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Aliases for HTR5A-AS1 Gene

Subcategory (RNA class) for HTR5A-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for HTR5A-AS1 Gene

  • HTR5A Antisense RNA 1 2 3 5
  • HTR5A Opposite Strand 2 3
  • HTR5AOS 3

External Ids for HTR5A-AS1 Gene

Previous HGNC Symbols for HTR5A-AS1 Gene


Previous GeneCards Identifiers for HTR5A-AS1 Gene

  • GC07M154860

Summaries for HTR5A-AS1 Gene

GeneCards Summary for HTR5A-AS1 Gene

HTR5A-AS1 (HTR5A Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HTR5A-AS1 Gene

Genomics for HTR5A-AS1 Gene

Regulatory Elements for HTR5A-AS1 Gene

Enhancers for HTR5A-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HTR5A-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for HTR5A-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001897744 1257 201 CREB3L1 MLX ZFP64 ARID4B SIN3A DMAP1 ZNF2 SLC30A9 CBX5 ZNF207

Genomic Location for HTR5A-AS1 Gene

155,067,067 bp from pter
155,071,557 bp from pter
4,491 bases
Minus strand

Genomic View for HTR5A-AS1 Gene

Genes around HTR5A-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HTR5A-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HTR5A-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HTR5A-AS1 Gene

Proteins for HTR5A-AS1 Gene

Post-translational modifications for HTR5A-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HTR5A-AS1 Gene

Domains & Families for HTR5A-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HTR5A-AS1 Gene

Function for HTR5A-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HTR5A-AS1 Gene

Localization for HTR5A-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HTR5A-AS1 Gene

Pathways & Interactions for HTR5A-AS1 Gene

SuperPathways for HTR5A-AS1 Gene

No Data Available

Interacting Proteins for HTR5A-AS1 Gene

Gene Ontology (GO) - Biological Process for HTR5A-AS1 Gene


No data available for Pathways by source and SIGNOR curated interactions for HTR5A-AS1 Gene

Transcripts for HTR5A-AS1 Gene

mRNA/cDNA for HTR5A-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HTR5A-AS1 Gene

No ASD Table

Relevant External Links for HTR5A-AS1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for HTR5A-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for HTR5A-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for HTR5A-AS1 Gene

This gene is overexpressed in Brain - Cerebellar Hemisphere (x8.2), Brain - Frontal Cortex (BA9) (x6.3), Brain - Cerebellum (x6.2), Brain - Nucleus accumbens (basal ganglia) (x5.8), Brain - Cortex (x5.6), Brain - Putamen (basal ganglia) (x5.2), Brain - Caudate (basal ganglia) (x5.0), and Brain - Anterior cingulate cortex (BA24) (x4.2).
genes like me logo Genes that share expression patterns with HTR5A-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for HTR5A-AS1 Gene

Orthologs for HTR5A-AS1 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for HTR5A-AS1 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia HTR5A-AS1 35
  • 97 (a)
Species where no ortholog for HTR5A-AS1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for HTR5A-AS1 Gene

Gene Tree for HTR5A-AS1 (if available)
Gene Tree for HTR5A-AS1 (if available)

Paralogs for HTR5A-AS1 Gene

No data available for Paralogs for HTR5A-AS1 Gene

Variants for HTR5A-AS1 Gene

Sequence variations from dbSNP and Humsavar for HTR5A-AS1 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs193920930 Uncertain significance 155,070,978(+) GCAAA(C/G)ACGAC intron-variant, reference, missense
rs1017488 -- 155,068,597(-) TCATC(G/T)TAAAG nc-transcript-variant, upstream-variant-2KB
rs10215840 -- 155,068,064(+) atacc(A/G)cagac nc-transcript-variant
rs10588464 -- 155,068,430(+) AGGGA(-/GG)GGGGA nc-transcript-variant, upstream-variant-2KB
rs111514985 -- 155,068,430(+) AGGGA(A/G)GGGGG nc-transcript-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for HTR5A-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1022356 CNV gain 25217958

Variation tolerance for HTR5A-AS1 Gene

Gene Damage Index Score: 0.50; 10.92% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for HTR5A-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for HTR5A-AS1 Gene

Disorders for HTR5A-AS1 Gene

Relevant External Links for HTR5A-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for HTR5A-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HTR5A-AS1 Gene

Publications for HTR5A-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for HTR5A-AS1 Gene

Sources for HTR5A-AS1 Gene

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