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Aliases for HTT-AS Gene

Subcategory (RNA class) for HTT-AS Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for HTT-AS Gene

  • HTT Antisense RNA (Head To Head) 2 3 5
  • HTT Antisense RNA 1 (Non-Protein Coding) 2 3
  • HTT Antisense RNA 1 (Head To Head) 3
  • HTT Antisense RNA 1 2
  • HTT-AS1 3
  • HTTAS 3

External Ids for HTT-AS Gene

Previous HGNC Symbols for HTT-AS Gene

  • HTT-AS1

Summaries for HTT-AS Gene

GeneCards Summary for HTT-AS Gene

HTT-AS (HTT Antisense RNA (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HTT-AS Gene

Genomics for HTT-AS Gene

Regulatory Elements for HTT-AS Gene

Enhancers for HTT-AS Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH04F003039 0.8 Ensembl ENCODE 15.7 +32.8 32807 3.8 SIN3A ARID4B ZBTB40 ZNF48 ZNF143 CREM SMAD5 CBFB CEBPB SP1 HTT-AS GRK4 GC04P003044 GC04M003004
GH04F003110 1.2 Ensembl ENCODE 11.9 -37.7 -37711 3.4 ESRRA PKNOX1 JUN RAD21 ZNF7 ZNF316 GATA3 CTBP1 POLR2A RCOR1 HTT HTT-AS RNU6-204P RNU7-33P MSANTD1 GC04M003105 GC04P003121
GH04F003037 0.9 Ensembl ENCODE 11.9 +36.5 36514 2.0 SOX13 CTCF SAP130 ARID4B ZNF2 RAD21 POLR2A ZNF143 ZNF207 SMC3 HTT HTT-AS GRK4 RNU7-33P GC04P003044 GC04M003004
GH04F003106 0.2 ENCODE 11.5 -33.1 -33098 2.8 HDGF ELF3 HDAC1 CBX3 PKNOX1 TBL1XR1 WRNIP1 SIN3A ARID4B ZNF48 RNU6-204P RNU7-33P HTT HTT-AS GC04M003105 GC04P003121
GH04F003134 0.2 ENCODE 11.3 -60.0 -60013 0.1 GATA3 PKNOX1 HTT HTT-AS GC04P003121 GC04M003145
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around HTT-AS on UCSC Golden Path with GeneCards custom track

Promoters for HTT-AS Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001235055 -486 3201 HDGF PKNOX1 MLX WRNIP1 ARID4B SIN3A DMAP1 YY1 ZNF207 ZNF143

Genomic Location for HTT-AS Gene

Chromosome:
4
Start:
3,063,246 bp from pter
End:
3,074,514 bp from pter
Size:
11,269 bases
Orientation:
Minus strand

Genomic View for HTT-AS Gene

Genes around HTT-AS on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HTT-AS Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HTT-AS Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HTT-AS Gene

Proteins for HTT-AS Gene

Post-translational modifications for HTT-AS Gene

No Post-translational modifications

No data available for DME Specific Peptides for HTT-AS Gene

Domains & Families for HTT-AS Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HTT-AS Gene

Function for HTT-AS Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HTT-AS Gene

Localization for HTT-AS Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HTT-AS Gene

Pathways & Interactions for HTT-AS Gene

SuperPathways for HTT-AS Gene

No Data Available

Interacting Proteins for HTT-AS Gene

Gene Ontology (GO) - Biological Process for HTT-AS Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HTT-AS Gene

Transcripts for HTT-AS Gene

mRNA/cDNA for HTT-AS Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HTT-AS Gene

No ASD Table

Relevant External Links for HTT-AS Gene

GeneLoc Exon Structure for
HTT-AS
ECgene alternative splicing isoforms for
HTT-AS

Expression for HTT-AS Gene

mRNA expression in normal human tissues for HTT-AS Gene

genes like me logo Genes that share expression patterns with HTT-AS: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for HTT-AS Gene

Orthologs for HTT-AS Gene

Evolution for HTT-AS Gene

ENSEMBL:
Gene Tree for HTT-AS (if available)
TreeFam:
Gene Tree for HTT-AS (if available)

No data available for Orthologs for HTT-AS Gene

Paralogs for HTT-AS Gene

No data available for Paralogs for HTT-AS Gene

Variants for HTT-AS Gene

Sequence variations from dbSNP and Humsavar for HTT-AS Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type
rs587777899 untested 3,074,929(+) GCAGC(A/C)GCAGC upstream-variant-2KB, reference, missense
rs10006977 -- 3,075,228(+) AGCCC(A/C)TGAGG intron-variant, upstream-variant-2KB
rs10009935 -- 3,075,310(+) TCCTC(C/T)CGCGA intron-variant, upstream-variant-2KB
rs10011412 -- 3,071,527(+) ctgtC(A/G)TACAC intron-variant
rs10014333 -- 3,071,629(+) cgaac(A/T)gtgtc intron-variant

Structural Variations from Database of Genomic Variants (DGV) for HTT-AS Gene

Variant ID Type Subtype PubMed ID
esv28565 CNV gain 19812545
esv3599420 CNV gain 21293372
nsv461163 CNV gain 19166990
nsv593437 CNV gain 21841781

Relevant External Links for HTT-AS Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HTT-AS

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HTT-AS Gene

Disorders for HTT-AS Gene

Relevant External Links for HTT-AS

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HTT-AS

No disorders were found for HTT-AS Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HTT-AS Gene

Publications for HTT-AS Gene

  1. Roles of long noncoding RNAs in brain development, functional diversification and neurodegenerative diseases. (PMID: 23756188) Wu P. … Ji A. (Brain Res. Bull. 2013) 2 3 64
  2. A natural antisense transcript at the Huntington's disease repeat locus regulates HTT expression. (PMID: 21672921) Chung D.W. … Margolis R.L. (Hum. Mol. Genet. 2011) 2 3 64
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64

Products for HTT-AS Gene

Sources for HTT-AS Gene

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