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Aliases for HTRA4 Gene

Aliases for HTRA4 Gene

  • HtrA Serine Peptidase 4 2 3 5
  • High-Temperature Requirement Factor A4 4
  • EC 3.4.21.108 61
  • EC 3.4.21.- 4
  • EC 3.4.21 61

External Ids for HTRA4 Gene

Previous GeneCards Identifiers for HTRA4 Gene

  • GC08P038831
  • GC08P037364

Summaries for HTRA4 Gene

Entrez Gene Summary for HTRA4 Gene

  • This gene encodes a member of the HtrA family of proteases. The encoded protein contains a putative signal peptide, an insulin growth factor binding domain, a Kazal protease inhibitor domain, a conserved trypsin domain and a PDZ domain. Based on studies on other related family members, this enzyme may function as a secreted oligomeric chaperone protease to degrade misfolded secretory proteins. Other human HtrA proteins have been implicated in arthritis, tumor suppression, unfolded stress response, apoptosis, and aging. [provided by RefSeq, Oct 2008]

GeneCards Summary for HTRA4 Gene

HTRA4 (HtrA Serine Peptidase 4) is a Protein Coding gene. GO annotations related to this gene include serine-type endopeptidase activity and insulin-like growth factor binding. An important paralog of this gene is HTRA1.

UniProtKB/Swiss-Prot for HTRA4 Gene

  • Serine protease.

No data available for Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HTRA4 Gene

Genomics for HTRA4 Gene

Regulatory Elements for HTRA4 Gene

Enhancers for HTRA4 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08F038838 0.2 ENCODE 12.5 -134.2 -134237 2.0 JUND PLEKHA2 ENSG00000253645 HTRA4 TACC1 BRF2 ENSG00000253829 PIR61058 GC08P038829
GH08F038995 1 FANTOM5 ENCODE 12.2 +26.6 26648 10.8 HDGF PKNOX1 MLX ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 ZNF143 ADAM32 HTRA4 ENSG00000253645 PLEKHA2 ENSG00000272128 ADAM9 ENSG00000207199 GC08M039018
GH08F038830 0.6 ENCODE 12.2 -143.3 -143282 0.2 CTCF MXI1 SIN3A ARID4B MAX RAD21 RFX5 ZNF366 SCRT2 SMC3 PLEKHA2 ENSG00000253645 HTRA4 ADAM9 TM2D2 GC08P038829 PIR61058 ENSG00000253829
GH08F038862 1 Ensembl ENCODE 12.1 -109.1 -109149 4.8 PKNOX1 ARID4B SIN3A ZNF48 YY1 ZNF121 SLC30A9 ZNF143 ZNF263 SP5 PLEKHA2 ENSG00000253645 HTRA4 TACC1 PIR62535 GC08P038853
GH08F038855 1.1 Ensembl ENCODE 12 -117.4 -117449 1.8 HDGF CTCF ZIC2 RAD21 TEAD3 ZNF664 ZNF324 ZNF121 ZBTB48 SCRT2 PLEKHA2 ENSG00000253645 HTRA4 TACC1 GC08P038853 PIR62535
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around HTRA4 on UCSC Golden Path with GeneCards custom track

Promoters for HTRA4 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001900523 151 1001 RNF2 SUZ12 CBX2 MXD4 CEBPB POLR2A ZBTB33 NR2F6 ZBTB20

Genomic Location for HTRA4 Gene

Chromosome:
8
Start:
38,974,149 bp from pter
End:
38,988,662 bp from pter
Size:
14,514 bases
Orientation:
Plus strand

Genomic View for HTRA4 Gene

Genes around HTRA4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HTRA4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HTRA4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HTRA4 Gene

Proteins for HTRA4 Gene

  • Protein details for HTRA4 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P83105-HTRA4_HUMAN
    Recommended name:
    Serine protease HTRA4
    Protein Accession:
    P83105
    Secondary Accessions:
    • Q542Z4
    • Q6PF13

    Protein attributes for HTRA4 Gene

    Size:
    476 amino acids
    Molecular mass:
    50979 Da
    Quaternary structure:
    No Data Available

neXtProt entry for HTRA4 Gene

Selected DME Specific Peptides for HTRA4 Gene

Post-translational modifications for HTRA4 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for HTRA4 Gene

ENSEMBL proteins:
REFSEQ proteins:

Domains & Families for HTRA4 Gene

Gene Families for HTRA4 Gene

Suggested Antigen Peptide Sequences for HTRA4 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

P83105

UniProtKB/Swiss-Prot:

HTRA4_HUMAN :
  • Contains 1 IGFBP N-terminal domain.
  • Belongs to the peptidase S1C family.
Domain:
  • Contains 1 IGFBP N-terminal domain.
  • Contains 1 Kazal-like domain.
  • Contains 1 PDZ (DHR) domain.
Family:
  • Belongs to the peptidase S1C family.
genes like me logo Genes that share domains with HTRA4: view

Function for HTRA4 Gene

Molecular function for HTRA4 Gene

UniProtKB/Swiss-Prot Function:
Serine protease.

Enzyme Numbers (IUBMB) for HTRA4 Gene

Gene Ontology (GO) - Molecular Function for HTRA4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004175 endopeptidase activity IDA 18387192
GO:0004252 serine-type endopeptidase activity IEA --
GO:0005520 insulin-like growth factor binding IEA --
GO:0008233 peptidase activity IEA --
GO:0008236 serine-type peptidase activity IEA --
genes like me logo Genes that share ontologies with HTRA4: view
genes like me logo Genes that share phenotypes with HTRA4: view

Animal Models for HTRA4 Gene

MGI Knock Outs for HTRA4:

Animal Model Products

  • Taconic Biosciences Mouse Models for HTRA4

miRNA for HTRA4 Gene

miRTarBase miRNAs that target HTRA4

Inhibitory RNA Products

Flow Cytometry Products

No data available for Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for HTRA4 Gene

Localization for HTRA4 Gene

Subcellular locations from UniProtKB/Swiss-Prot for HTRA4 Gene

Secreted.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for HTRA4 Gene COMPARTMENTS Subcellular localization image for HTRA4 gene
Compartment Confidence
extracellular 4
lysosome 1
peroxisome 1
vacuole 1

Gene Ontology (GO) - Cellular Components for HTRA4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005576 extracellular region IEA --
genes like me logo Genes that share ontologies with HTRA4: view

Pathways & Interactions for HTRA4 Gene

SuperPathways for HTRA4 Gene

No Data Available

Gene Ontology (GO) - Biological Process for HTRA4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001558 regulation of cell growth IEA --
GO:0006508 proteolysis IDA 18387192
GO:0030512 negative regulation of transforming growth factor beta receptor signaling pathway ISS --
genes like me logo Genes that share ontologies with HTRA4: view

No data available for Pathways by source and SIGNOR curated interactions for HTRA4 Gene

Transcripts for HTRA4 Gene

mRNA/cDNA for HTRA4 Gene

Unigene Clusters for HTRA4 Gene

HtrA serine peptidase 4:
Representative Sequences:

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for HTRA4 Gene

No ASD Table

Relevant External Links for HTRA4 Gene

GeneLoc Exon Structure for
HTRA4
ECgene alternative splicing isoforms for
HTRA4

Expression for HTRA4 Gene

mRNA expression in normal human tissues for HTRA4 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for HTRA4 Gene

This gene is overexpressed in Lung (x6.7) and Adipose - Subcutaneous (x5.4).

Protein differential expression in normal tissues from HIPED for HTRA4 Gene

This gene is overexpressed in Cervix (53.9) and Placenta (15.1).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for HTRA4 Gene



Protein tissue co-expression partners for HTRA4 Gene

NURSA nuclear receptor signaling pathways regulating expression of HTRA4 Gene:

HTRA4

SOURCE GeneReport for Unigene cluster for HTRA4 Gene:

Hs.661014
genes like me logo Genes that share expression patterns with HTRA4: view

Primer Products

No data available for mRNA Expression by UniProt/SwissProt for HTRA4 Gene

Orthologs for HTRA4 Gene

This gene was present in the common ancestor of animals.

Orthologs for HTRA4 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia HTRA4 34 35
  • 99.65 (n)
dog
(Canis familiaris)
Mammalia LOC475580 34
  • 80.39 (n)
HTRA4 35
  • 71 (a)
OneToOne
cow
(Bos Taurus)
Mammalia HTRA4 34 35
  • 78.57 (n)
mouse
(Mus musculus)
Mammalia Htra4 34 16 35
  • 76.17 (n)
rat
(Rattus norvegicus)
Mammalia Htra4 34
  • 75.13 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia -- 35
  • 73 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia HTRA4 35
  • 55 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia HTRA4 35
  • 60 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia LOC100488607 34
  • 61.75 (n)
zebrafish
(Danio rerio)
Actinopterygii LOC100334257 34
  • 58.6 (n)
htra4 35
  • 52 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta HtrA2 35
  • 37 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 35
  • 39 (a)
OneToMany
Species where no ortholog for HTRA4 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for HTRA4 Gene

ENSEMBL:
Gene Tree for HTRA4 (if available)
TreeFam:
Gene Tree for HTRA4 (if available)

Paralogs for HTRA4 Gene

Paralogs for HTRA4 Gene

(3) SIMAP similar genes for HTRA4 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with HTRA4: view

Variants for HTRA4 Gene

Sequence variations from dbSNP and Humsavar for HTRA4 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type
rs10091297 -- 38,983,279(+) TGCCT(C/G)TAATC intron-variant, downstream-variant-500B
rs10091299 -- 38,980,929(+) TTTTA(A/C)CTTTT intron-variant, downstream-variant-500B
rs10095616 -- 38,982,141(+) CCATG(C/T)CTGGC intron-variant
rs10100527 -- 38,981,073(+) TTTTT(G/T)TTTTT intron-variant
rs10100530 -- 38,981,083(+) TTTTT(G/T)TTTTT intron-variant

Variation tolerance for HTRA4 Gene

Residual Variation Intolerance Score: 56.9% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 2.12; 38.64% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for HTRA4 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HTRA4

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for HTRA4 Gene

Disorders for HTRA4 Gene

Relevant External Links for HTRA4

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HTRA4

No disorders were found for HTRA4 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HTRA4 Gene

Publications for HTRA4 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  3. Human HtrA4 Expression Is Restricted to the Placenta, Is Significantly Up-Regulated in Early-Onset Preeclampsia, and High Levels of HtrA4 Cause Endothelial Dysfunction. (PMID: 25946029) Singh H. … Nie G. (J. Clin. Endocrinol. Metab. 2015) 3 64
  4. Functional antagonism between high temperature requirement protein A (HtrA) family members regulates trophoblast invasion. (PMID: 25002585) Chen Y.Y. … Chen H. (J. Biol. Chem. 2014) 3 64
  5. High-temperature requirement protein A4 (HtrA4) suppresses the fusogenic activity of syncytin-1 and promotes trophoblast invasion. (PMID: 22778138) Wang L.J. … Chen H. (Mol. Cell. Biol. 2012) 3 64

Products for HTRA4 Gene

Sources for HTRA4 Gene

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