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Aliases for HYPM Gene

Aliases for HYPM Gene

  • Huntingtin Interacting Protein M 2 3
  • Huntingtin Yeast Partner M 3 4
  • CXorf27 3 4
  • Chromosome X Open Reading Frame 27 2
  • Huntingtin-Interacting Protein M 3
  • HIP17 3

External Ids for HYPM Gene

Previous Symbols for HYPM Gene

  • CXorf27

Summaries for HYPM Gene

Entrez Gene Summary for HYPM Gene

  • This gene encodes a protein shown to interact with huntingtin, which contains an expanded polyglutamine tract in individuals with Huntington's disease (PMID: 9700202). [provided by RefSeq, Aug 2011]

GeneCards Summary for HYPM Gene

HYPM (Huntingtin Interacting Protein M) is a Protein Coding gene.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HYPM Gene

Genomics for HYPM Gene

Genomic Location for HYPM Gene

Start:
37,990,817 bp from pter
End:
37,991,317 bp from pter
Size:
501 bases
Orientation:
Plus strand

Genomic View for HYPM Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for HYPM Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HYPM Gene

No data available for Regulatory Elements for HYPM Gene

Proteins for HYPM Gene

  • Protein details for HYPM Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    O75409-HYPM_HUMAN
    Recommended name:
    Huntingtin-interacting protein M
    Protein Accession:
    O75409
    Secondary Accessions:
    • A1A4D3

    Protein attributes for HYPM Gene

    Size:
    117 amino acids
    Molecular mass:
    13442 Da
    Quaternary structure:
    • May interact with the N-terminus of HD
    SequenceCaution:
    • Sequence=AAC26851.1; Type=Erroneous initiation; Evidence={ECO:0000305};

neXtProt entry for HYPM Gene

Proteomics data for HYPM Gene at MOPED

Post-translational modifications for HYPM Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for HYPM Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for HYPM Gene

Domains for HYPM Gene

Protein Domains for HYPM Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with HYPM: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HYPM Gene

Function for HYPM Gene

Gene Ontology (GO) - Molecular Function for HYPM Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
GO:0046982 protein heterodimerization activity IEA --
genes like me logo Genes that share ontologies with HYPM: view

miRNA for HYPM Gene

miRTarBase miRNAs that target HYPM

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for HYPM Gene

Localization for HYPM Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HYPM Gene

Pathways for HYPM Gene

SuperPathways for HYPM Gene

No Data Available

Gene Ontology (GO) - Biological Process for HYPM Gene

None

No data available for Pathways by source for HYPM Gene

Transcripts for HYPM Gene

mRNA/cDNA for HYPM Gene

(1) REFSEQ mRNAs :
(9) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HYPM Gene

No ASD Table

Relevant External Links for HYPM Gene

GeneLoc Exon Structure for
HYPM
ECgene alternative splicing isoforms for
HYPM

Expression for HYPM Gene

mRNA expression in normal human tissues for HYPM Gene

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for HYPM Gene

genes like me logo Genes that share expressions with HYPM: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for HYPM Gene

Orthologs for HYPM Gene

This gene was present in the common ancestor of human and mouse.

Orthologs for HYPM Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia CXHXorf27 35
  • 99.43 (n)
  • 99.15 (a)
CXorf27 36
  • 99 (a)
OneToOne
mouse
(Mus musculus)
Mammalia 1700054O13Rik 16
1700054O13Rik 36
  • 48 (a)
OneToOne
Species with no ortholog for HYPM:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for HYPM Gene

ENSEMBL:
Gene Tree for HYPM (if available)
TreeFam:
Gene Tree for HYPM (if available)

Paralogs for HYPM Gene

No data available for Paralogs for HYPM Gene

Variants for HYPM Gene

Sequence variations from dbSNP and Humsavar for HYPM Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type MAF
rs5917519 -- 37,989,377(+) tgaaa(A/G)aagtc upstream-variant-2KB
rs5964273 -- 37,990,405(+) ACTAA(A/G)GAATA upstream-variant-2KB
rs6651635 -- 37,990,942(+) ACCGC(A/G)TTGTG missense, reference
rs6651812 -- 37,989,181(+) TTGAA(C/G)AGATA upstream-variant-2KB
rs17146924 -- 37,991,010(+) TTGCT(C/T)GATTG reference, synonymous-codon

Relevant External Links for HYPM Gene

HapMap Linkage Disequilibrium report
HYPM
Locus Specific Mutation Databases (LSDB)
CXorf27

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for HYPM Gene

Disorders for HYPM Gene

No disorders were found for HYPM Gene.

No data available for UniProtKB/Swiss-Prot for HYPM Gene

Publications for HYPM Gene

  1. Huntingtin interacts with a family of WW domain proteins. (PMID: 9700202) Faber P.W. … MacDonald M.E. (Hum. Mol. Genet. 1998) 2 3 4
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  3. Toward a confocal subcellular atlas of the human proteome. (PMID: 18029348) Barbe L. … Andersson-Svahn H. (Mol. Cell Proteomics 2008) 3
  4. Development and application of a DNA microarray-based yeast two-hybrid system. (PMID: 23275563) Suter B. … Wanker E.E. (Nucleic Acids Res. 2013) 3
  5. The palmitoyl acyltransferase HIP14 shares a high proportion of interactors with huntingtin: implications for a role in the pathogenesis of Huntington's disease. (PMID: 24705354) Butland S.L. … Hayden M.R. (Hum. Mol. Genet. 2014) 3

Products for HYPM Gene

Sources for HYPM Gene

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