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Aliases for HTR2A-AS1 Gene

Subcategory (RNA class) for HTR2A-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for HTR2A-AS1 Gene

  • HTR2A Antisense RNA 1 2 3 5
  • HTR2A Antisense RNA 1 (Non-Protein Coding) 2

External Ids for HTR2A-AS1 Gene

Previous GeneCards Identifiers for HTR2A-AS1 Gene

  • GC00U933704
  • GC13P047427

Summaries for HTR2A-AS1 Gene

GeneCards Summary for HTR2A-AS1 Gene

HTR2A-AS1 (HTR2A Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HTR2A-AS1 Gene

Genomics for HTR2A-AS1 Gene

Regulatory Elements for HTR2A-AS1 Gene

Enhancers for HTR2A-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH13F046803 0.2 ENCODE 10.7 -48.0 -47974 2.2 JUND BHLHE40 SIN3A FOS HTR2A-AS1 ESD GC13M046835 GC13M046836
GH13F046865 0.8 Ensembl ENCODE 0.4 +14.1 14102 1.7 CEBPB MAX MNT CEBPG FOXP2 MYC HTR2A HTR2A-AS1 GC13M046892
GH13F046866 0.5 ENCODE 0.4 +13.2 13151 0.1 HTR2A HTR2A-AS1 GC13M046892
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around HTR2A-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for HTR2A-AS1 Gene

46,852,140 bp from pter
46,856,299 bp from pter
4,160 bases
Plus strand

Genomic View for HTR2A-AS1 Gene

Genes around HTR2A-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HTR2A-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HTR2A-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HTR2A-AS1 Gene

Proteins for HTR2A-AS1 Gene

Post-translational modifications for HTR2A-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HTR2A-AS1 Gene

Domains & Families for HTR2A-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HTR2A-AS1 Gene

Function for HTR2A-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HTR2A-AS1 Gene

Localization for HTR2A-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HTR2A-AS1 Gene

Pathways & Interactions for HTR2A-AS1 Gene

SuperPathways for HTR2A-AS1 Gene

No Data Available

Interacting Proteins for HTR2A-AS1 Gene

Gene Ontology (GO) - Biological Process for HTR2A-AS1 Gene


No data available for Pathways by source and SIGNOR curated interactions for HTR2A-AS1 Gene

Transcripts for HTR2A-AS1 Gene

mRNA/cDNA for HTR2A-AS1 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HTR2A-AS1 Gene

No ASD Table

Relevant External Links for HTR2A-AS1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for HTR2A-AS1 Gene

mRNA expression in normal human tissues for HTR2A-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for HTR2A-AS1 Gene

This gene is overexpressed in Testis (x53.0).
genes like me logo Genes that share expression patterns with HTR2A-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for HTR2A-AS1 Gene

Orthologs for HTR2A-AS1 Gene

Evolution for HTR2A-AS1 Gene

Gene Tree for HTR2A-AS1 (if available)
Gene Tree for HTR2A-AS1 (if available)

No data available for Orthologs for HTR2A-AS1 Gene

Paralogs for HTR2A-AS1 Gene

No data available for Paralogs for HTR2A-AS1 Gene

Variants for HTR2A-AS1 Gene

Sequence variations from dbSNP and Humsavar for HTR2A-AS1 Gene

SNP ID Clin Chr 13 pos Sequence Context AA Info Type
rs113000534 -- 46,852,969(+) TAGGG(-/C)TTTTT intron-variant
rs113057785 -- 46,854,238(+) GATGG(C/G)CTTTC intron-variant
rs113169292 -- 46,856,727(+) AGAGG(G/T)TTATC intron-variant, downstream-variant-500B
rs113767065 -- 46,854,136(+) GACTT(A/C/T)GTGTC intron-variant
rs113967715 -- 46,851,187(+) TTTCC(C/T)AGTAA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for HTR2A-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2763019 CNV loss 21179565

Relevant External Links for HTR2A-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HTR2A-AS1 Gene

Disorders for HTR2A-AS1 Gene

Relevant External Links for HTR2A-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for HTR2A-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HTR2A-AS1 Gene

Publications for HTR2A-AS1 Gene

  1. Genomic structure and expression of the human serotonin 2A receptor gene (HTR2A) locus: identification of novel HTR2A and antisense (HTR2A-AS1) exons. (PMID: 26738766) Ruble C.L. … Nisenbaum L.K. (BMC Genet. 2016) 3 64
  2. Pharmacogenetic analysis of the mGlu2/3 agonist LY2140023 monohydrate in the treatment of schizophrenia. (PMID: 21173788) Liu W. … Nisenbaum L.K. (Pharmacogenomics J. 2012) 3 64

Products for HTR2A-AS1 Gene

Sources for HTR2A-AS1 Gene

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