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Aliases for HTT-AS Gene

Subcategory (RNA class) for HTT-AS Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for HTT-AS Gene

  • HTT Antisense RNA (Head To Head) 2 3
  • HTT Antisense RNA 1 (Non-Protein Coding) 2 3
  • HTT Antisense RNA 1 (Head To Head) 3
  • HTT Antisense RNA 1 2
  • HTT-AS1 3
  • HTTAS 3

External Ids for HTT-AS Gene

ORGUL Members for HTT-AS Gene

Previous HGNC Symbols for HTT-AS Gene

  • HTT-AS1

Summaries for HTT-AS Gene

GeneCards Summary for HTT-AS Gene

HTT-AS (HTT Antisense RNA (Head To Head)) is an RNA Gene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HTT-AS Gene

Genomics for HTT-AS Gene

Genomic Location for HTT-AS Gene

Start:
3,063,246 bp from pter
End:
3,074,514 bp from pter
Size:
11,269 bases
Orientation:
Minus strand

Genomic View for HTT-AS Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for HTT-AS Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HTT-AS Gene

No data available for Regulatory Elements for HTT-AS Gene

Proteins for HTT-AS Gene

Post-translational modifications for HTT-AS Gene

No Post-translational modifications

No data available for DME Specific Peptides for HTT-AS Gene

Domains for HTT-AS Gene

Gene Families for HTT-AS Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with HTT-AS: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HTT-AS Gene

Function for HTT-AS Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for HTT-AS Gene

Localization for HTT-AS Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HTT-AS Gene

Pathways for HTT-AS Gene

SuperPathways for HTT-AS Gene

No Data Available

Interacting Proteins for HTT-AS Gene

Gene Ontology (GO) - Biological Process for HTT-AS Gene

None

No data available for Pathways by source for HTT-AS Gene

Transcripts for HTT-AS Gene

mRNA/cDNA for HTT-AS Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HTT-AS Gene

No ASD Table

Relevant External Links for HTT-AS Gene

GeneLoc Exon Structure for
HTT-AS
ECgene alternative splicing isoforms for
HTT-AS

Expression for HTT-AS Gene

mRNA expression in normal human tissues for HTT-AS Gene

genes like me logo Genes that share expressions with HTT-AS: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for HTT-AS Gene

Orthologs for HTT-AS Gene

Evolution for HTT-AS Gene

ENSEMBL:
Gene Tree for HTT-AS (if available)
TreeFam:
Gene Tree for HTT-AS (if available)

No data available for Orthologs for HTT-AS Gene

Paralogs for HTT-AS Gene

No data available for Paralogs for HTT-AS Gene

Variants for HTT-AS Gene

Sequence variations from dbSNP and Humsavar for HTT-AS Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type MAF
rs2471353 -- 3,064,337(+) gatcc(A/G)cctgc intron-variant
rs2515954 -- 3,065,334(-) gaacc(C/T)gggag intron-variant
rs3846233 -- 3,067,224(-) ATCCT(C/T)TCTTC intron-variant
rs3846234 -- 3,067,275(-) TCTCT(C/T)TCTCC intron-variant
rs4690070 -- 3,065,404(+) cccgg(C/G)taatt intron-variant

Relevant External Links for HTT-AS Gene

HapMap Linkage Disequilibrium report
HTT-AS

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for HTT-AS Gene

Disorders for HTT-AS Gene

No disorders were found for HTT-AS Gene.

No data available for UniProtKB/Swiss-Prot for HTT-AS Gene

Publications for HTT-AS Gene

  1. A natural antisense transcript at the Huntington's disease repeat locus regulates HTT expression. (PMID: 21672921) Chung D.W. … Margolis R.L. (Hum. Mol. Genet. 2011) 2 3
  2. Roles of long noncoding RNAs in brain development, functional diversification and neurodegenerative diseases. (PMID: 23756188) Wu P. … Ji A. (Brain Res. Bull. 2013) 2 3
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3

Products for HTT-AS Gene

Sources for HTT-AS Gene

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