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Aliases for HTT-AS Gene

Subcategory (RNA class) for HTT-AS Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for HTT-AS Gene

  • HTT Antisense RNA (Head To Head) 2 3 5
  • HTT Antisense RNA 1 (Non-Protein Coding) 2 3
  • HTT Antisense RNA 1 (Head To Head) 3
  • HTT Antisense RNA 1 2
  • HTT-AS1 3
  • HTTAS 3

External Ids for HTT-AS Gene

Previous HGNC Symbols for HTT-AS Gene

  • HTT-AS1

Summaries for HTT-AS Gene

GeneCards Summary for HTT-AS Gene

HTT-AS (HTT Antisense RNA (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HTT-AS Gene

Genomics for HTT-AS Gene

Regulatory Elements for HTT-AS Gene

Enhancers for HTT-AS Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
- Elite enhancer/Elite enhancer-gene association

Enhancers around HTT-AS on UCSC Golden Path with GeneCards custom track

Promoters for HTT-AS Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

Genomic Location for HTT-AS Gene

3,063,246 bp from pter
3,074,514 bp from pter
11,269 bases
Minus strand

Genomic View for HTT-AS Gene

Genes around HTT-AS on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HTT-AS Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HTT-AS Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HTT-AS Gene

Proteins for HTT-AS Gene

Post-translational modifications for HTT-AS Gene

No Post-translational modifications

No data available for DME Specific Peptides for HTT-AS Gene

Domains & Families for HTT-AS Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HTT-AS Gene

Function for HTT-AS Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HTT-AS Gene

Localization for HTT-AS Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HTT-AS Gene

Pathways & Interactions for HTT-AS Gene

SuperPathways for HTT-AS Gene

No Data Available

Interacting Proteins for HTT-AS Gene

Gene Ontology (GO) - Biological Process for HTT-AS Gene


No data available for Pathways by source and SIGNOR curated interactions for HTT-AS Gene

Drugs & Compounds for HTT-AS Gene

No Compound Related Data Available

Transcripts for HTT-AS Gene

mRNA/cDNA for HTT-AS Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HTT-AS Gene

No ASD Table

Relevant External Links for HTT-AS Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for HTT-AS Gene

mRNA expression in normal human tissues for HTT-AS Gene

genes like me logo Genes that share expression patterns with HTT-AS: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for HTT-AS Gene

Orthologs for HTT-AS Gene

Evolution for HTT-AS Gene

Gene Tree for HTT-AS (if available)
Gene Tree for HTT-AS (if available)

No data available for Orthologs for HTT-AS Gene

Paralogs for HTT-AS Gene

No data available for Paralogs for HTT-AS Gene

Variants for HTT-AS Gene

Sequence variations from dbSNP and Humsavar for HTT-AS Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type
rs2471353 -- 3,064,337(+) gatcc(A/G)cctgc intron-variant
rs2515954 -- 3,065,334(-) gaacc(C/T)gggag intron-variant
rs3846233 -- 3,067,224(-) ATCCT(C/T)TCTTC intron-variant
rs3846234 -- 3,067,275(-) TCTCT(C/T)TCTCC intron-variant
rs7674896 -- 3,069,306(+) acacc(C/T)ggcta intron-variant

Structural Variations from Database of Genomic Variants (DGV) for HTT-AS Gene

Variant ID Type Subtype PubMed ID
esv28565 CNV gain 19812545
esv3599420 CNV gain 21293372
nsv461163 CNV gain 19166990
nsv593437 CNV gain 21841781

Relevant External Links for HTT-AS Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HTT-AS Gene

Disorders for HTT-AS Gene

Relevant External Links for HTT-AS

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for HTT-AS Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HTT-AS Gene

Publications for HTT-AS Gene

  1. Roles of long noncoding RNAs in brain development, functional diversification and neurodegenerative diseases. (PMID: 23756188) Wu P. … Ji A. (Brain Res. Bull. 2013) 2 3 65
  2. A natural antisense transcript at the Huntington's disease repeat locus regulates HTT expression. (PMID: 21672921) Chung D.W. … Margolis R.L. (Hum. Mol. Genet. 2011) 2 3 65
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 65

Products for HTT-AS Gene

Sources for HTT-AS Gene

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