICAM_VCAM_N

Graphical View of Domain Structure for InterPro Entry P05362

ProtoNet protein and cluster: P05362

4 Blocks protein families:

IPB003599 Immunoglobulin subtype

IPB003987 Intercellular adhesion molecule/vascular cell adhesion molecule-1 signature

IPB003988 Intercellular adhesion molecule (ICAM) family signature

IPB013768 Intercellular adhesion molecule

UniProtKB/Swiss-Prot: ICAM1_HUMAN, P05362

Similarity: Belongs to the immunoglobulin superfamily. ICAM family

Similarity: Contains 5 Ig-like C2-type (immunoglobulin-like) domains

(According to ¹UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or ²DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
About This Section

Function Summary:

UniProtKB/Swiss-Prot: ICAM1_HUMAN, P05362

Function: ICAM proteins are ligands for the leukocyte adhesion protein LFA-1 (integrin alpha-L/beta-2). During

leukocyte trans-endothelial migration, ICAM1 engagement promotes the assembly of endothelial apical cups through

ARHGEF26/SGEF and RHOG activation. In case of rhinovirus infection acts as a cellular receptor for the virus

Genatlas biochemistry entry for ICAM1:

adhesion molecule,intercellular 1,ligand for LFA1 (CD11A/CD18),expressed on vascular endothelium and

leukocytes,up-regulated by cytokines,inhibiting interleukin 4 production by naive T cells,also interacting with ezrin

VIL2 and ICAM2 in microvillar projections under phosphatidylinositol-4,5 biphosphate regulation,human rhinovirus

receptor with some allele(s) predisposing to cerebral malaria,also contributing to multiple sclerosis susceptibility

miRNA Products:		miRTarBase miRNAs that target ICAM1: hsa-mir-221 (MIRT004430), hsa-mir-1256 (MIRT005710), hsa-mir-17 (MIRT005708), hsa-mir-17 (MIRT004020), hsa-mir-155 (MIRT005709), hsa-mir-31 (MIRT005707), hsa-mir-21 (MIRT005952), hsa-mir-222 (MIRT004595)

		OriGene 3'-UTR Clone: ICAM1 Browse MicroRNA Expression Plasmids
		QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat ICAM1
		4 QIAGEN miScript miRNA Assays for microRNAs that regulate ICAM1:
		hsa-miR-129-5p hsa-miR-3121-3p hsa-miR-1286 hsa-miR-3945
		SwitchGear 3'UTR luciferase reporter plasmid: ICAM1 3' UTR sequence

Inhib. RNA Products:		Browse for Gene Knock-down Tools from EMD Millipore
		OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for ICAM1 (see all 7) OriGene shRNA RFP: ICAM1 OriGene siRNA: ICAM1
		QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat ICAM1

Gene Editing
Products:

DNA2.0 Custom Protein Engineering Service for ICAM1

Clone Products:		Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore
		OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for ICAM1 (see all 3) OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for ICAM1 OriGene custom cloning services � gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
		GenScript: all cDNA clones in your preferred vector: ICAM1 (NM_000201)
		Sino Biological Human cDNA Clone for ICAM1
		DNA2.0 Custom Codon Optimized Gene Synthesis Service for ICAM1
		Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat ICAM1

Cell Line Products:		GenScript Custom overexpressing Cell Line Services for ICAM1
		Search LifeMap BioReagents cell lines for ICAM1

In Situ Assay
Products:

Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ICAM1

Gene Ontology (GO): 5 molecular function terms (GO ID links to tree view): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0004872	receptor activity	TAS	2538243
GO:0004888	transmembrane signaling receptor activity	TAS	2538243
GO:0005178	integrin binding	IPI	1448173
GO:0005515	protein binding	IPI	12716892
GO:0043498	cell surface binding	IEA	--

ICAM1 for ontologies About GeneDecksing

1 GenomeRNAi human phenotype for ICAM1:

Decreased cilium length after

Animal Models:
Mouse knock-outs for ICAM1: Icam1^tm1Bay Icam1^tm1Jcgr Icam1^tm1Cws Icam1^tm1Alb
14 MGI mutant phenotypes (inferred from 4 alleles) (MGI details for Icam1):

cardiovascular system	cellular	digestive/alimentary	endocrine/exocrine gland	growth/size
hematopoietic system	homeostasis/metabolism	immune system	integument	mortality/aging
muscle	nervous system	tumorigenesis	vision/eye

ICAM1 for phenotypes About GeneDecksing

(Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to ¹UniProtKB, ²MINT, ³I2D, and/or ⁴STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
About This Section

Unified GeneCards pathways - 5/32 super-pathways (see all 32) About this table

See pathways by source

Super-pathway

contained gene-specific pathways

Mucin expression in CF via IL-6, IL-17 signaling pathways

	Cytokine production by Th17 cells in CF	0.45			Immune response_MIF-mediated glucocorticoid regulation	0.28
	Immune response MIF-mediated glucocorticoid regulation	0.28

Immune response_IFN gamma signaling pathway

Immune response_IFN gamma signaling pathway

1.00

Immune response IFN gamma signaling pathway

1.00

Cytokine Signaling in Immune system

Cytokine Signaling in Immune system

1.00

Interferon Signaling

0.61

Immune System

Immune System

1.00

Adaptive Immune System

0.59

Interferon gamma signaling

Interferon gamma signaling

1.00

Expression of IFNG-stimulated genes

0.72

Pathway sources
See GeneCards unified pathways
Show all pathways

4 EMD Millipore Pathways for ICAM1

	Immune response IFN gamma signaling pathway
	Development VEGF signaling and activation
	Immune response Role of integrins in NK cells cytotoxicity
	Immune response MIF-mediated glucocorticoid regulation

2 Downloadable PowerPoint Slides of QIAGEN Pathway Central Maps for ICAM1

	LDL Oxidation in Atherogenesis
	Transendothelial Migration of Leukocytes

1 Cell Signaling Technology (CST) Pathway for ICAM1

Adhesion

5/6 GeneGo (Thomson Reuters) Pathways for ICAM1 (see all 6)

	Immune response MIF-mediated glucocorticoid regulation
	Inhibitory action of Lipoxins on neutrophil migration
	Immune response IFN gamma signaling pathway
	Development VEGF signaling and activation
	Immune response Role of integrins in NK cells cytotoxicity

5/9 BioSystems Pathways for ICAM1 (see all 9)

	Type II interferon signaling (IFNG)
	IL-5 Signaling Pathway
	Interleukin-11 Signaling Pathway
	IL-2 Signaling Pathway
	RANKL/RANK Signaling Pathway

5/9 Reactome Pathways for ICAM1 (see all 9)

	Integrin cell surface interactions
	Interferon gamma signaling
	Cytokine Signaling in Immune system
	Immunoregulatory interactions between a Lymphoid and a non-Lymphoid cell
	Expression of IFNG-stimulated genes

5/9 Kegg Pathways (Kegg details for ICAM1) (see all 9):

	Cell adhesion molecules (CAMs)
	Natural killer cell mediated cytotoxicity
	Leukocyte transendothelial migration
	African trypanosomiasis
	Malaria

ICAM1 for pathways About GeneDecksing

Interactions:

SABiosciences Gene Network Central^TM Interacting Genes and Proteins Network for ICAM1

STRING Interaction Network Preview (showing 5 interactants - click image to see 25)

5/67 Interacting proteins for ICAM1 (P05362^{2, 3} ENSP00000264832⁴) via UniProtKB, MINT, STRING, and/or I2D (see all 67)

Interactant		Interaction Details
GeneCard	External ID(s)	Interaction Details
UBC	P0CG48²^,³, ENSP00000344818⁴	MINT-4053108 I2D: score=1 STRING: ENSP00000344818
ITGAM	P11215³, ENSP00000287497⁴	I2D: score=3 STRING: ENSP00000287497
ITGB2	P05107³, ENSP00000303242⁴	I2D: score=3 STRING: ENSP00000303242
FGG	P02679³, ENSP00000336829⁴	I2D: score=1 STRING: ENSP00000336829
ITGAL	P20701³, ENSP00000349252⁴	I2D: score=5 STRING: ENSP00000349252

About this table

Gene Ontology (GO): 5/43 biological process terms (GO ID links to tree view) (see all 43): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0001541	ovarian follicle development	IEA	--
GO:0001666	response to hypoxia	--	--
GO:0001910	regulation of leukocyte mediated cytotoxicity	TAS	16038038
GO:0001975	response to amphetamine	IEA	--
GO:0002291	T cell activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell	IMP	2477710

ICAM1 for ontologies About GeneDecksing

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
About This Section

ICAM1 for compounds About GeneDecksing

Browse Small Molecules at EMD Millipore

Browse drugs & compounds from Enzo Life Sciences

Compounds for ICAM1 available from Tocris Bioscience About this table

Compound	Action	CAS #
A 205804	Selective inhibitor of E-selectin and ICAM-1 expression	[251992-66-2]

1 HMDB Compound for ICAM1 About this table

Compound	Synonyms	CAS #	PubMed Ids
Simvastatin	(+)-Simvastatin (see all 28)	79902-63-9	--

2 DrugBank Compounds for ICAM1 About this table

Compound	Synonyms	CAS #	Type	Actions	PubMed Ids
Natalizumab	Anti-alpha4 integrin (see all 2)	189261-10-7	target	--	11752352
Hyaluronan	Hyaluronate (see all 4)	9067-32-7	target	--	--

10/132 Novoseek chemical compound relationships for ICAM1 gene (see all 132) About this table

Compound	-log (P-Val)	Hits	PubMed IDs for Articles with Shared Sentences (# sentences)
rantes	64.9	105	20350425 (5), 12506144 (4), 12558634 (4), 19834460 (3) (see all 64)
pdtc	58.2	37	7532665 (5), 8871659 (5), 10549609 (3), 10594564 (2) (see all 18)
slex	56.8	30	9430509 (3), 14507735 (2), 15187162 (2), 8547121 (1) (see all 20)
enlimomab	54.1	3	10096530 (1), 11673584 (1), 9973515 (1)
sele	53.7	7	17367508 (2), 18248671 (1), 20101252 (1), 7525451 (1) (see all 6)
lfa703	52.7	3	15618295 (2), 17482516 (1)
fibrinogen	52.2	229	10712387 (7), 15189898 (6), 10903502 (6), 8995280 (5) (see all 90)
groalpha	50.5	7	16687566 (3), 11163401 (1), 11566005 (1), 16858424 (1) (see all 5)
alicaforsen	49.8	6	18774928 (1), 16197343 (1), 11890355 (1)
fmlp	45	19	15550998 (2), 12234777 (2), 12610322 (2), 14723618 (2) (see all 10)

Search CenterWatch for drugs/clinical trials and news about ICAM1

(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from EMD Millipore,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
About This Section

REFSEQ mRNAs for ICAM1 gene:

NM_000201.2

Unigene Cluster for ICAM1:

Intercellular adhesion molecule 1

Hs.643447 [show with all ESTs]

Unigene Representative Sequence: NM_000201

5 Ensembl transcripts including schematic representations, and UCSC links where relevant:

ENST00000264832(uc002mnq.2 uc010xle.1) ENST00000423829 ENST00000588645

ENST00000585443 ENST00000592686

miRNA Products:		OriGene 3'-UTR Clone: ICAM1 Browse OriGene MicroRNA Expression Plasmids
		QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat ICAM1
		4 QIAGEN miScript miRNA Assays for microRNAs that regulate ICAM1:
		hsa-miR-129-5p hsa-miR-3121-3p hsa-miR-1286 hsa-miR-3945
		SwitchGear 3'UTR luciferase reporter plasmid: ICAM1 3' UTR sequence

Inhib. RNA Products:		Browse for Gene Knock-down Tools from EMD Millipore
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		QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat ICAM1

Clone Products:		OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for ICAM1 (see all 3) OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for ICAM1 OriGene custom cloning services � gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
		GenScript: all cDNA clones in your preferred vector: ICAM1 (NM_000201)
		DNA2.0 Custom Codon Optimized Gene Synthesis Service for ICAM1
		Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat ICAM1

Primer Products:		OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for ICAM1 Browse OriGene validated miRNA SYBR primer pairs
		SABiosciences RT² qPCR Primer Assay in human, mouse, rat ICAM1
		QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat ICAM1
		QIAGEN QuantiFast Probe-based Assays in human, mouse, rat ICAM1

Additional cDNA sequence:

AF340038.1 AF340039.1 AK130659.1 AK298054.1 AK298983.1 AK301412.1 AK312636.1 BC015969.2

BT006854.1 J03132.1 M24283.1 M55038.1 S82847.1 X06990.1

15 DOTS entries:

DT.95145860 DT.87016703 DT.100821617 DT.92444106 DT.121464281 DT.95157958 DT.121464277 DT.95229577

DT.121464141 DT.121464225 DT.121464232 DT.121464260 DT.92444125 DT.95282573 DT.100821620

24/282 AceView cDNA sequences (see all 282):

BX360248 CB529704 BQ961824 AI753618 NM_022377 BU192598 BQ940498 CA309669

BP351585 CB265238 AU133414 CK429562 AU133164 BM473834 BQ710223 BM854375

AW069267 BC015969 BI768722 NM_001544 AU099232 BC029364 BI823891 AL545876

GeneLoc Exon Structure

5/6 Alternative Splicing Database (ASD) splice patterns (SP) for ICAM1 (see all 6) About this scheme

ExUns:	1a	·	1b	·	1c	^	2a	·	2b	^	3	^	4	^	5a	·	5b	^	6	^	7a	·	7b	^	8a	·	8b	·	8c	^	9a	·	9b	^	10a	·	10b	·	10c
SP1:													-		-
SP2:									-				-		-
SP3:											-		-		-		-		-		-		-		-		-
SP4:													-		-		-
SP5:																																	-

ECgene alternative splicing isoforms for ICAM1

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section

ICAM1 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: GTTCACTGCA

About this image

ICAM1 expression in embryonic tissues and stem cells

Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine About this table

7 LifeMap In Vivo Development Anatomical Compartments/Cells

Tissue

Anatomical Compartment

Cell

Category (developmental path)

Blood

Peripheral Blood

Granulocyte-Monocyte Progenitor Cells

Selective marker (cell-identifying gene)

Blood

Liver

Sinusoids

Sinusoidal Endothelial Cells

Endothelium

Lateral Plate Mesoderm

Pericytes

Liver

Villous Cytotrophoblast Cells

Extraembryonic Tissues, Placenta

Placenta

Extravillous Cytotrophoblast Layer

Extravillous Cytotrophoblast Cells

Extraembryonic Tissues, Placenta

Heart

Endocardium

Endocardial Tube Cells

Endocardium

Expression:

Positive

Negative

Selective marker

Experimental details:

Curated

Microarrays

In-situ hybridization

Stem Cell Differentiation: 2 LifeMap Cells

Name

Category

CD73-positive cells (Generation of skelet...)

Cardiomyocyte-like cells (Spontaneous differen...)

See ICAM1 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for ICAM1

SOURCE GeneReport for Unigene cluster: Hs.643447

SABiosciences Expression via Pathway-Focused PCR Arrays including ICAM1 (see all 20):

Extracellular Matrix & Adhesion Molecules in human mouse rat

Tight Junctions in human mouse rat

Multiple Sclerosis in human mouse rat

T-cell & B-cell Activation in human mouse rat

Th17 Response in human mouse rat

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(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD , ⁵MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or ⁶Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
About This Section

This gene was present in the common ancestor of chordates.

Orthologs for ICAM1 gene from 1/8 species (see all 8) About this table

Organism	Taxonomic classification	Gene	Description	Human Similarity	Orthology Type	Details
lizard (Anolis carolinensis)	Reptilia	-- ICAM4⁶	--	30(a) 27(a)	many ↔ many many ↔ many	GL344305.1(34371-49910) GL343233.1(1353200-1357090)

ENSEMBL Gene Tree for ICAM1 (if available)
TreeFam Gene Tree for ICAM1 (if available)

(Paralogs according to ¹HomoloGene,
²Ensembl, and ³SIMAP, Pseudogenes according to ⁴Pseudogene.org Build 68)
About This Section

Paralogs for ICAM1 gene

ICAM4² ICAM2² ICAM5² ICAM3²

5 SIMAP similar genes for ICAM1 using alignment to 5 protein entries: ICAM1_HUMAN (see all proteins):

sICAM-1 ICAM-1 P3.58 ICAM5 ICAM3

ICAM1 for paralogs About GeneDecksing

1 Pseudogenes.org Pseudogene for ICAM1
PGOHUM00000237476

(SNPs/Variants according to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section

UniProtKB/Swiss-Prot: ICAM1_HUMAN, P05362

Polymorphism: Homozygotes with ICAM1-Kalifi Met-56 seem to have an increased risk for cerebral malaria [MIM:611162]

SNP ID	Valid	Clinical significance	Chr 19 pos	Sequence	#	AA Chg	Type	More	#	Allele freq	Pop	Total sample	More
Genomic Data					Transcription Related Data				Allele Frequencies
				--	--	--		--	--
rs5491^1,2	C,F,O,H,	other	10385540(+)	`GCCCAA/TGTTGT`	2	K M	mis¹ ese³		34		MN NS EA NA CSA WA EU	8701
rs5499^1,2	C,	--	9976044(+)	`CCTACC/TGGCCC`	3	--	us2k¹ ese³		7		MN	576
rs3093032^1,2	C,F,H,	--	9976315(+)	`TGAGGC/TCCCAC`	3	--	us2k¹ ese³		37		NS NA MN EA	4796
rs5501^1,2	F	--	9976670(+)	`TTCTAT/CCGGCA`	3	--	us2k¹ ese³		2		MN	264
rs5030383^1,2	C,F,H,	--	9976822(+)	`CTCAGC/TGGTCA`	3	--	us2k¹ ese³		10		NS NA WA	1102
rs75407602^1,2	F,	--	9977209(+)	`AGAGAC/TGGGGT`	3	--	us2k¹		1		NA	120
rs182328526^1,2		--	10379693(+)	`CAGAAC/TGAGAC`	1	--	us2k¹		0	--	--	--	--
rs188068327^1,2		--	10379718(+)	`AAACAA/GACAAA`	1	--	us2k¹		0	--	--	--	--
rs140710360^1,2		--	10379743(+)	`CTCAGA/GTGACA`	1	--	us2k¹		0	--	--	--	--
rs150099955^1,2		--	10379894(+)	`TCACCC/TAGGCT`	1	--	us2k¹		0	--	--	--	--

HapMap Linkage Disequilibrium report for ICAM1 (10381511 - 10397291 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV) variations for ICAM1: --
Human Gene Mutation Database (HGMD): ICAM1

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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Novoseek, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
About This Section

ICAM1 for disorders           About GeneDecksing

OMIM gene information: 147840
OMIM disorders: 611162
20/365 diseases for ICAM1 (see all 365):    About MalaCards

vogt-koyanagi-harada disease carotid intimal medial thickness lethal midline granuloma monoclonal gammopathy of undetermined significance

adult-onset still's disease immune-complex glomerulonephritis relapsing-remitting multiple sclerosis lichen planus

b-cell non-hodgkin lymphoma extrinsic allergic alveolitis middle ear cholesteatoma common cold

diffuse large b-cell lymphoma human t-cell leukemia virus type 1 hypersensitivity reaction type ii disease non-hodgkin lymphoma

parainfluenza virus type 3 erythema multiforme proliferative diabetic retinopathy dissecting cellulitis of the scalp

20/28 diseases from the University of Copenhagen DISEASES database for ICAM1 (see all 28):

Atherosclerosis Asthma Hypersensitivity reaction type II disease Diabetes mellitus

Malaria Heart disease Kidney disease Dermatitis

Leukostasis Arthritis Hypertension Cerebrovascular accident

Vasculitis Inflammatory bowel disease Psoriasis Melanoma

Diabetic retinopathy Connective tissue disease Lymphoma Allergic rhinitis

10/95 Novoseek disease relationships for ICAM1 gene (see all 95) About this table

Disease	-log (P-Val)	Hits	PubMed IDs for Articles with Shared Sentences (# sentences)
inflammation	82.7	484	15037117 (4), 7912141 (3), 7512004 (3), 7524087 (3) (see all 99)
necrosis	81.6	718	8104967 (3), 17452936 (3), 15764154 (3), 1974275 (2) (see all 99)
atherosclerosis	70.2	108	18420209 (4), 9416885 (3), 12425201 (2), 9187938 (2) (see all 78)
tumors	68.8	1040	8605704 (7), 10738180 (6), 10090402 (5), 12149643 (5) (see all 99)
malaria cerebral	60.2	16	7650476 (2), 9259284 (2), 9502610 (1), 9861406 (1) (see all 13)
psoriasis	53	37	7902785 (4), 8867647 (2), 7521104 (2), 9749989 (1) (see all 27)
melanoma	50.2	323	1347555 (7), 9241963 (7), 7915992 (6), 1284075 (6) (see all 99)
rheumatoid arthritis	49.5	48	7911453 (2), 8856611 (2), 18475445 (2), 7897232 (2) (see all 34)
asthma	47.9	135	11144049 (4), 9111502 (3), 7802929 (3), 1967851 (3) (see all 76)
atherosclerotic plaque	47.8	27	16430720 (4), 8095156 (2), 20075743 (2), 8640995 (2) (see all 19)

Genetic Association Database (GAD): ICAM1
Human Genome Epidemiology (HuGE) Navigator: ICAM1 (209 documents)

Export disorders for ICAM1 gene to outside databases

(in PubMed. Associations of this gene to articles via ¹Entrez Gene, ²UniProtKB/Swiss-Prot, ³HGNC, ⁴GAD, ⁵PharmGKB, ⁶HMDB, ⁷DrugBank, ⁸UniProtKB/TrEMBL, ⁹ Novoseek, and/or ¹⁰fRNAdb)
About This Section

PubMed articles for ICAM1 gene, integrated from 9 sources (see all 4259):
(articles sorted by number of sources associating them with ICAM1)

Utopia: connect your pdf to the dynamic
world of online information

Plasmodium falciparum malaria in south-west Nigerian children: is the polymorphism of ICAM-1 and E-selectin genes contributing to the clinical severity of malaria? (PubMed id 16002039)^{1, 4, 9} Amodu O.K....Omotade O.O. (2005)
ICAM-1 polymorphisms and development of cutaneous malignant melanoma. (PubMed id 16313300)^{1, 4, 9} Howell W.M....Bateman A.C. (2005)
Intercellular adhesion molecule-1 (ICAM-1) polymorphism is associated with diabetic retinopathy in Type 2 diabetes mellitus. (PubMed id 12027924)^{1, 4, 9} Kamiuchi K....Nakamura N. (2002)
A high frequency African coding polymorphism in the N-terminal domain of ICAM-1 predisposing to cerebral malaria in Kenya. (PubMed id 9259284)^{1, 2, 9} Fernandez-Reyes D.... Newbold C.I. (1997)
Gene polymorphisms and serological markers of patients with active Crohn's disease in a clinical trial of antisense to ICAM-1. (PubMed id 15958080)^{1, 4, 9} Yacyshyn B.R....Tami J.A. (2005)
ICAM G241A polymorphism and soluble ICAM-1 serum levels: evidence for an active immune process in schizophrenia. (PubMed id 15756053)^{1, 4, 9} Kronig H....Muller N. (2005)
Influence of cytokine and ICAM-1 gene polymorphisms on susceptibility to chronic pancreatitis. (PubMed id 15917409)^{1, 4, 9} Howell W.M....Bateman A.C. (2005)
Intercellular adhesion molecule 1 (ICAM-1) gene variant is associated with coronary artery calcification independent of soluble ICAM-1 levels. (PubMed id 15682683)^{1, 4, 9} Reilly M.P....Rader D.J. (2004)
Inflammatory bowel disease is linked to 19p13 and associated with ICAM-1. (PubMed id 15290909)^{1, 4, 9} Low J.H....Jewell D.P. (2004)
Genetic risk factors for cerebrovascular disease in children with sickle cell disease: design of a case-control association study and genomewide screen. (PubMed id 12871600)^{1, 4, 9} Adams G.T....Kutlar A. (2003)

(in PubMed, OMIM, and NCBI Bookshelf)
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		AND	OR
Aliases
Disorders
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
About This Section

Entrez Gene: 3383	HGNC: 5344	AceView: ICAM1andICAM4	Ensembl:ENSG00000090339	euGenes: HUgn3383
ECgene: ICAM1	Kegg: 3383	H-InvDB: ICAM1

(According to HUGE)
About This Section

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

Name	Description
PharmGKB entry for ICAM1	Pharmacogenomics, SNPs, Pathways
ATLAS Chromosomes in Cancer entry for ICAM1	Genetics and Cytogenetics in Oncology and Haematology
Wikipedia	http://en.wikipedia.org/wiki/Intercellular_adhesion_molecule
SeattleSNPs	http://pga.gs.washington.edu/data/icam1/
Virus Particle ExploreR db	http://viperdb.scripps.edu/info_page.php?VDB=1z7z
Functional Glycomics Gateway - Glycan Binding	http://www.functionalglycomics.org/glycomics/GBPServlet?&operationType=view&cbpId=cbp_hum_Itlect_261

Intellectual Property for ICAM1 gene
(Patent information from GeneIP, Licensable technologies from WIS Yeda, Salk, Tufts, IP news from LifeMap Sciences, Inc.)

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Patent Information for ICAM1 gene:
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intercellular adhesion molecule 1

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Leukemia T-Cell
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ICAM1 Gene

intercellular adhesion molecule 1

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