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Aliases for IBA57-AS1 Gene

Subcategory (RNA class) for IBA57-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for IBA57-AS1 Gene

  • IBA57 Antisense RNA 1 (Head To Head) 2 3 5
  • C1orf148 3 4
  • Chromosome 1 Open Reading Frame 148 2
  • IBA57 Antisense Gene Protein 1 4
  • IBA57 Antisense RNA 1 4

External Ids for IBA57-AS1 Gene

Previous HGNC Symbols for IBA57-AS1 Gene

  • C1orf148

Previous GeneCards Identifiers for IBA57-AS1 Gene

  • GC01M228355

Summaries for IBA57-AS1 Gene

GeneCards Summary for IBA57-AS1 Gene

IBA57-AS1 (IBA57 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for IBA57-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for IBA57-AS1 Gene

Genomics for IBA57-AS1 Gene

GeneHancer (GH) Regulatory Elements for IBA57-AS1 Gene

Promoters and enhancers for IBA57-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I228161 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 550.8 +0.9 930 6.2 MLX DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 NFYC GLIS1 IBA57 GC01P228168 IBA57-AS1 PIR46737 OBSCN CICP26 ENSG00000269890 CDC42BPA HIST3H3 C1orf35
GH01I227733 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 10.2 +430.4 430420 2.8 MLX ZFP64 FEZF1 DMAP1 IRF4 SLC30A9 ZNF213 E2F8 ZNF416 ZNF143 JMJD4 CICP26 ZNF678 C1orf35 CDC42BPA ENSG00000269890 HIST3H3 SNAP47 MRPL55 IBA57-AS1
GH01I228455 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 10.2 -292.4 -292389 4.2 CLOCK FEZF1 ZNF213 E2F8 ZNF143 SP3 ZFP41 ZNF610 GLIS1 NBN GC01M228457 HIST3H2A HIST3H2BB CICP26 C1orf35 ENSG00000269890 ZNF678 HIST3H3 LOC105373159 JMJD4
GH01I227322 Enhancer 0.7 ENCODE 13.1 +842.1 842149 1.7 PKNOX1 USF1 JUN RAD21 GATA3 GATA2 NFYB FOS TCF7L2 ZNF280D IBA57-AS1 CDC42BPA LINC01641
GH01I228092 Enhancer 0.5 dbSUPER 13.3 +72.8 72807 0.9 SMARCE1 POLR2A DPF2 ZNF560 IBA57-AS1 RPL23AP15 HIST3H2A HIST3H2BB MIR3620 ARF1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around IBA57-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for IBA57-AS1 Gene

Genomic Locations for IBA57-AS1 Gene
chr1:228,164,086-228,165,512
(GRCh38/hg38)
Size:
1,427 bases
Orientation:
Minus strand
chr1:228,351,787-228,353,213
(GRCh37/hg19)

Genomic View for IBA57-AS1 Gene

Genes around IBA57-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
IBA57-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for IBA57-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for IBA57-AS1 Gene

Proteins for IBA57-AS1 Gene

  • Protein details for IBA57-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    B1ANH7-IBAS1_HUMAN
    Recommended name:
    Putative uncharacterized protein IBA57-AS1
    Protein Accession:
    B1ANH7

    Protein attributes for IBA57-AS1 Gene

    Size:
    110 amino acids
    Molecular mass:
    12198 Da
    Quaternary structure:
    No Data Available

neXtProt entry for IBA57-AS1 Gene

Post-translational modifications for IBA57-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for IBA57-AS1 Gene

Domains & Families for IBA57-AS1 Gene

Protein Domains for IBA57-AS1 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with IBA57-AS1: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for IBA57-AS1 Gene

Function for IBA57-AS1 Gene

Phenotypes From GWAS Catalog for IBA57-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for IBA57-AS1 Gene

Localization for IBA57-AS1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for IBA57-AS1 gene
Compartment Confidence
extracellular 2
mitochondrion 2
nucleus 1
cytosol 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for IBA57-AS1 Gene

Pathways & Interactions for IBA57-AS1 Gene

SuperPathways for IBA57-AS1 Gene

No Data Available

Interacting Proteins for IBA57-AS1 Gene

Gene Ontology (GO) - Biological Process for IBA57-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for IBA57-AS1 Gene

Drugs & Compounds for IBA57-AS1 Gene

No Compound Related Data Available

Transcripts for IBA57-AS1 Gene

mRNA/cDNA for IBA57-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for IBA57-AS1 Gene

No ASD Table

Relevant External Links for IBA57-AS1 Gene

GeneLoc Exon Structure for
IBA57-AS1
ECgene alternative splicing isoforms for
IBA57-AS1

Expression for IBA57-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for IBA57-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for IBA57-AS1 Gene

This gene is overexpressed in Testis (x11.7).
genes like me logo Genes that share expression patterns with IBA57-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for IBA57-AS1 Gene

Orthologs for IBA57-AS1 Gene

Evolution for IBA57-AS1 Gene

ENSEMBL:
Gene Tree for IBA57-AS1 (if available)
TreeFam:
Gene Tree for IBA57-AS1 (if available)

No data available for Orthologs for IBA57-AS1 Gene

Paralogs for IBA57-AS1 Gene

No data available for Paralogs for IBA57-AS1 Gene

Variants for IBA57-AS1 Gene

Sequence variations from dbSNP and Humsavar for IBA57-AS1 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1035428169 likely-pathogenic, Multiple mitochondrial dysfunctions syndrome 3 228,165,983(-) G/A/T upstream_transcript_variant
rs13375853 benign, likely-benign, not specified, Multiple mitochondrial dysfunctions syndrome 3, Spastic paraplegia 74, autosomal recessive 228,166,080(-) C/G/T upstream_transcript_variant
rs376235022 likely-benign, not specified 228,166,020(-) C/T upstream_transcript_variant
rs547119740 likely-benign, not specified 228,166,116(-) G/C upstream_transcript_variant
rs762720562 likely-benign, not specified 228,165,978(-) C/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for IBA57-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv839n54 CNV loss 21841781
esv32853 CNV gain 17666407
nsv1160102 CNV deletion 26073780
nsv523935 CNV loss 19592680
nsv826908 CNV gain 20364138
nsv827019 CNV loss 20364138
nsv952137 CNV deletion 24416366

Variation tolerance for IBA57-AS1 Gene

Gene Damage Index Score: 2.68; 46.01% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for IBA57-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
IBA57-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for IBA57-AS1 Gene

Disorders for IBA57-AS1 Gene

Additional Disease Information for IBA57-AS1

No disorders were found for IBA57-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for IBA57-AS1 Gene

Publications for IBA57-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 58
  2. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory SG … Prigmore E (Nature 2006) 4 58

Products for IBA57-AS1 Gene

Sources for IBA57-AS1 Gene

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