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HUS1B Gene

protein-coding   GIFtS: 46
GCID: GC06M000655

HUS1 Checkpoint Homolog B (S. Pombe)

(Previous name: HUS1 (S. pombe) checkpoint homolog b)
  See related diseases
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
HUS1 Checkpoint Homolog B (S. Pombe)1 2
hHUS1B2 3
HUS1 (S. Pombe) Checkpoint Homolog B1
Checkpoint Protein HUS1B2

External Ids:    HGNC: 164851   Entrez Gene: 1354582   Ensembl: ENSG000001889967   OMIM: 6097135   UniProtKB: Q8NHY53   

Export aliases for HUS1B gene to outside databases

Previous GC identifers: GC06M000646 GC06M000600


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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Entrez Gene summary for HUS1B Gene:
The protein encoded by this gene is most closely related to HUS1, a component of a cell cycle checkpoint protein
complex involved in cell cycle arrest in response to DNA damage. This protein can interact with the check point
protein RAD1 but not with RAD9. Overexpression of this protein has been shown to induce cell death, which
suggests a related but distinct role of this protein, as compared to the HUS1. (provided by RefSeq, Jul 2008)

GeneCards Summary for HUS1B Gene:
HUS1B (HUS1 checkpoint homolog b (S. pombe)) is a protein-coding gene. Diseases associated with HUS1B include esophagitis, and adenocarcinoma. An important paralog of this gene is HUS1.




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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Regulatory elements:
   Regulatory transcription factor binding sites in the HUS1B gene promoter:
         GR   Tal-1   C/EBPalpha   MEF-2A   E2F   E2F-1   FOXO1a   aMEF-2   GR-alpha   FOXO1   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidHUS1B promoter sequence
   Search Chromatin IP Primers for HUS1B

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat HUS1B


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 6p25.3   Ensembl cytogenetic band:  6p25.3   HGNC cytogenetic band: 6p25.3

HUS1B Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
HUS1B gene location

GeneLoc information about chromosome 6         GeneLoc Exon Structure

GeneLoc location for GC06M000655:  view genomic region     (about GC identifiers)

Start:
655,939 bp from pter      End:
656,964 bp from pter
Size:
1,026 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, Cloud-Clone Corp, and/or others.)
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UniProtKB/Swiss-Prot: HUS1B_HUMAN, Q8NHY5 (See protein sequence)
Recommended Name: Checkpoint protein HUS1B  
Size: 278 amino acids; 30982 Da
Subunit: Interacts with RAD1 and RAD9B
Secondary accessions: Q5T4Z2

Explore the universe of human proteins at neXtProt for HUS1B: NX_Q8NHY5

Explore proteomics data for HUS1B at MOPED

Post-translational modifications: 

  • Modification sites at neXtProt
  • Modification sites at PhosphoSitePlus

  • See HUS1B Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins: NP_683762.2  
    ENSEMBL proteins: 
     ENSP00000370293  

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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    2 InterPro protein domains:
     IPR007150 Hus1/Mec3
     IPR016580 Cell_cycle_HUS1

    Graphical View of Domain Structure for InterPro Entry Q8NHY5

    ProtoNet protein and cluster: Q8NHY5

    UniProtKB/Swiss-Prot: HUS1B_HUMAN, Q8NHY5
    Similarity: Belongs to the HUS1 family


    HUS1B for domains           About GeneDecksing


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Animal Models:
       inGenious Targeting Laboratory: Let us create your new Knockout/Knockin mouse model for HUS1B
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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    nucleus2
    cytosol1
    extracellular1
    mitochondrion1
    peroxisome1

    Gene Ontology (GO): 2 cellular component terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005730nucleolus IEA--
    GO:0030896checkpoint clamp complex IEA--

    HUS1B for ontologies           About GeneDecksing


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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    SuperPaths for HUS1B About    
    See pathways by source

    SuperPathContained pathways About
    1p53 signaling pathway
    DNA damage response0.41


    1 BioSystems Pathway for HUS1B
        DNA damage response


        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for HUS1B
    Interactions:

        GeneGlobe Interaction Network for HUS1B

    STRING Interaction Network Preview (showing 5 interactants - click image to see 25)

    Selected Interacting proteins for HUS1B (Q8NHY53 ENSP000003702934) via UniProtKB, MINT, STRING, and/or I2D (see all 26)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    RAD9AQ996383, ENSP000003113604I2D: score=2 STRING: ENSP00000311360
    HUS1O609213, ENSP000002587744I2D: score=1 STRING: ENSP00000258774
    RAD1O606713, ENSP000003408794I2D: score=1 STRING: ENSP00000340879
    RAD9BQ6WBX83, ENSP000003764404I2D: score=2 STRING: ENSP00000376440
    DNAJC7ENSP000004064634STRING: ENSP00000406463
    About this table

    Gene Ontology (GO): 2 biological process terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0000077DNA damage checkpoint IEA--
    GO:0006281DNA repair IEA--

    HUS1B for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for HUS1B



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, and/or QIAGEN )
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    REFSEQ mRNAs for HUS1B gene: 
    NM_148959.3  

    1 Ensembl transcript including schematic representation, and UCSC links where relevant:
    ENST00000380907(uc003mtg.3)
    miRNA
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    hsa-miR-3065-5p
    SwitchGear 3'UTR luciferase reporter plasmidHUS1B 3' UTR sequence
    Inhib. RNA
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      QuantiFast Probe-based Assays in human, mouse, rat HUS1B

    3 AceView cDNA sequences:

    NM_148959 AF508547 AI446694 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    HUS1B expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: GTGCAAGTGC
    HUS1B Expression
    About this image

    HUS1B Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    HUS1B Protein Expression

    UniProtKB/Swiss-Prot: HUS1B_HUMAN, Q8NHY5
    Tissue specificity: Expressed strongly in testis, less in spleen, thymus, prostate, colon and leukocytes

        Custom PCR Arrays for HUS1B
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for HUS1B

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of animals.

    Orthologs for HUS1B gene from Selected species (see all 10)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Hus1b1 , 5 Hus1 homolog b (S. pombe)1, 5 74.55(n)1
    65.09(a)1
      13 (13.33 cM)5
    2105541  NM_153072.21  NP_694712.11 
     309465735 
    chicken
    (Gallus gallus)
    Aves --
    Uncharacterized protein
    49(a)
    1 → many
    2(55403939-55410942)
    lizard
    (Anolis carolinensis)
    Reptilia --
    Uncharacterized protein
    44(a)
    1 → many
    6(53962631-53984555)
    zebrafish
    (Danio rerio)
    Actinopterygii HUS16
    HUS1 checkpoint homolog (S. pombe)
    48(a)
    1 → many
    Zv9_NA426(10766-13534) ENSDARG00000061380
    fruit fly
    (Drosophila melanogaster)
    Insecta Hus1-like6
    Hus1-like
    26(a)
    1 → many
    3R(634058-637783)
    worm
    (Caenorhabditis elegans)
    Secernentea hus-16
    Protein HUS-1 (hus-1) mRNA, complete cds
    22(a)
    1 → many
    I(3698024-3699300) WBGene00002042


    ENSEMBL Gene Tree for HUS1B (if available)
    TreeFam Gene Tree for HUS1B (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for HUS1B gene
    HUS12  
    1 SIMAP similar gene for HUS1B using alignment to 1 protein entry:     HUS1B_HUMAN:
    HUS1

    HUS1B for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    3 SNPs for HUS1B    About this table    
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 6 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs171362391,2,4
    ----see VAR_0312072 mis40--------
    rs17668481,2,4
    ----see VAR_0312062 mis40--------
    rs12115541,2,4
    ----see VAR_0254972 mis40--------

    HapMap Linkage Disequilibrium report for HUS1B (655939 - 656964 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 5 variations for HUS1B:    About this table    
    Variant IDTypeSubtypePubMed ID
    nsv5169CNV Loss18451855
    nsv462609CNV Gain19166990
    nsv883361CNV Gain21882294
    esv581CNV CNV17122850
    essv22330CNV CNV17122850

    Human Gene Mutation Database (HGMD): HUS1B
    Site Specific Mutation Identification with PCR Assays
    Search QIAGEN SeqTarget long-range PCR primers for resequencing HUS1B
    DNA2.0 Custom Variant and Variant Library Synthesis for HUS1B

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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    OMIM gene information: 609713    OMIM disorders: --

    3 diseases for HUS1B:    
    About MalaCards
    esophagitis    adenocarcinoma    prostatitis


    HUS1B for disorders           About GeneDecksing

    Genetic Association Database (GAD): HUS1B
    Human Genome Epidemiology (HuGE) Navigator: HUS1B (1 document)

    Export disorders for HUS1B gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for HUS1B gene integrated from 10 sources:
    (articles sorted by number of sources associating them with HUS1B)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Identification and characterization of a paralog of human cell cycle checkpoint gene HUS1. (PubMed id 11944979)1, 2, 3 Hang H.... Lieberman H.B. (Genomics 2002)
    2. A Large-scale genetic association study of esophageal adenocarcinoma risk. (PubMed id 20453000)1, 4 Liu C.Y....Christiani D.C. (Carcinogenesis 2010)
    3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S.... Malek J. (Genome Res. 2004)
    4. The DNA sequence and analysis of human chromosome 6. (PubMed id 14574404)1, 2 Mungall A.J.... Beck S. (Nature 2003)
    5. Expression of mammalian paralogues of HRAD9 and Mrad9 checkpoint control genes in normal and cancerous testicular tissue. (PubMed id 14500360)1, 2 Hopkins K.M....Lieberman H.B. (Cancer Res. 2003)
    6. Linkage and association of successful aging to the 6q25 region in large Amish kindreds. (PubMed id 22773346)1 Edwards D.R....Scott W.K. (Age (Dordr) 2013)
    7. Identification and characterization of RAD9B, a paralog of the RAD9 checkpoint gene. (PubMed id 14611806)1 Dufault V.M.... Karnitz L.M. (Genomics 2003)
    8. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 135458 HGNC: 16485 AceView: HUS1B Ensembl:ENSG00000188996 euGenes: HUgn135458
    ECgene: HUS1B H-InvDB: HUS1B

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for HUS1B Pharmacogenomics, SNPs, Pathways
    ATLAS Chromosomes in Cancer entry for HUS1B Genetics and Cytogenetics in Oncology and Haematology

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for HUS1B gene:
    Search GeneIP for patents involving HUS1B

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, and ESI BIO, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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