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Aliases & Descriptions for IARS
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases EC 6.1.1.5 3 FLJ20736 2 IARS1 1 , 2 ILERS 2 ILRS 1 , 2 IRS 2 , 3 IleRS 3 PRO0785 2
Descriptions Isoleucine--tRNA ligase 3 isoleucine tRNA ligase 1, cytoplasmic 2 isoleucine tRNA synthetase 2 isoleucyl-tRNA synthetase 2
Search outside databases for aliases for IARS genePrevious GC identifers: GC09M085799 GC09M086700 GC09M088271 GC09M090314 GC09M092052
Summaries for IARS (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for IARS : Aminoacyl-tRNA synthetases catalyze the aminoacylation of tRNA by their cognate amino acid. Becauseof their central role in linking amino acids with nucleotide triplets contained in tRNAS,aminoacyl-tRNA synthetases are thought to be among the first proteins that appeared in evolution.Isoleucine-tRNA synthetase belongs to the class-I aminoacyl-tRNA synthetase family and has beenidentified as a target of autoantibodies in the autoimmune disease polymyositis/dermatomyositis.Two alternatively spliced variants have been isolated that represent alternate 5' UTRs.[provided by RefSeq] Gene Wiki entry for IARS
Genomic Location for IARS
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the IARS gene Entrez Gene cytogenetic band: 9q21 Ensembl cytogenetic band: 9q22.31 HGNC cytogenetic band: 9q21 IARS Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 9 GeneLoc Exon Structure
GeneLoc location for GC09M094012:
(about GC identifiers )
Start:
94,012,446 bp from pter
End:
94,095,859 bp from pter
Size:
83,414 bases
Orientation:
minus strand
RefSeq DNA sequence: NC_000009.10 NT_008470.18 Proteins for IARS
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: SYIC_HUMAN, P41252 (See
protein sequence )Recommended Name: Isoleucyl-tRNA synthetase, cytoplasmic Size : 1262 amino acids; 144498 Da
Subunit : Part of a multisubunit complex that groups tRNA ligases for Arg, Asp, Glu, Gln, Ile, Leu,Lys, Met and Pro
Subcellular location : Cytoplasm
Secondary accessions : A8KAE9 Q5TCD0 Q7Z3T4 Q9H588
Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (2 alternative transcripts):
NP_002152.2 NP_038203.2 ENSEMBL proteins: ENSP00000364778 ENSP00000364780 ENSP00000378922 ENSP00000364783 ENSP00000364794 ENSP00000364811 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 2 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for IARS: Assays for IARS:
Protein
Domains/ Families for IARS(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P41252 ProtoNet protein and cluster: P41252
3 Blocks protein families : IPB002300 Aminoacyl-tRNA synthetase IPB002301 Isoleucyl-tRNA synthetase signature IPB013155 tRNA synthetase UniProtKB/Swiss-Prot: SYIC_HUMAN, P41252 Similarity : Belongs to the class-I aminoacyl-tRNA synthetase family
Gene Function for IARS
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_013417 Applied Biosystems Silencer ® siRNAs for IARS Sigma-Aldrich siRNA for IARS Sigma-Aldrich shRNA for IARS Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_002161                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_002161                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_002161  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_013417 UniProtKB/Swiss-Prot: SYIC_HUMAN, P41252 Catalytic activity : ATP + L-isoleucine + tRNA(Ile) = AMP + diphosphate + L-isoleucyl-tRNA(Ile)Enzyme Number (IUBMB): EC 6.1.1.5
Genatlas biochemistry entry for IARS :isoleucyl-tRNA synthetase,target of autoantibodies in the autoimmune diseasepolymyositis/dermatomyositis 4 Gene Ontology (GO) molecular function terms (links to tree view) :
About this table
Pathways & Interactions for IARS
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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2 Sigma-Aldrich "Your Favorite Gene" Pathways for IARS (Your Favorite Gene powered by Ingenuity) Gene Network CentralTM Interacting Genes and Proteins Network for IARS 5/25 Interacting proteins for IARS (ENSP00000364811 3 P41252 2 ) via UniProtKB, MINT, and/or STRING (see all 25
)About this table 1 Gene Ontology (GO) biological process term (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0006428 isoleucyl-tRNA aminoacylation
IEA --
About this table
Drugs & Compounds for IARS (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for IARS 4 Novoseek chemical compound relationships for IARS gene
About this table
Transcripts for IARS(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
Tagged/untagged cDNA clones from
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_013417 Sigma-Aldrich siRNA for IARS Sigma-Aldrich shRNA for IARS Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_002161 NM_013417
REFSEQ mRNAs for IARS gene (2 alternative transcripts): NM_002161.4 NM_013417.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_002161 NM_013417
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_002161                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_002161                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_002161  
Additional cDNA sequence: AB209234.1 AF113680.1 AK057920.1 AK123909.1 AK127087.1 AK293014.1 AK301272.1 AK308202.1 BC008318.1 BC065552.1 BX537417.1 BX537429.1 BX538109.1 BX647071.1 BX647236.1 BX647430.1 BX648567.1 CR608663.1 D28473.1 U04953.1
24/39 DOTS entries (see all 39
): DT.100886659 DT.91764782 DT.100011116 DT.91852124 DT.91930461 DT.455504 DT.95278997 DT.101985387 DT.92398647 DT.92031077 DT.87008011 DT.121158091 DT.91967980 DT.95278994 DT.95278999 DT.100886653 DT.100886662 DT.304867 DT.91764781 DT.92337040 DT.100687050 DT.100886661 DT.100886664 DT.121158034
1 AceView cDNA sequence :CB045335
highest scoring ESTs for IARS :U04953 AL602153 AL602230 AU133063 AU134475 AU140501 AU142845 BE885577 BG106039 BG176735
Unigene Cluster for IARS: Isoleucyl-tRNA synthetase Hs.445403 [show with all ESTs ] Unigene Representative Sequence: NM_013417 GeneLoc Exon Structure 5/10 Alternative Splicing Database (ASD) splice patterns (SP) for IARS (see all 10
) ExUns: 1a · 1b · 1c ^ 2 ^ 3 ^ 4 ^ 5a · 5b ^ 6a · 6b ^ 7a · 7b ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 ^ 14 ^ 15 ^ 16 ^ 17 ^ 18 ^ 19 ^ 20 ^ 21a · SP1 :     -             -                                 -     SP2 :                 -                                 -     SP3 :             -     -                                 -     SP4 :     -     -         -                                 -     SP5 :                                                    
ExUns: 21b ^ 22a · 22b ^ 23a · 23b ^ 24a · 24b ^ 25 ^ 26a · 26b ^ 27 ^ 28 ^ 29 ^ 30 ^ 31 ^ 32a · 32b ^ 33a · 33b ^ 34 ^ 35 ^ 36a · 36b SP1 : -   -     -     -                               -       SP2 : -   -     -     -                               -       SP3 : -   -     -     -                       -   -       -       SP4 : -   -     -     -                               -       SP5 :                                              
About this scheme ECgene alternative splicing isoforms for IARS 6 Ensembl transcripts including schematic representations : ENST00000375627
ENST00000375629
ENST00000395554
ENST00000375632
ENST00000375643
ENST00000375660
Expression for IARS
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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IARS expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for IARS 1 / 2 / 3
3 probe-sets matching IARS gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: TTGGGAGCAGSOURCE GeneReport for Unigene cluster: Hs.445403 Expression variation in blood from EXPOLDB for IARS
Orthologs for IARS
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for IARS gene from 5/21 species (see all 21
)
About this table Species with no ortholog for IARS ENSEMBL Gene Tree for IARS Paralogs for IARS (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for IARS gene VARS 2 IARS2 2 VARS2 2
SNPs/Variants for IARS (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for IARS (up to first 250kb)
Disorders & Mutations for IARS
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 600709
Medical News for IARS (Possibly Related Articles in
Doctor's Guide )
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Publications for IARS (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/31 PubMed articles for IARS gene (see all 31
):
Search for IARS
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing IARS
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing IARS
(According to HUGE )
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--
Specialized Databases showing IARS (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for IARS (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for IARS:
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