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Aliases for HTR3E-AS1 Gene

Subcategory (RNA class) for HTR3E-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for HTR3E-AS1 Gene

  • HTR3E Antisense RNA 1 2 3 5
  • HTR3E Antisense RNA 1 (Non-Protein Coding) 2

External Ids for HTR3E-AS1 Gene

Previous GeneCards Identifiers for HTR3E-AS1 Gene

  • GC00U933928
  • GC03M183813

Summaries for HTR3E-AS1 Gene

GeneCards Summary for HTR3E-AS1 Gene

HTR3E-AS1 (HTR3E Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HTR3E-AS1 Gene

Genomics for HTR3E-AS1 Gene

Regulatory Elements for HTR3E-AS1 Gene

Enhancers for HTR3E-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03G184154 1.3 ENCODE dbSUPER 10.1 -51.2 -51219 4.2 HDGF ARID4B SIN3A DMAP1 SLC30A9 ZNF143 KLF13 SP3 SP5 MXD4 EIF2B5 ALG3 ECE2 ABCF3 CAMK2N2 PSMD2 VWA5B2 MIR1224 EIF4G1 SNORD66
GH03G183975 1 ENCODE 10.3 +128.1 128051 2.7 HDGF PKNOX1 ATF1 CREB3L1 ARNT ZNF121 ZNF766 CAVIN1 JUNB NCOA1 ABCC5 HTR3C PARL RPSAP31 HTR3E-AS1 EIF2B5 EIF4G1 VWA5B2 FAM131A CAMK2N2
GH03G184192 0.9 dbSUPER 9.9 -88.4 -88413 2.1 FOXA2 ARID4B FOS ZNF263 SP5 ZHX2 PPARG SREBF1 NFIL3 ATF4 VWA5B2 ALG3 ECE2 MIR1224 CAMK2N2 ABCF3 PSMD2 HTR3C HTR3E-AS1 EIF4G1
GH03G183966 0.7 ENCODE 10.2 +138.7 138651 0.2 PKNOX1 SIN3A RAD21 E2F1 CTBP1 ZNF316 GATA3 TCF7L2 EZH2 ZNF687 ABCC5-AS1 HTR3C PARL RPSAP31 HTR3E-AS1 EIF2B5 PSMD2 CAMK2N2 PIR62380
GH03G183967 0.6 ENCODE 10.2 +137.3 137271 0.2 PKNOX1 RFX1 MNT FOXA1 GATA3 CREB1 FOS FOSL2 ABCC5-AS1 HTR3C PARL RPSAP31 HTR3E-AS1 EIF2B5 PSMD2 CAMK2N2 PIR62380
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HTR3E-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for HTR3E-AS1 Gene

Chromosome:
3
Start:
184,095,118 bp from pter
End:
184,105,178 bp from pter
Size:
10,061 bases
Orientation:
Minus strand

Genomic View for HTR3E-AS1 Gene

Genes around HTR3E-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HTR3E-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HTR3E-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HTR3E-AS1 Gene

Proteins for HTR3E-AS1 Gene

Post-translational modifications for HTR3E-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HTR3E-AS1 Gene

Domains & Families for HTR3E-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HTR3E-AS1 Gene

Function for HTR3E-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HTR3E-AS1 Gene

Localization for HTR3E-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HTR3E-AS1 Gene

Pathways & Interactions for HTR3E-AS1 Gene

SuperPathways for HTR3E-AS1 Gene

No Data Available

Interacting Proteins for HTR3E-AS1 Gene

Gene Ontology (GO) - Biological Process for HTR3E-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HTR3E-AS1 Gene

Drugs & Compounds for HTR3E-AS1 Gene

No Compound Related Data Available

Transcripts for HTR3E-AS1 Gene

mRNA/cDNA for HTR3E-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HTR3E-AS1 Gene

No ASD Table

Relevant External Links for HTR3E-AS1 Gene

GeneLoc Exon Structure for
HTR3E-AS1
ECgene alternative splicing isoforms for
HTR3E-AS1

Expression for HTR3E-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HTR3E-AS1 Gene

genes like me logo Genes that share expression patterns with HTR3E-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HTR3E-AS1 Gene

Orthologs for HTR3E-AS1 Gene

Evolution for HTR3E-AS1 Gene

ENSEMBL:
Gene Tree for HTR3E-AS1 (if available)
TreeFam:
Gene Tree for HTR3E-AS1 (if available)

No data available for Orthologs for HTR3E-AS1 Gene

Paralogs for HTR3E-AS1 Gene

No data available for Paralogs for HTR3E-AS1 Gene

Variants for HTR3E-AS1 Gene

Sequence variations from dbSNP and Humsavar for HTR3E-AS1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs1000141018 -- 184,095,203(+) AACAA(C/T)AAAAA nc-transcript-variant, upstream-variant-2KB
rs1000190276 -- 184,095,553(+) ACTCA(G/T)TGGAC intron-variant, upstream-variant-2KB
rs1000294597 -- 184,098,053(+) TGCCC(A/G)CCTCC intron-variant
rs1001142534 -- 184,096,535(+) CAAAT(A/G)AGAAC intron-variant, upstream-variant-2KB
rs1001144894 -- 184,106,584(+) CTCAG(C/T)GGAGC upstream-variant-2KB, reference, missense

Relevant External Links for HTR3E-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HTR3E-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HTR3E-AS1 Gene

Disorders for HTR3E-AS1 Gene

Relevant External Links for HTR3E-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HTR3E-AS1

No disorders were found for HTR3E-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HTR3E-AS1 Gene

Publications for HTR3E-AS1 Gene

No publications were found for HTR3E-AS1 Gene.

Products for HTR3E-AS1 Gene

Sources for HTR3E-AS1 Gene

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