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Aliases for HTR5A-AS1 Gene

Subcategory (RNA class) for HTR5A-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for HTR5A-AS1 Gene

  • HTR5A Antisense RNA 1 2 3 5
  • HTR5A Opposite Strand 2 3
  • HTR5AOS 3

External Ids for HTR5A-AS1 Gene

Previous HGNC Symbols for HTR5A-AS1 Gene


Previous GeneCards Identifiers for HTR5A-AS1 Gene

  • GC07M154860

Summaries for HTR5A-AS1 Gene

GeneCards Summary for HTR5A-AS1 Gene

HTR5A-AS1 (HTR5A Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for HTR5A-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HTR5A-AS1 Gene

Genomics for HTR5A-AS1 Gene

Regulatory Elements for HTR5A-AS1 Gene

Enhancers for HTR5A-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07H155071 1 ENCODE 0.7 +1.1 1132 0.2 ATF1 ARID4B SIN3A ZNF2 GLIS2 GATA2 ZNF143 ATF7 NCOA1 MIER2 HTR5A HTR5A-AS1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HTR5A-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for HTR5A-AS1 Gene

Genomic Locations for HTR5A-AS1 Gene
4,491 bases
Minus strand

Genomic View for HTR5A-AS1 Gene

Genes around HTR5A-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HTR5A-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HTR5A-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HTR5A-AS1 Gene

Proteins for HTR5A-AS1 Gene

Post-translational modifications for HTR5A-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HTR5A-AS1 Gene

Domains & Families for HTR5A-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HTR5A-AS1 Gene

Function for HTR5A-AS1 Gene

Phenotypes From GWAS Catalog for HTR5A-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HTR5A-AS1 Gene

Localization for HTR5A-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HTR5A-AS1 Gene

Pathways & Interactions for HTR5A-AS1 Gene

SuperPathways for HTR5A-AS1 Gene

No Data Available

Interacting Proteins for HTR5A-AS1 Gene

Gene Ontology (GO) - Biological Process for HTR5A-AS1 Gene


No data available for Pathways by source and SIGNOR curated interactions for HTR5A-AS1 Gene

Drugs & Compounds for HTR5A-AS1 Gene

No Compound Related Data Available

Transcripts for HTR5A-AS1 Gene

mRNA/cDNA for HTR5A-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HTR5A-AS1 Gene

No ASD Table

Relevant External Links for HTR5A-AS1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for HTR5A-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HTR5A-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for HTR5A-AS1 Gene

This gene is overexpressed in Brain - Cerebellar Hemisphere (x8.2), Brain - Frontal Cortex (BA9) (x6.3), Brain - Cerebellum (x6.2), Brain - Nucleus accumbens (basal ganglia) (x5.8), Brain - Cortex (x5.6), Brain - Putamen (basal ganglia) (x5.2), Brain - Caudate (basal ganglia) (x5.0), and Brain - Anterior cingulate cortex (BA24) (x4.2).
genes like me logo Genes that share expression patterns with HTR5A-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HTR5A-AS1 Gene

Orthologs for HTR5A-AS1 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for HTR5A-AS1 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia HTR5A-AS1 34
  • 97 (a)
Species where no ortholog for HTR5A-AS1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for HTR5A-AS1 Gene

Gene Tree for HTR5A-AS1 (if available)
Gene Tree for HTR5A-AS1 (if available)

Paralogs for HTR5A-AS1 Gene

No data available for Paralogs for HTR5A-AS1 Gene

Variants for HTR5A-AS1 Gene

Sequence variations from dbSNP and Humsavar for HTR5A-AS1 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs193920930 Uncertain significance 155,070,978(+) GCAAA(C/G)ACGAC intron-variant, reference, missense
rs1000688929 -- 155,070,337(+) CTCTC(C/T)GGAGC intron-variant, utr-variant-5-prime
rs1000758177 -- 155,069,185(+) CGTCC(C/T)CTAGG nc-transcript-variant, upstream-variant-2KB
rs1001092374 -- 155,071,721(+) CCCCA(C/T)ACTTG intron-variant, upstream-variant-2KB
rs1001218594 -- 155,066,928(+) AGCAG(C/T)GTGAT downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for HTR5A-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1022356 CNV gain 25217958

Variation tolerance for HTR5A-AS1 Gene

Gene Damage Index Score: 0.50; 10.92% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for HTR5A-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for HTR5A-AS1 Gene

Disorders for HTR5A-AS1 Gene

Relevant External Links for HTR5A-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for HTR5A-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HTR5A-AS1 Gene

Publications for HTR5A-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 60

Products for HTR5A-AS1 Gene

Sources for HTR5A-AS1 Gene

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