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Aliases for HTR7P1 Gene

Aliases for HTR7P1 Gene

  • 5-Hydroxytryptamine Receptor 7 Pseudogene 1 2 3 5
  • 5-Hydroxytryptamine (Serotonin) Receptor 7 Pseudogene 1 2 3
  • 5-Hydroxytryptamine (Serotonin) Receptor 7 Pseudogene 2
  • Serotonin-7 Receptor Pseudogene 3
  • HTR7P 3

External Ids for HTR7P1 Gene

Previous HGNC Symbols for HTR7P1 Gene

  • HTR7P

Previous GeneCards Identifiers for HTR7P1 Gene

  • GC12P013153
  • GC12P013154

Summaries for HTR7P1 Gene

GeneCards Summary for HTR7P1 Gene

HTR7P1 (5-Hydroxytryptamine Receptor 7 Pseudogene 1) is a Pseudogene.

Additional gene information for HTR7P1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HTR7P1 Gene

Genomics for HTR7P1 Gene

Regulatory Elements for HTR7P1 Gene

Enhancers for HTR7P1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12H012990 1.7 FANTOM5 Ensembl ENCODE dbSUPER 28 -8.0 -8002 3 PKNOX1 MAX SIN3A ZIC2 ZNF121 CTBP1 GATA3 ZNF316 ZSCAN5C FOS HTR7P1 ENSG00000255621 HEBP1 DUSP16 FAM234B EMP1 GC12M012990 GC12P012980
GH12H012998 1 ENCODE 31.7 +0.1 77 3 PKNOX1 SIN3A DMAP1 ZBTB7B YY1 GLIS2 SP3 SP5 REST ZNF658 HTR7P1 HEBP1 ENSG00000255621 GC12P013002
GH12H013193 1.8 FANTOM5 Ensembl ENCODE dbSUPER 15.8 +202.7 202673 19 TBP PKNOX1 NFIB KLF17 SIN3A FEZF1 BATF RAD21 RFX5 YY1 HTR7P1 MIR614 GSG1 DDX47 GPRC5D-AS1 ENSG00000255621 HEBP1 ENSG00000221611 LOH12CR2 ENSG00000256011
GH12H012396 1.6 Ensembl ENCODE dbSUPER 11.2 -601.5 -601548 3 FOXA2 ZNF133 ARID4B SIN3A FEZF1 GLI4 ZNF2 YY1 GLIS2 FOS DDX47 HTR7P1 LRP6 CREBL2 GPR19 ENSG00000240424 DUSP16 LOC100506248 MANSC1 CDKN1B
GH12H013163 1.5 FANTOM5 Ensembl ENCODE dbSUPER 11 +165.4 165394 4 GTF2F1 JUN MAX BRCA1 YY1 TCF12 POLR2A FOSL2 FOS ZBTB20 EMP1 ENSG00000255621 GSG1 HEBP1 HTR7P1 FAM234B GC12P013156 GC12M013185
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HTR7P1 on UCSC Golden Path with GeneCards custom track

Promoters for HTR7P1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000049022 80 2601 PKNOX1 RB1 ZNF76 SIN3A DMAP1 RAD21 ZBTB7B YY1 SCRT2 ZNF391

Genomic Location for HTR7P1 Gene

Chromosome:
12
Start:
13,000,420 bp from pter
End:
13,004,830 bp from pter
Size:
4,411 bases
Orientation:
Plus strand

Genomic View for HTR7P1 Gene

Genes around HTR7P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HTR7P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HTR7P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HTR7P1 Gene

Proteins for HTR7P1 Gene

Post-translational modifications for HTR7P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HTR7P1 Gene

Domains & Families for HTR7P1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HTR7P1 Gene

Function for HTR7P1 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for HTR7P1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HTR7P1 Gene

Localization for HTR7P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HTR7P1 Gene

Pathways & Interactions for HTR7P1 Gene

SuperPathways for HTR7P1 Gene

No Data Available

Interacting Proteins for HTR7P1 Gene

Gene Ontology (GO) - Biological Process for HTR7P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HTR7P1 Gene

Drugs & Compounds for HTR7P1 Gene

No Compound Related Data Available

Transcripts for HTR7P1 Gene

mRNA/cDNA for HTR7P1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for HTR7P1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for HTR7P1 Gene

No ASD Table

Relevant External Links for HTR7P1 Gene

GeneLoc Exon Structure for
HTR7P1
ECgene alternative splicing isoforms for
HTR7P1

Expression for HTR7P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HTR7P1 Gene

NURSA nuclear receptor signaling pathways regulating expression of HTR7P1 Gene:

HTR7P1

SOURCE GeneReport for Unigene cluster for HTR7P1 Gene:

Hs.593282
genes like me logo Genes that share expression patterns with HTR7P1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HTR7P1 Gene

Orthologs for HTR7P1 Gene

Evolution for HTR7P1 Gene

ENSEMBL:
Gene Tree for HTR7P1 (if available)
TreeFam:
Gene Tree for HTR7P1 (if available)

No data available for Orthologs for HTR7P1 Gene

Paralogs for HTR7P1 Gene

No data available for Paralogs for HTR7P1 Gene

Variants for HTR7P1 Gene

Sequence variations from dbSNP and Humsavar for HTR7P1 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs1000298413 -- 13,002,120(+) TGCCT(A/T)CTTTC intron-variant, nc-transcript-variant, upstream-variant-2KB
rs1000630815 -- 13,000,743(+) CTCCA(A/G)CCTCC intron-variant, nc-transcript-variant, upstream-variant-2KB
rs1000663346 -- 13,001,099(+) TTGGA(A/G)CCATT intron-variant, nc-transcript-variant, upstream-variant-2KB
rs1002061219 -- 13,000,537(+) AGCCG(A/C)TGGGC intron-variant, nc-transcript-variant, upstream-variant-2KB
rs1002146519 -- 12,998,917(+) TCTGT(A/G)TTCTA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for HTR7P1 Gene

Variant ID Type Subtype PubMed ID
esv2745567 CNV deletion 23290073
nsv557607 CNV loss 21841781
nsv826260 CNV gain 20364138
nsv832333 CNV gain 17160897

Relevant External Links for HTR7P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HTR7P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HTR7P1 Gene

Disorders for HTR7P1 Gene

Relevant External Links for HTR7P1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HTR7P1

No disorders were found for HTR7P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HTR7P1 Gene

Publications for HTR7P1 Gene

  1. A human serotonin-7 receptor pseudogene. (PMID: 9473718) Qian IH … Seeman P (Brain research. Molecular brain research 1998) 2 3 22 60
  2. The human serotonin-7 receptor pseudogene: variation and chromosome location. (PMID: 9785699) Nam D … Seeman P (Journal of psychiatry & neuroscience : JPN 1998) 22 60

Products for HTR7P1 Gene

Sources for HTR7P1 Gene

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