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Aliases for HTR5A-AS1 Gene

Subcategory (RNA class) for HTR5A-AS1 Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for HTR5A-AS1 Gene

  • HTR5A Antisense RNA 1 2 3
  • HTR5A Opposite Strand 2 3
  • HTR5AOS 3

External Ids for HTR5A-AS1 Gene

ORGUL Members for HTR5A-AS1 Gene

Previous Symbols for HTR5A-AS1 Gene

  • HTR5AOS

Summaries for HTR5A-AS1 Gene

GeneCards Summary for HTR5A-AS1 Gene

HTR5A-AS1 (HTR5A Antisense RNA 1) is an RNA Gene, and belongs to the lncRNA class.

fRNAdb sequence ontologies for HTR5A-AS1 Gene

  • antisense_RNA: Antisense RNA is RNA that is transcribed from the coding, rather than the template, strand of DNA. It is therefore complementary to mRNA.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for HTR5A-AS1 Gene

Genomics for HTR5A-AS1 Gene

Genomic Location for HTR5A-AS1 Gene

Start:
155,067,067 bp from pter
End:
155,071,557 bp from pter
Size:
4,491 bases
Orientation:
Minus strand

Genomic View for HTR5A-AS1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for HTR5A-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HTR5A-AS1 Gene

No data available for Regulatory Elements for HTR5A-AS1 Gene

Proteins for HTR5A-AS1 Gene

Post-translational modifications for HTR5A-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HTR5A-AS1 Gene

Domains for HTR5A-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HTR5A-AS1 Gene

Function for HTR5A-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for HTR5A-AS1 Gene

Localization for HTR5A-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HTR5A-AS1 Gene

Pathways for HTR5A-AS1 Gene

SuperPathways for HTR5A-AS1 Gene

No Data Available

Interacting Proteins for HTR5A-AS1 Gene

Gene Ontology (GO) - Biological Process for HTR5A-AS1 Gene

None

No data available for Pathways by source for HTR5A-AS1 Gene

Transcripts for HTR5A-AS1 Gene

mRNA/cDNA for HTR5A-AS1 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HTR5A-AS1 Gene

No ASD Table

Relevant External Links for HTR5A-AS1 Gene

GeneLoc Exon Structure for
HTR5A-AS1
ECgene alternative splicing isoforms for
HTR5A-AS1

Expression for HTR5A-AS1 Gene

mRNA expression in normal human tissues for HTR5A-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for HTR5A-AS1 Gene

This gene is overexpressed in Brain - Cerebellar Hemisphere (8.2), Brain - Frontal Cortex (BA9) (6.3), Brain - Cerebellum (6.2), Brain - Nucleus accumbens (basal ganglia) (5.8), Brain - Cortex (5.6), Brain - Putamen (basal ganglia) (5.2), Brain - Caudate (basal ganglia) (5.0), and Brain - Anterior cingulate cortex (BA24) (4.2).
genes like me logo Genes that share expressions with HTR5A-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein expression and mRNA Expression by UniProt/SwissProt for HTR5A-AS1 Gene

Orthologs for HTR5A-AS1 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for HTR5A-AS1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia HTR5A-AS1 36
  • 97 (a)
OneToOne
Species with no ortholog for HTR5A-AS1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for HTR5A-AS1 Gene

ENSEMBL:
Gene Tree for HTR5A-AS1 (if available)
TreeFam:
Gene Tree for HTR5A-AS1 (if available)

Paralogs for HTR5A-AS1 Gene

Pseudogenes.org Pseudogenes for HTR5A-AS1 Gene

genes like me logo Genes that share paralogs with HTR5A-AS1: view

No data available for Paralogs for HTR5A-AS1 Gene

Variants for HTR5A-AS1 Gene

Sequence variations from dbSNP and Humsavar for HTR5A-AS1 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type MAF
rs2581842 -- 155,068,130(-) GATAT(C/T)AAGAT nc-transcript-variant
rs7799286 -- 155,067,031(+) gttat(A/G)tatat downstream-variant-500B
rs10215840 -- 155,068,064(+) atacc(A/G)cagac nc-transcript-variant
rs12533460 -- 155,067,490(+) TGGTG(C/G)CTTAG nc-transcript-variant
rs12536554 -- 155,067,719(+) AACAG(A/G)AGCAA nc-transcript-variant

Relevant External Links for HTR5A-AS1 Gene

HapMap Linkage Disequilibrium report
HTR5A-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for HTR5A-AS1 Gene

Disorders for HTR5A-AS1 Gene

No disorders were found for HTR5A-AS1 Gene.

No data available for UniProtKB/Swiss-Prot for HTR5A-AS1 Gene

Publications for HTR5A-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for HTR5A-AS1 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate HTR5A-AS1
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for HTR5A-AS1
    • Block miRNA regulation of HTR5A-AS1 using miScript Target Protectors

    Sources for HTR5A-AS1 Gene

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