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Aliases & Descriptions for IAPP
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| AMYLIN 1, 2 | | Amylin 3 | | DAP 1, 2, 3 | | IAP 1, 2 |
| | | Descriptions |
|---|
| Diabetes-associated peptide 3 | | Insulinoma amyloid peptide 3 | Islet amyloid polypeptide (diabetes-associated peptide; amylin) 2 | | islet amyloid polypeptide 2 |
|
| | Search outside databases for aliases for IAPP genePrevious GC identifers: GC12P021811 GC12P021527 GC12P021426 |
Summaries for IAPP(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for IAPP: Islet, or insulinoma, amyloid polypeptide is commonly found in pancreatic islets of patients suffering diabetes mellitus type II, or harboring an insulinoma. While the assosciation of amylin with the development of type II diabetes has been known for some time, a direct causative role for amylin has been harder to establish. Studies suggest that amylin, like the related beta-amyloid (Abeta) associated with Alzheimer's disease, can induce apoptotic cell-death in particular cultured cells, an effect that may be relevant to the development of type II diabetes. [provided by RefSeq] UniProtKB/Swiss-Prot: IAPP_HUMAN, P10997Function: Selectively inhibits insulin-stimulated glucose utilization and glycogen deposition in muscle, while not affecting adipocyte glucose metabolismGene Wiki entry for IAPP (Amylin) |
Genomic Location for IAPP
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the IAPP gene 
Entrez Gene cytogenetic band: 12p12.3-p12.1 Ensembl cytogenetic band: 12p12.1 HGNC cytogenetic band: 12p12.1IAPP Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 12 GeneLoc Exon Structure GeneLoc location for GC12P021417:
(about GC identifiers)
Start:
|
21,417,085 bp from pter |
End:
|
21,423,683 bp from pter |
Size:
|
6,599 bases |
Orientation:
|
plus strand |
RefSeq DNA sequence:- NC_000012.10 NT_009714.16
| Proteins for IAPP
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: IAPP_HUMAN, P10997 (See
protein sequence)Recommended Name: Islet amyloid polypeptide precursor Size: 89 amino acids; 9806 Da
Subcellular location: Secreted
PDB structures from and Proteopedia :1KUW (3D)
 2G48 (3D)
 2KB8 (3D)
 
Secondary accessions: Q14598REFSEQ proteins: NP_000406.1
ENSEMBL proteins: ENSP00000240652
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
3 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for IAPP: Assays for IAPP: | Protein
Domains/ Families for IAPP(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P10997
ProtoNet protein and cluster: P10997 1 Blocks protein family: IPB000443 Islet amyloid protein (amylin) signature
UniProtKB/Swiss-Prot: IAPP_HUMAN, P10997Similarity: Belongs to the calcitonin family | Gene Function for IAPP
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_000415
Applied Biosystems Silencer® siRNAs for IAPP
Sigma-Aldrich siRNA for IAPP  Sigma-Aldrich shRNA for IAPP  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_000415                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_000415                                  untagged cDNA clone in CMV expression vector: NM_000415 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_000415
UniProtKB/Swiss-Prot: IAPP_HUMAN, P10997Function: Selectively inhibits insulin-stimulated glucose utilization and glycogen deposition in muscle, while not affecting adipocyte glucose metabolismGenatlas biochemistry entry for IAPP:islet amyloid polypeptide5 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Iapp):
1 Gene Ontology (GO) molecular function term (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0005179 | hormone activity |
IEA | -- | About this table | Pathways & Interactions for IAPP
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
Gene Network CentralTM Interacting Genes and Proteins Network for IAPP 
5/39 Interacting proteins for IAPP (ENSP000002406523) via UniProtKB, MINT, and/or STRING (see all 39
)About this table
5/6 Gene Ontology (GO) biological process terms (links to tree view) (see all 6
): About this table
|
Drugs & Compounds for IAPP(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for IAPP 10/36 Novoseek chemical compound relationships for IAPP gene (see all 36
)
| Compound |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| i-app |
95.66 |
321 |
10907112 (10), 7935487 (7), 1541234 (6), 7802654 (6) (see all 91) |
| ac 187 |
87.47 |
7 |
8882637 (2), 10433998 (1), 12611974 (1), 16492540 (1) |
| amylinamide |
75.32 |
3 |
1646609 (3) |
| thioflavin t |
71.73 |
5 |
9568695 (1), 16884500 (1), 11374584 (1), 19100955 (1) |
| liraglutide |
71.21 |
3 |
16625817 (1), 18794593 (1), 15340100 (1) |
| glucose |
69.44 |
263 |
10946889 (8), 1860552 (7), 8163050 (6), 1541239 (6) (see all 99) |
| incretin |
66.30 |
11 |
17367252 (2), 7692203 (2), 16751350 (1), 17272793 (1) (see all 9) |
| enterostatin |
65.24 |
4 |
9208352 (1), 15146610 (1), 15107726 (1), 8697060 (1) |
| c-peptide |
64.66 |
26 |
9212327 (4), 15057546 (2), 18624122 (2), 9223392 (1) (see all 19) |
| tesaglitazar |
58.35 |
1 |
16627399 (1) |
About this table
2 PharmGKB drug compound relationships for IAPP geneAbout this table
|
Transcripts for IAPP(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_000415
Sigma-Aldrich siRNA for IAPP  Sigma-Aldrich shRNA for IAPP  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_000415 REFSEQ mRNAs for IAPP gene: NM_000415.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_000415               OriGene GFP tagged cDNA clone in CMV expression vector: NM_000415                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_000415                                  untagged cDNA clone in CMV expression vector: NM_000415  Additional cDNA sequence: DQ516082.1 J04422.1 X14904.1 X14905.1 7 DOTS entries: DT.95293617 DT.121183677 DT.100779782 DT.100779779 DT.429747 DT.99931396 DT.92435879 24/300 AceView cDNA sequences (see all 300
):BQ477320 BM509215 BU069957 CA943747 BI712710 BQ548622 BU947587 CB068861 BM263836 BM857649 CA942651 BM313621 CA952530 BU787662 X14904 BM512290 BI711363 BI324997 BM314212 CA776720 BQ478162 CB177247 CA776491 BM311687
highest scoring ESTs for IAPP:AA429852 AA446156 AW582904 AW582958 BG187739 BG192865 BG215756 BG654456 BG655075 BG655484 Unigene Cluster for IAPP: Islet amyloid polypeptide Hs.46835 [show with all ESTs]Unigene Representative Sequence: NM_000415
GeneLoc Exon Structure
3 Alternative Splicing Database (ASD) splice patterns (SP) for IAPP
| ExUns: | 1a | · | 1b | ^ | 2a | · | 2b | ^ | 3 | ^ | 4a | · | 4b | |
| SP1: | |   | |   | - |   | |   | - |   | |   | |   | |
| SP2: | |   | |   | - |   | |   | |   | |   | |   | |
| SP3: | |   | |   | |   | |   | - |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for IAPP
1 Ensembl transcript including schematic representation: ENST00000240652
|
Expression for IAPP
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| IAPP expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for IAPP
1 / 2 / 3 3 probe-sets matching IAPP gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: --
SOURCE GeneReport for Unigene cluster: Hs.46835
Expression variation in blood from EXPOLDB for IAPP |
Orthologs for IAPP
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for IAPP gene from 5 species
About this table Species with no ortholog for IAPP
ENSEMBL Gene Tree for IAPP | Paralogs for IAPP(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| -- |
SNPs/Variants for IAPP(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
| -- |
Disorders & Mutations for IAPP
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 147940
UniProtKB/Swiss-Prot: IAPP_HUMAN, P10997
IAPP is the peptide subunit of amyloid found in pancreatic islets of type 2 diabetic patients and in insulinomas10/60 Novoseek disease relationships for IAPP gene (see all 60
)
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| niddm |
77.67 |
112 |
9589246 (4), 12534323 (4), 7705017 (3), 1950379 (3) (see all 62) |
| hyperglycemia |
69.22 |
31 |
8842609 (2), 1534057 (1), 16492545 (1), 17617279 (1) (see all 24) |
| amyloid deposition |
66.31 |
13 |
1541234 (2), 8111613 (1), 12941771 (1), 12706321 (1) (see all 10) |
| insulinoma |
64.00 |
28 |
8317551 (3), 14507315 (3), 12941771 (2), 9166666 (1) (see all 19) |
| insulin resistance |
62.89 |
52 |
8967027 (3), 8877314 (2), 2204154 (2), 9814997 (2) (see all 39) |
| hypoglycemia |
61.81 |
12 |
16492545 (2), 1787825 (2), 16492543 (2), 8772580 (1) (see all 8) |
| hyperglucagonemia |
60.84 |
5 |
12384827 (2), 8842609 (2), 11979398 (1) |
| diabetes mellitus |
57.45 |
34 |
8152488 (2), 11772274 (2), 1737562 (1), 7594773 (1) (see all 29) |
| amyloidosis |
55.23 |
12 |
9568695 (2), 19266159 (1), 15878744 (1), 8296225 (1) (see all 11) |
| impaired glucose tolerance |
54.69 |
14 |
10946889 (4), 9568698 (2), 1756902 (1), 8877314 (1) (see all 8) |
About this table
1 PharmGKB disease relationship for IAPP geneAbout this table
Human Gene Mutation Database: IAPP Genetic Association Database: IAPP Human Genome Epidemiology Navigator: IAPP (6 documents)
|
Medical News for IAPP(Possibly Related Articles in
Doctor's Guide)
About This Section
| |
Publications for IAPP (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/597 PubMed articles for IAPP gene (see all 597
):- Missense mutation of amylin gene (S20G) in Japanese NIDDM patients. (PubMed id 8772735)1, 3, 4, 6 Sakagashira S.... Nanjo K. (1996)
- Characterization of the human islet amyloid polypeptide/amylin gene transcripts: identification of a new polyadenylation site. (PubMed id 1282806)1, 3, 4 Hoeppener J.W.M....Jansz H.S. (1992)
- Islet amyloid polypeptide: structure and upstream sequences of the IAPP gene in rat and man. (PubMed id 2223885)1, 3, 4 van Mansfeld A.D.M.... Jansz H.S. (1990)
- Islet amyloid polypeptide gene promoter polymorphisms are not associated with Type 2 diabetes or with the severity of islet amyloidosis. (PubMed id 15878744)1, 3, 6 Esapa C....Clark A. (2005)
- S20G mutation of the amylin gene is associated with a lower body mass index in Korean type 2 diabetic patients. (PubMed id 12706321)1, 3, 6 Cho Y.M....Lee H.K. (2003)
- Polymorphism in intron 2 of islet amyloid polypeptide gene is associated with lower low-density lipoprotein cholesterol in nondiabetic subjects and in type 2 diabetic patients. (PubMed id 12588049)1, 3, 6 Rojas I....Novials A. (2002)
- Solution structures of calcitonin-gene-related-peptide analogues of calcitonin-gene-related peptide and amylin. (PubMed id 2039456)1, 3, 4 Hubbard J.A.M....Price N.C. (1991)
- Amylin gene promoter mutations predispose to Type 2 diabetes in New Zealand Maori. (PubMed id 12679865)3, 6 Poa N.R....Edgar P.F. (2003)
- The islet amyloid polypeptide (amylin) gene S20G mutation in Chinese subjects: evidence for associations with type 2 diabetes and cholesterol levels. (PubMed id 11318791)3, 6 Lee S.C....Chan J.C. (2001)
- Role of S20G mutation of amylin gene in insulin secretion, insulin sensitivity, and type II diabetes mellitus in Taiwanese patients. (PubMed id 9794116)3, 4 Chuang L.M.... Lin B.J. (1998)
|
Search for IAPP
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing IAPP
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing IAPP
(According to HUGE)
About This Section
| -- |
Specialized Databases showing IAPP(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| Name | Description |
| Wikipedia | http://en.wikipedia.org/wiki/Amylin |
|
| | | About This Section
| --
| Services for IAPP(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for IAPP:

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Incremental update: 13 Oct 2009
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