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Aliases for HTR3E-AS1 Gene

Subcategory (RNA class) for HTR3E-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for HTR3E-AS1 Gene

  • HTR3E Antisense RNA 1 2 3 5
  • HTR3E Antisense RNA 1 (Non-Protein Coding) 2

External Ids for HTR3E-AS1 Gene

Previous GeneCards Identifiers for HTR3E-AS1 Gene

  • GC00U933928
  • GC03M183813

Summaries for HTR3E-AS1 Gene

GeneCards Summary for HTR3E-AS1 Gene

HTR3E-AS1 (HTR3E Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for HTR3E-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HTR3E-AS1 Gene

Genomics for HTR3E-AS1 Gene

GeneHancer (GH) Regulatory Elements for HTR3E-AS1 Gene

Promoters and enhancers for HTR3E-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03I184154 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 10.1 -51.2 -51219 4.2 HDGF FOXA2 ARID4B SIN3A DMAP1 SLC30A9 ZNF121 GLIS2 ELK1 ZNF143 DVL3 EIF2B5 RPS3P3 POLR2H ALG3 ECE2 EEF1AKMT4 EEF1AKMT4-ECE2 ABCF3 CAMK2N2
GH03I183975 Enhancer 1 ENCODE 10.3 +128.1 128050 2.7 HDGF PKNOX1 ATF1 ARNT ZNF121 ZNF766 ATF7 CAVIN1 NCOA1 ZNF592 ABCC5 HTR3C PARL RPSAP31 HTR3E-AS1 EIF2B5 EIF4G1 FAM131A VWA5B2 CAMK2N2
GH03I183966 Enhancer 0.7 ENCODE 10.2 +138.7 138650 0.2 MEIS2 PKNOX1 SIN3A E2F1 CTBP1 ZNF316 GATA3 TCF7L2 SMARCE1 ZNF687 ABCC5-AS1 HTR3C PARL RPSAP31 HTR3E-AS1 EIF2B5 PSMD2 CAMK2N2 PIR62380 ABCC5
GH03I183967 Enhancer 0.6 ENCODE 10.2 +137.3 137270 0.2 PKNOX1 RFX1 MNT FOXA1 GATA3 CREB1 FOS FOSL2 ABCC5-AS1 HTR3C PARL RPSAP31 HTR3E-AS1 EIF2B5 PSMD2 CAMK2N2 PIR62380 ABCC5
GH03I184195 Enhancer 0.3 dbSUPER 9.9 -91.0 -90952 1.9 SMAD4 ALG3 ECE2 EEF1AKMT4 EEF1AKMT4-ECE2 VWA5B2 EIF2B5 MIR1224 CAMK2N2 HTR3C PSMD2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around HTR3E-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for HTR3E-AS1 Gene

Genomic Locations for HTR3E-AS1 Gene
chr3:184,095,118-184,105,178
(GRCh38/hg38)
Size:
10,061 bases
Orientation:
Minus strand
chr3:183,812,906-183,822,966
(GRCh37/hg19)

Genomic View for HTR3E-AS1 Gene

Genes around HTR3E-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HTR3E-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HTR3E-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HTR3E-AS1 Gene

Proteins for HTR3E-AS1 Gene

Post-translational modifications for HTR3E-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HTR3E-AS1 Gene

Domains & Families for HTR3E-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HTR3E-AS1 Gene

Function for HTR3E-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HTR3E-AS1 Gene

Localization for HTR3E-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HTR3E-AS1 Gene

Pathways & Interactions for HTR3E-AS1 Gene

SuperPathways for HTR3E-AS1 Gene

No Data Available

Interacting Proteins for HTR3E-AS1 Gene

Gene Ontology (GO) - Biological Process for HTR3E-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HTR3E-AS1 Gene

Drugs & Compounds for HTR3E-AS1 Gene

No Compound Related Data Available

Transcripts for HTR3E-AS1 Gene

mRNA/cDNA for HTR3E-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for HTR3E-AS1 Gene

No ASD Table

Relevant External Links for HTR3E-AS1 Gene

GeneLoc Exon Structure for
HTR3E-AS1
ECgene alternative splicing isoforms for
HTR3E-AS1

Expression for HTR3E-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HTR3E-AS1 Gene

genes like me logo Genes that share expression patterns with HTR3E-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HTR3E-AS1 Gene

Orthologs for HTR3E-AS1 Gene

Evolution for HTR3E-AS1 Gene

ENSEMBL:
Gene Tree for HTR3E-AS1 (if available)
TreeFam:
Gene Tree for HTR3E-AS1 (if available)

No data available for Orthologs for HTR3E-AS1 Gene

Paralogs for HTR3E-AS1 Gene

No data available for Paralogs for HTR3E-AS1 Gene

Variants for HTR3E-AS1 Gene

Sequence variations from dbSNP and Humsavar for HTR3E-AS1 Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs1000141018 -- 184,095,203(-) C/T non_coding_transcript_variant
rs1000190276 -- 184,095,553(-) G/T intron_variant
rs1000294597 -- 184,098,053(-) A/G intron_variant
rs1001142534 -- 184,096,535(-) A/G intron_variant
rs1001144894 -- 184,106,584(-) T/A/C upstream_transcript_variant

Additional Variant Information for HTR3E-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HTR3E-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HTR3E-AS1 Gene

Disorders for HTR3E-AS1 Gene

Additional Disease Information for HTR3E-AS1

No disorders were found for HTR3E-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HTR3E-AS1 Gene

Publications for HTR3E-AS1 Gene

No publications were found for HTR3E-AS1 Gene.

Products for HTR3E-AS1 Gene

Sources for HTR3E-AS1 Gene

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