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Aliases & Descriptions for ICA1
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases ICA69 2 , 3 ICAp69 1 , 2 , 3 p69 3
Descriptions 69 kDa islet cell autoantigen 3 Islet cell autoantigen p69 2 , 3 diabetes mellitus type I autoantigen 2 islet cell autoantigen 1 2 islet cell autoantigen 1 (69kD) 1 , 2 islet cell autoantigen 1 isoform 2 islet cell autoantigen 1, 69kDa 2
Search outside databases for aliases for ICA1 genePrevious GC identifers: GC07M007797 GC07M007897 GC07M007926
Summaries for ICA1 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for ICA1 : This gene encodes a protein with an arfaptin homology domain that is found both in the cytosol andas membrane-bound form on the Golgi complex and immature secretory granules. This protein isbelieved to be an autoantigen in insulin-dependent diabetes mellitus and primary Sjogren'ssyndrome. Alternatively spliced variants which encode different protein isoforms have beendescribed; however, not all variants have been fully characterized. [provided by RefSeq] UniProtKB/Swiss-Prot: ICA69_HUMAN, Q05084 Function : May play a role in neurotransmitter secretion (By similarity)
Gene Wiki entry for ICA1
Genomic Location for ICA1
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
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Transcription factor binding sites according to
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the ICA1 gene Entrez Gene cytogenetic band: 7p22 Ensembl cytogenetic band: 7p21.3 HGNC cytogenetic band: 7p22 ICA1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 7 GeneLoc Exon Structure
GeneLoc location for GC07M008119:
(about GC identifiers )
Start:
8,119,339 bp from pter
End:
8,268,767 bp from pter
Size:
149,429 bases
Orientation:
minus strand
1 alternative location : Chr 7-,CRA_TCAG 8,198,979-8,348,327
RefSeq DNA sequence: NC_000007.12 NT_007819.16 NT_079592.2 Proteins for ICA1
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
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Abnova ,
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Abcam ,
Biochemical Assays by
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Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
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UniProtKB/Swiss-Prot: ICA69_HUMAN, Q05084 (See
protein sequence )Recommended Name: Islet cell autoantigen 1 Size : 483 amino acids; 54645 Da
Subcellular location : Cytoplasm, cytosol. Golgi apparatus membrane; Peripheral membrane protein(Potential). Cytoplasmic vesicle, secretory vesicle membrane; Peripheral membrane protein(Potential). Cytoplasmic vesicle, secretory vesicle, synaptic vesicle membrane; Peripheralmembrane protein (Potential). Note=Predominantly cytosolic. Also exists as a membrane-bound formwhich has been found associated with synaptic vesicles and also with the Golgi complex andimmature secretory granules
Secondary accessions : P78506 Q13824
Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (3 alternative transcripts):
NP_001129492.1 NP_004959.2 NP_071682.1 ENSEMBL proteins: ENSP00000386021 ENSP00000316074 ENSP00000385651 ENSP00000265577 ENSP00000341603 ENSP00000385125 ENSP00000385305 ENSP00000385570 ENSP00000379908 Human Recombinant Proteins                OriGene Purified Recombinant Human Proteins (see all 2 ): ICA1 5/10 Gene Ontology (GO) cellular component terms (links to tree view) (see all 10
):
About this table Antibodies for ICA1: Assays for ICA1:
Protein
Domains/ Families for ICA1(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry Q05084 ProtoNet protein and cluster: Q05084
2 Blocks protein families : IPB006723 Islet cell autoantigen ICA69 homologue IPB010504 Arfaptin-like UniProtKB/Swiss-Prot: ICA69_HUMAN, Q05084 Similarity : Contains 1 AH domain
Gene Function for ICA1
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
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Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
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SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 4 ): NM_001136020 Applied Biosystems Silencer ® siRNAs for ICA1 Sigma-Aldrich siRNA for ICA1 Sigma-Aldrich shRNA for ICA1 Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 3 ): NM_001136020                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 3 ): NM_001136020                                  untagged cDNA clones in CMV expression vector (see all 4 ): NM_001136020  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_001136020 UniProtKB/Swiss-Prot: ICA69_HUMAN, Q05084 Function : May play a role in neurotransmitter secretion (By similarity)
Genatlas biochemistry entry for ICA1 :islet cell antigen 1,encoding p69 protein,candidate autoimmune target in insulin dependent diabetes
4 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Ica1) :2 Gene Ontology (GO) molecular function terms (links to tree view) :
About this table
Pathways & Interactions for ICA1
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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1 Sigma-Aldrich "Your Favorite Gene" Pathway for ICA1 (Your Favorite Gene powered by Ingenuity) 5/9 Interacting proteins for ICA1 (Q05084 1 ENSP00000265577 3 ) via UniProtKB, MINT, and/or STRING (see all 9
)About this table 1 Gene Ontology (GO) biological process term (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0006836 neurotransmitter transport
IEA --
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Drugs & Compounds for ICA1 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for ICA1 1 Novoseek chemical compound relationship for ICA1 gene
Compound
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
tyrosine
0.00
2
9054945 (1), 10886245 (1)
About this table
Transcripts for ICA1(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
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siRNAs from Applied Biosystems ,
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 4 ): NM_001136020 Sigma-Aldrich siRNA for ICA1 Sigma-Aldrich shRNA for ICA1 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_001136020 NM_004968 NM_022307
REFSEQ mRNAs for ICA1 gene (3 alternative transcripts): NM_001136020.1 NM_004968.2 NM_022307.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001136020 NM_004968 NM_022307
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 3 ): NM_001136020                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 3 ): NM_001136020                                  untagged cDNA clones in CMV expression vector (see all 4 ): NM_001136020  
Additional cDNA sequence: AK292106.1 BC008640.2 CR601104.1 CR605198.1 CR620744.1 CR624499.1 EU416199.1 L01100.1 L21181.1 U26591.1 U37183.1
18 DOTS entries : DT.95181863 DT.452369 DT.100687709 DT.95181856 DT.86851562 DT.121092340 DT.100767508 DT.100013159 DT.95181866 DT.87015565 DT.100836789 DT.121092330 DT.121092353 DT.75102828 DT.95181855 DT.95181865 DT.120658835 DT.97858648
24/153 AceView cDNA sequences (see all 153
):BU070273 CR601104 AI285041 AA421512 AA482169 BX331325 U37183 CR624499 BM853042 BG776267 BM853686 BE736046 BC008640 BX354959 CR605198 BX464865 CB178778 CB134411 AI654123 AI720028 BE549769 AA916921 BU681497 CR620744
highest scoring ESTs for ICA1 :AL517028 BC008640 BF240155 BI830528 CK141543 L01100 U26591 U38260 AA482169 AA491302
Unigene Cluster for ICA1: Islet cell autoantigen 1, 69kDa Hs.487561 [show with all ESTs ] Unigene Representative Sequence: NM_004968 GeneLoc Exon Structure 5 Alternative Splicing Database (ASD) splice patterns (SP) for ICA1 ExUns: 1a · 1b · 1c ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8a · 8b ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 ^ 14 ^ 15 ^ 16a · 16b · 16c SP1 :       -           -                           SP2 :       -           -                           SP3 :       -           -         -   -   -   -   -           SP4 :         -   -   -   -   -   -   -   -   -   -   -   -   -           SP5 :                                          
About this scheme ECgene alternative splicing isoforms for ICA1 9 Ensembl transcripts including schematic representations : ENST00000407906
ENST00000317367
ENST00000406470
ENST00000265577
ENST00000339809
ENST00000404556
ENST00000401396
ENST00000402384
ENST00000396675
Expression for ICA1
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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ICA1 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for ICA1 1 / 2 / 3
10 probe-sets matching ICA1 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: CCGCCCCCAGSOURCE GeneReport for Unigene cluster: Hs.487561 Expression variation in blood from EXPOLDB for ICA1
UniProtKB/Swiss-Prot: ICA69_HUMAN, Q05084 Tissue specificity : Expressed abundantly in pancreas, heart and brain with low levels of expressionin lung, kidney, liver and thyroid
Orthologs for ICA1
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for ICA1 gene from 5/13 species (see all 13
)
About this table Species with no ortholog for ICA1 ENSEMBL Gene Tree for ICA1 Paralogs for ICA1 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for ICA1 gene ICA1L 2
SNPs/Variants for ICA1 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for ICA1 (up to first 250kb)
Disorders & Mutations for ICA1
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
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OMIM: 147625 UniProtKB/Swiss-Prot: ICA69_HUMAN, Q05084
Identified as an autoantigen in insulin-dependent diabetes mellitus
7 Novoseek disease relationships for ICA1 gene
About this table
Medical News for ICA1 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for ICA1 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/41 PubMed articles for ICA1 gene (see all 41
): Cloning of human and rat p69 cDNA, a candidate autoimmune target in type 1 diabetes. (PubMed id 7918678) 1, 2, 3, 4 Miyazaki I.... Dosch H.-M. (1994) ICA69 is expressed equally in the human endocrine and exocrine pancreas. (PubMed id 8777998) 1, 2, 3 Mally M.I....Otonkoski T. (1996) Islet cell autoantigen of 69 kDa is an arfaptin-related protein associated with the Golgi complex of insulinoma INS-1 cells. (PubMed id 12682071) 1, 3, 4 Spitzenberger F.... Solimena M. (2003) Genomic organization and transcript analysis of ICAp69, a target antigen in diabetic autoimmunity. (PubMed id 8975715) 1, 3, 4 Gaedigk R.... Dosch H.-M. (1996) Islet cell autoantigen 69 kD (ICA69). Molecular cloning and characterization of a novel diabetes-associated autoantigen. (PubMed id 8326004) 3, 4 Pietropaolo M.... Eisenbarth G.S. (1993) Alternative core promoters regulate tissue-specific transcription from the autoimmune diabetes-related ICA1 (ICA69) gene locus. (PubMed id 12409289) 1, 3 Friday R.P....Pietropaolo M. (2003) Autoantibodies to the islet antigen ICA69 occur in IDDM and in rheumatoid arthritis. (PubMed id 7758883) 1, 3 Martin S....Pfutzner A. (1995) Gene expression of islet cell antigen p69 in human, mouse, and rat. (PubMed id 8603775) 1, 3 Karges W....Dosch H.M. (1996) T cell activation and anergy to islet cell antigen in type I diabetes. (PubMed id 7822811) 1, 3 Miyazaki I.... Dosch H.M. (1995) ICA1 encoding p69, a protein linked to the development of type 1 diabetes, maps to human chromosome 7p22. (PubMed id 8162706) 1, 3 Gaedigk R.... Dosch H.M. (1994)
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Genome Databases showing ICA1
(According to
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miRBase ,
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and/or
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Specialized Databases showing ICA1 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for ICA1 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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