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Aliases & Descriptions for ICAM1
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| BB2 1, 2 | | CD54 1, 2 | | ICAM-1 3 | | P3.58 2 |
| | | Descriptions |
|---|
| CD54 antigen 3 | | Major group rhinovirus receptor 3 | | cell surface glycoprotein P3.58 2 | | human rhinovirus receptor 2 | | intercellular adhesion molecule 1 2 | intercellular adhesion molecule 1 (CD54), human rhinovirus receptor 2 |
|
| | Search outside databases for aliases for ICAM1 genePrevious GC identifers: GC19P010503 GC19P010604 GC19P010226 GC19P010243 GC19P010244 |
Summaries for ICAM1(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for ICAM1: This gene encodes a cell surface glycoprotein which is typically expressed on endothelial cells and cells of the immune system. It binds to integrins of type CD11a / CD18, or CD11b / CD18 and is also exploited by Rhinovirus as a receptor. [provided by RefSeq] UniProtKB/Swiss-Prot: ICAM1_HUMAN, P05362Function: ICAM proteins are ligands for the leukocyte adhesion protein LFA-1 (integrin alpha-L/beta-2). During leukocyte trans-endothelial migration, ICAM1 engagement promotes the assembly of endothelial apical cups through SGEF and RHOG activation. In case of rhinovirus infection acts as a cellular receptor for the virusGene Wiki entry for ICAM1 (ICAM-1) |
Genomic Location for ICAM1
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the ICAM1 gene 
Entrez Gene cytogenetic band: 19p13.3-p13.2 Ensembl cytogenetic band: 19p13.2 HGNC cytogenetic band: 19p13.3-p13.2ICAM1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 19 GeneLoc Exon Structure GeneLoc location for GC19P010247:
(about GC identifiers)
Start:
|
10,242,765 bp from pter |
End:
|
10,258,291 bp from pter |
Size:
|
15,527 bases |
Orientation:
|
plus strand |
RefSeq DNA sequence:- NC_000019.8 NT_011295.10
| Proteins for ICAM1
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: ICAM1_HUMAN, P05362 (See
protein sequence)Recommended Name: Intercellular adhesion molecule 1 precursor Size: 532 amino acids; 57825 Da
Subunit: Homodimer (Probable). Interacts with human herpesvirus 8 MIR2 protein (Probable). Interacts with MUC1 and promotes cell aggregation in epithelial cells. Interacts with SGEF. Binds to coxsackievirus A21 capsid proteins and acts as a receptor for this virus
Subcellular location: Membrane; Single-pass type I membrane protein
PDB structures from and Proteopedia :1D3E (3D)
 1D3I (3D)
 1D3L (3D)
 1IAM (3D)
 1IC1 (3D)
 1IJ4 (3D)
 1MQ8 (3D)
 1P53 (3D)
 1Z7Z (3D)
 2OZ4 (3D)
 
Secondary accessions: Q5NKV7 Q96B50Post-translational modifications:
Monoubiquitinated, which is promoted by MARCH9 and leads to endocytosis1
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_000192.2
ENSEMBL proteins: ENSP00000264832
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
5 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for ICAM1:  | Invitrogen Antibodies for ICAM1 |  | Millipore Mono- and Polyclonal Antibodies for the study of ICAM1 |  | Sigma-Aldrich Antibodies for ICAM1 |  | R&D Systems Antibodies for ICAM1 (ICAM-1/CD54) |  | Antibodies from Abcam (ICAM1, CD8 + CD54, CD3 + CD54), each with their AbpromiseSM |  | Monoclonal and Polyclonal Antibodies from Abnova (ICAM1) |  | Novus Biologicals Antibodies for ICAM1 |
Assays for ICAM1: | Protein
Domains/ Families for ICAM1(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P05362
ProtoNet protein and cluster: P05362 4 Blocks protein families: IPB003599 Immunoglobulin subtype IPB003987 Intercellular adhesion molecule/vascular cell adhesion molecule-1 signature IPB003988 Intercellular adhesion molecule (ICAM) family signature IPB013768 Intercellular adhesion molecule
UniProtKB/Swiss-Prot: ICAM1_HUMAN, P05362Similarity: Belongs to the immunoglobulin superfamily. ICAM familySimilarity: Contains 5 Ig-like C2-type (immunoglobulin-like) domains | Gene Function for ICAM1
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_000201
Applied Biosystems Silencer® siRNAs for ICAM1
Sigma-Aldrich siRNA and siRNA Panels for ICAM1  Sigma-Aldrich shRNA Panels and shRNA for ICAM1  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_000201                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_000201                                  untagged cDNA clone in CMV expression vector: NM_000201 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_000201
UniProtKB/Swiss-Prot: ICAM1_HUMAN, P05362Function: ICAM proteins are ligands for the leukocyte adhesion protein LFA-1 (integrin alpha-L/beta-2). During leukocyte trans-endothelial migration, ICAM1 engagement promotes the assembly of endothelial apical cups through SGEF and RHOG activation. In case of rhinovirus infection acts as a cellular receptor for the virusGenatlas biochemistry entry for ICAM1:adhesion molecule,intercellular 1,ligand for LFA1 (CD11A/CD18),expressed on vascular endothelium and leukocytes,up-regulated by cytokines,inhibiting interleukin 4 production by naive T cells,also interacting with ezrin VIL2 and ICAM2 in microvillar projections under phosphatidylinositol-4,5 biphosphate regulation,human rhinovirus receptor with some allele(s) predisposing to cerebral malaria,also contributing to multiple sclerosis susceptibility14 MGI mutant phenotypes (inferred from 4 alleles ) (MGI details for Icam1):
3 Gene Ontology (GO) molecular function terms (links to tree view): About this table | Pathways & Interactions for ICAM1
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
5/8 Sigma-Aldrich "Your Favorite Gene" Pathways for ICAM1 (Your Favorite Gene powered by Ingenuity) (see all 8
) 
Gene Network CentralTM Interacting Genes and Proteins Network for ICAM1 
5/268 Interacting proteins for ICAM1 (ENSP000002648323 P053622) via UniProtKB, MINT, and/or STRING (see all 268
)About this table
5/13 Gene Ontology (GO) biological process terms (links to tree view) (see all 13
): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0001910 | regulation of leukocyte mediated cytotoxicity |
TAS | 16038038 | | GO:0002291 | T cell activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell |
IMP | 2477710 | | GO:0002457 | T cell antigen processing and presentation |
IEA | -- | | GO:0002693 | positive regulation of cellular extravasation |
IMP | 12902516 | | GO:0007157 | heterophilic cell adhesion |
TAS | 2477710 | About this table
|
Drugs & Compounds for ICAM1(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Compounds for ICAM1 available from Tocris Bioscience
| Compound | Action |
CAS
number |
|---|
| A 205804 | Selective inhibitor of E-selectin and ICAM-1 expression | [251992-66-2] | About this table
10/31 Novoseek chemical compound relationships for ICAM1 gene (see all 31
)
| Compound |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| rantes |
64.84 |
95 |
12506144 (4), 12558634 (4), 9625753 (3), 9848225 (3) (see all 60) |
| slex |
57.86 |
30 |
9430509 (3), 14507735 (2), 15187162 (2), 8547121 (1) (see all 20) |
| enlimomab |
55.94 |
3 |
10096530 (1), 11673584 (1), 9973515 (1) |
| lfa703 |
53.20 |
3 |
15618295 (2), 17482516 (1) |
| fibrinogen |
52.20 |
211 |
10712387 (7), 15189898 (6), 10903502 (6), 8995280 (5) (see all 86) |
| maltose 1-phosphate |
48.90 |
2 |
9543101 (2) |
| fmlp |
44.50 |
19 |
15550998 (2), 12234777 (2), 12610322 (2), 14723618 (2) (see all 10) |
| groalpha |
43.47 |
7 |
16687566 (3), 11163401 (1), 11566005 (1), 16858424 (1) (see all 5) |
| phorbol |
42.07 |
13 |
9765268 (2), 8103344 (1), 8703996 (1), 9770366 (1) (see all 11) |
| cps-m |
41.08 |
1 |
2124247 (1) |
About this table
1 PharmGKB drug compound relationship for ICAM1 gene
| Drug compound |
PharmGKB Relations |
PubMed IDs for articles supporting these relationships |
| glucocorticoids | FA   | 12729843 | About this table
|
Transcripts for ICAM1(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_000201
Sigma-Aldrich siRNA and siRNA Panels for ICAM1  Sigma-Aldrich shRNA Panels and shRNA for ICAM1  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_000201 REFSEQ mRNAs for ICAM1 gene: NM_000201.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_000201               OriGene GFP tagged cDNA clone in CMV expression vector: NM_000201                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_000201                                  untagged cDNA clone in CMV expression vector: NM_000201  Additional cDNA sequence: AF340038.1 AF340039.1 AK130659.1 AK298054.1 AK298983.1 AK301412.1 AK312636.1 BC015969.2 BT006854.1 CR617464.1 J03132.1 M24283.1 M55038.1 S82847.1 X06990.1 15 DOTS entries: DT.87016703 DT.95145860 DT.100821617 DT.92444106 DT.121464281 DT.95157958 DT.100821620 DT.121464277 DT.95229577 DT.121464141 DT.121464225 DT.121464232 DT.121464260 DT.92444125 DT.95282573 24/282 AceView cDNA sequences (see all 282
):BI823891 CF126469 NM_022377 NM_001544 AU279886 BM855025 BC000046 BQ961824 BQ678186 AU104806 BI772468 CB265238 BG945719 BU192598 BP351585 CB529024 AU133164 CK429562 BM473834 AA306799 AU099232 AL545876 CB529704 BQ678437
highest scoring ESTs for ICAM1:M24283 AA197311 AA306799 AA314976 AA367199 AI078051 AI380729 AI432669 AI608725 AI753027 Unigene Cluster for ICAM1: Intercellular adhesion molecule 1 Hs.643447 [show with all ESTs]Unigene Representative Sequence: NM_000201
GeneLoc Exon Structure
5/6 Alternative Splicing Database (ASD) splice patterns (SP) for ICAM1 (see all 6
)
| ExUns: | 1a | · | 1b | · | 1c | ^ | 2a | · | 2b | ^ | 3 | ^ | 4 | ^ | 5a | · | 5b | ^ | 6 | ^ | 7a | · | 7b | ^ | 8a | · | 8b | · | 8c | ^ | 9a | · | 9b | ^ | 10a | · | 10b | · | 10c | |
| SP1: | |   | |   | |   | |   | |   | |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP2: | |   | |   | |   | |   | - |   | |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP3: | |   | |   | |   | |   | |   | - |   | - |   | - |   | - |   | - |   | - |   | - |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |
| SP4: | |   | |   | |   | |   | |   | |   | - |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP5: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | - |   | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for ICAM1
1 Ensembl transcript including schematic representation: ENST00000264832
|
Expression for ICAM1
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| ICAM1 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for ICAM1
1 / 2 / 3 7 probe-sets matching ICAM1 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: GTTCACTGCA
SOURCE GeneReport for Unigene cluster: Hs.643447
Expression variation in blood from EXPOLDB for ICAM1 |
Orthologs for ICAM1
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for ICAM1 gene from 5 species
About this table Species with no ortholog for ICAM1
ENSEMBL Gene Tree for ICAM1 | Paralogs for ICAM1(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for ICAM1 gene
- ICAM52 ICAM22 ICAM32
|
SNPs/Variants for ICAM1(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
| UniProtKB/Swiss-Prot: ICAM1_HUMAN, P05362Polymorphism: Homozygotes with ICAM1-Kalifi Met-56 seem to have an increased risk for cerebral malaria
HapMap Linkage Disequilibrium images for ICAM1 (up to first 250kb)
|
Disorders & Mutations for ICAM1
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 147840 disorders: 611162 10/96 Novoseek disease relationships for ICAM1 gene (see all 96
)
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| inflammation |
82.41 |
466 |
15037117 (4), 7912141 (3), 7512004 (3), 7524087 (3) (see all 99) |
| necrosis |
81.62 |
691 |
8104967 (3), 17452936 (3), 15764154 (3), 1974275 (2) (see all 99) |
| atherosclerosis |
69.12 |
104 |
18420209 (4), 9416885 (3), 12425201 (2), 9187938 (2) (see all 75) |
| tumors |
68.61 |
994 |
8605704 (7), 10738180 (6), 10090402 (5), 12149643 (5) (see all 99) |
| malaria cerebral |
60.95 |
16 |
7650476 (2), 9259284 (2), 9502610 (1), 9861406 (1) (see all 13) |
| psoriasis |
53.83 |
37 |
7902785 (4), 8867647 (2), 7521104 (2), 9749989 (1) (see all 27) |
| melanoma |
51.65 |
320 |
1347555 (7), 9241963 (7), 7915992 (6), 1284075 (6) (see all 99) |
| rheumatoid arthritis |
49.22 |
44 |
7911453 (2), 8856611 (2), 18475445 (2), 7897232 (2) (see all 32) |
| graves disease |
48.46 |
55 |
1348415 (4), 11578685 (3), 9343311 (3), 7626551 (3) (see all 32) |
| asthma |
47.93 |
130 |
11144049 (4), 9111502 (3), 7802929 (3), 1967851 (3) (see all 74) |
About this table
Human Gene Mutation Database: ICAM1 Genetic Association Database: ICAM1 Human Genome Epidemiology Navigator: ICAM1 (143 documents)
|
Medical News for ICAM1(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for ICAM1 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/3562 PubMed articles for ICAM1 gene (see all 3562
):- Polymorphisms of the ICAM-1 gene are associated with inflammatory bowel disease, regardless of the p-ANCA status. (PubMed id 11726228)1, 3, 6 Braun C....Folwaczny C. (2001)
- ICAM-1 polymorphisms and development of cutaneous malignant melanoma. (PubMed id 16313300)1, 3, 6 Howell W.M....Bateman A.C. (2005)
- Influence of cytokine and ICAM-1 gene polymorphisms on susceptibility to chronic pancreatitis. (PubMed id 15917409)1, 3, 6 Howell W.M....Bateman A.C. (2005)
- Intercellular adhesion molecule-1 (ICAM-1) polymorphism is associated with diabetic retinopathy in Type 2 diabetes mellitus. (PubMed id 12027924)1, 3, 6 Kamiuchi K....Nakamura N. (2002)
- A high frequency African coding polymorphism in the N-terminal domain of ICAM-1 predisposing to cerebral malaria in Kenya. (PubMed id 9259284)1, 3, 4 Fernandez-Reyes D.... Newbold C.I. (1997)
- Gene polymorphisms and serological markers of patients with active Crohn's disease in a clinical trial of antisense to ICAM-1. (PubMed id 15958080)1, 3, 6 Yacyshyn B.R....Tami J.A. (2005)
- Plasmodium falciparum malaria in south-west Nigerian children: is the polymorphism of ICAM-1 and E-selectin genes contributing to the clinical severity of malaria? (PubMed id 16002039)1, 3, 6 Amodu O.K....Omotade O.O. (2005)
- ICAM G241A polymorphism and soluble ICAM-1 serum levels: evidence for an active immune process in schizophrenia. (PubMed id 15756053)1, 3, 6 Kronig H....Muller N. (2005)
- Intercellular adhesion molecule 1 (ICAM-1) gene variant is associated with coronary artery calcification independent of soluble ICAM-1 levels. (PubMed id 15682683)1, 3, 6 Reilly M.P....Rader D.J. (2004)
- Inflammatory bowel disease is linked to 19p13 and associated with ICAM-1. (PubMed id 15290909)1, 3, 6 Low J.H....Jewell D.P. (2004)
|
Search for ICAM1
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing ICAM1
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing ICAM1
(According to HUGE)
About This Section
| -- |
Specialized Databases showing ICAM1(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for ICAM1(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for ICAM1:

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Incremental update: 13 Oct 2009
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