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Aliases & Descriptions for HTR2A
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| 5-HT-2 3 | | 5-HT-2A 3 | | 5-HT2A 1, 2 | | HTR2 2, 3 | | OTTHUMP00000018378 2 |
| | | Descriptions |
|---|
| 5-HT2 receptor 2 | | 5-hydroxytryptamine (serotonin) receptor 2A 2 | | Serotonin receptor 2A 3 |
|
| | Search outside databases for aliases for HTR2A genePrevious GC identifers: GC13M045407 GC13M041394 GC13M046344 GC13M045205 |
Summaries for HTR2A(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| UniProtKB/Swiss-Prot: 5HT2A_HUMAN, P28223Function: This is one of the several different receptors for 5-hydroxytryptamine (serotonin), a biogenic hormone that functions as a neurotransmitter, a hormone, and a mitogen. This receptor mediates its action by association with G proteins that activate a phosphatidylinositol-calcium second messenger system. This receptor is involved in tracheal smooth muscle contraction, bronchoconstriction, and control of aldosterone productionGene Wiki entry for HTR2A (5-HT2A_receptor) |
Genomic Location for HTR2A
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the HTR2A gene 
Entrez Gene cytogenetic band: 13q14-q21 Ensembl cytogenetic band: 13q14.2 HGNC cytogenetic band: 13q14-q21HTR2A Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 13 GeneLoc Exon Structure GeneLoc location for GC13M046305:
(about GC identifiers)
Start:
|
46,305,514 bp from pter |
End:
|
46,368,176 bp from pter |
Size:
|
62,663 bases |
Orientation:
|
minus strand |
RefSeq DNA sequence:- NC_000013.9 NT_024524.13
| Proteins for HTR2A
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: 5HT2A_HUMAN, P28223 (See
protein sequence)Recommended Name: 5-hydroxytryptamine receptor 2A Size: 471 amino acids; 52603 Da
Subunit: Interacts with MPDZ and INADL. May interact with MPP3, PRDX6, DLG4, DLG1, CASK, APBA1 and MAGI2
Subcellular location: Cell membrane; Multi-pass membrane protein (By similarity). Note=Localizes to the post-synaptic thickening of axo-dendritic synapses (By similarity)
Secondary accessions: Q5T8C0Post-translational modifications:
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_000612.1
ENSEMBL proteins: ENSP00000367959
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
4 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for HTR2A: Assays for HTR2A: | Protein
Domains/ Families for HTR2A(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P28223
ProtoNet protein and cluster: P28223 2 Blocks protein families: IPB000455 5-hydroxytryptamine 2A receptor signature IPB002231 5-hydroxytryptamine receptor signature
UniProtKB/Swiss-Prot: 5HT2A_HUMAN, P28223Domain: The PDZ domain-binding motif is involved in the interaction with INADL, CASK, APBA1, DLG1 and DLG4Similarity: Belongs to the G-protein coupled receptor 1 family | Gene Function for HTR2A
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_000621
Applied Biosystems Silencer® siRNAs for HTR2A
Sigma-Aldrich siRNA and siRNA Panels for HTR2A  Sigma-Aldrich shRNA Panels and shRNA for HTR2A  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_000621                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_000621                                  untagged cDNA clone in CMV expression vector: NM_000621 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_000621
UniProtKB/Swiss-Prot: 5HT2A_HUMAN, P28223Function: This is one of the several different receptors for 5-hydroxytryptamine (serotonin), a biogenic hormone that functions as a neurotransmitter, a hormone, and a mitogen. This receptor mediates its action by association with G proteins that activate a phosphatidylinositol-calcium second messenger system. This receptor is involved in tracheal smooth muscle contraction, bronchoconstriction, and control of aldosterone productionGenatlas biochemistry entry for HTR2A:5-hydroxytryptamine (serotonin) receptor,subtype 2A,G protein coupled receptor superfamily,activating the phosphatidylinositol cycle,paternally imprinted in some individuals (polymorphic imprinting),not associated with schizophrenia5 MGI mutant phenotypes (inferred from 3 alleles ) (MGI details for Htr2a):
4 Gene Ontology (GO) molecular function terms (links to tree view): About this table | Pathways & Interactions for HTR2A
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
| 2 Sigma-Aldrich "Your Favorite Gene" Pathways for HTR2A (Your Favorite Gene powered by Ingenuity) 
Gene Network CentralTM Interacting Genes and Proteins Network for HTR2A 
5/30 Interacting proteins for HTR2A (P282232 ENSP000003679593) via UniProtKB, MINT, and/or STRING (see all 30
)About this table
5/17 Gene Ontology (GO) biological process terms (links to tree view) (see all 17
): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0001659 | temperature homeostasis |
IEA | -- | | GO:0006950 | response to stress |
IEA | -- | | GO:0007165 | signal transduction |
IEA | -- | | GO:0007208 | activation of phospholipase C activity by serotonin receptor signaling pathway |
IEA | -- | | GO:0007268 | synaptic transmission |
TAS | 9109547 | About this table
|
Drugs & Compounds for HTR2A(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|  |
Enzo Life Sciences drugs & compounds for HTR2A |
Compounds for HTR2A available from Tocris Bioscience
| Compound | Action |
CAS
number |
|---|
| TCB-2 | Potent, high affinity 5-HT2A agonist | | | Fananserin | 5-HT2A antagonist. Also D4 antagonist | [127625-29-0] | | Ketanserin tartrate | Selective 5-HT2A antagonist. Also antagonist at 5-HT1D | [83846-83-7] | | DOI hydrochloride | Mixed 5-HT2A/2C agonist | [42203-78-1] | About this table
10/20 Novoseek chemical compound relationships for HTR2A gene (see all 20
)
| Compound |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| (11c)-n-methylspiperone |
77.72 |
4 |
7530376 (1), 10894088 (1), 11313155 (1) |
| 2-methyl-5-ht |
75.56 |
4 |
1425972 (1), 2150179 (1), 7984294 (1), 2299641 (1) (see all 5) |
| sergolexole |
74.45 |
3 |
1560366 (1), 8667223 (1) |
| (tfmpp) |
72.97 |
3 |
8788479 (1), 1292966 (1), 10515319 (1) |
| amesergide |
69.84 |
3 |
8027933 (1), 8667223 (1) |
| altanserin |
69.84 |
1 |
10587097 (1) |
| alpha methyl 5 hydroxytryptamine |
69.24 |
3 |
9522163 (1), 2141111 (1), 2150179 (1) |
| ly 215840 |
69.10 |
8 |
1560366 (5), 8667223 (1) |
| 5-methoxy-alpha-methyltryptamine |
67.91 |
1 |
12676887 (1) |
| benzoylpiperidine |
65.93 |
1 |
1479590 (1) |
About this table
3 PharmGKB drug compound relationships for HTR2A geneAbout this table
|
Transcripts for HTR2A(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_000621
Sigma-Aldrich siRNA and siRNA Panels for HTR2A  Sigma-Aldrich shRNA Panels and shRNA for HTR2A  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_000621 REFSEQ mRNAs for HTR2A gene: NM_000621.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_000621               OriGene GFP tagged cDNA clone in CMV expression vector: NM_000621                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_000621                                  untagged cDNA clone in CMV expression vector: NM_000621  Additional cDNA sequence: AF498982.1 AK302787.1 AK314132.1 BC069356.1 BC069576.1 BC074848.2 BC074849.2 BC096839.1 BX647777.1 M86841.1 S71229.1 X57830.1 3 DOTS entries: DT.456099 DT.209624 DT.95108653 22 AceView cDNA sequences:AF498982 BC069576 AI379882 BC069356 S71229 BX108650 BC074849 BC074848 X57830 AI565418 CA393776 AA954285 CB565885 AW117542 NM_000621 M86841 BX647777 AI005152 BG703062 CD105069 AA166934 AA166746
highest scoring ESTs for HTR2A:AA418537 AA418604 AF498982 BC069356 BC069576 BX647777 CB565885 M86841 S71229 X57830 Unigene Cluster for HTR2A: 5-hydroxytryptamine (serotonin) receptor 2A Hs.654586 [show with all ESTs]Unigene Representative Sequence: X57830
GeneLoc Exon Structure
1 Ensembl transcript including schematic representation: ENST00000378688
|
Expression for HTR2A
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| HTR2A expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for HTR2A
1 / 2 / 3 6 probe-sets matching HTR2A gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: --
SOURCE GeneReport for Unigene cluster: Hs.654586
Expression variation in blood from EXPOLDB for HTR2A |
Orthologs for HTR2A
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for HTR2A gene from 5/8 species (see all 8
)
About this table Species with no ortholog for HTR2A
ENSEMBL Gene Tree for HTR2A | Paralogs for HTR2A(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for HTR2A gene
- HTR2C2 HTR2B2
|
SNPs/Variants for HTR2A(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for HTR2A (up to first 250kb)
|
Disorders & Mutations for HTR2A
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 182135 disorders: 181500 164230 608516 103780 606788 608516 10/87 Novoseek disease relationships for HTR2A gene (see all 87
)
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| schizophrenia |
76.66 |
153 |
14744462 (3), 17069769 (3), 15048642 (3), 9264136 (3) (see all 93) |
| major depression |
63.80 |
28 |
11311507 (3), 2310804 (2), 19428704 (2), 7865496 (2) (see all 20) |
| psychotic |
56.70 |
18 |
10686558 (2), 18712714 (1), 10087520 (1), 10192823 (1) (see all 11) |
| mood disorders |
55.91 |
33 |
10758249 (3), 11992560 (3), 17884017 (3), 19428704 (2) (see all 18) |
| obsessive-compulsive disorder |
55.17 |
19 |
11239910 (3), 18339223 (2), 1624756 (1), 12476319 (1) (see all 11) |
| catalepsy |
51.09 |
3 |
10188965 (1), 8935798 (1) |
| bipolar disorder |
47.76 |
19 |
9341875 (4), 12622403 (2), 19428704 (2), 11093065 (2) (see all 11) |
| schizoaffective disorder |
47.58 |
3 |
19142110 (1), 15121646 (1), 17500207 (1) |
| migraine |
46.32 |
25 |
8675433 (5), 2045831 (4), 1871321 (1), 1337765 (1) (see all 14) |
| seasonal affective disorder |
42.95 |
4 |
10089016 (1), 7811842 (1), 9109547 (1), 12167522 (1) |
About this table
2 PharmGKB disease relationships for HTR2A geneAbout this table
Human Gene Mutation Database: HTR2A Genetic Association Database: HTR2A Human Genome Epidemiology Navigator: HTR2A (276 documents)
|
Medical News for HTR2A(Possibly Related Articles in
Doctor's Guide)
About This Section
| |
Publications for HTR2A (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/979 PubMed articles for HTR2A gene (see all 979
):- Association of risperidone treatment response with a polymorphism in the 5-HT(2A) receptor gene. (PubMed id 12202283)3, 6, 7 Lane H.Y....Chang W.H. (2002)
- Systematic screening for mutations in the human serotonin-2A (5-HT2A) receptor gene: identification of two naturally occurring receptor variants and association analysis in schizophrenia. (PubMed id 8655141)3, 4, 6 Erdmann J....Noethen M.M. (1996)
- Primary structure of the human platelet serotonin 5-HT2A receptor: identify with frontal cortex serotonin 5-HT2A receptor. (PubMed id 8035173)2, 3, 4 Cook E.H. Jr....Leventhal B.L. (1994)
- 102T/C SNP in the 5-hydroxytryptamine receptor 2A (HTR2A) gene and schizophrenia in two southern Han Chinese populations: lack of association. (PubMed id 15048642)1, 3, 6 Zhang X.N....Zhang L.N. (2004)
- Association analysis of the catechol-o-methyltransferase (COMT), serotonin transporter (5-HTT) and serotonin 2A receptor (5HT2A) gene polymorphisms with obsessive-compulsive disorder. (PubMed id 15005715)1, 3, 6 Meira-Lima I....Vallada H. (2004)
- The serotonin-2A receptor polymorphism and smoking behavior in Japan. (PubMed id 15564892)1, 3, 6 Terayama H....Iwahashi K. (2004)
- Lack of association between serotonin-2A receptor gene (HTR2A) polymorphisms and tardive dyskinesia in schizophrenia. (PubMed id 11317228)1, 3, 6 Basile V.S....Kennedy J.L. (2001)
- [Cases-Control association study and transmission disequilibrium test of T102C polymorphism in 5HT2A and Tourette syndrome] (PubMed id 11172633)1, 3, 6 Huang Y....Collier D.A. (2001)
- Genomic organization, coding sequence and functional expression of human 5-HT2 and 5-HT1A receptor genes. (PubMed id 1330647)1, 3, 4 Stam N.J.... Olijve W. (1992)
- Association study of MAO-A, COMT, 5-HT2A, DRD2, and DRD4 polymorphisms with illness time course in mood disorders. (PubMed id 11992560)1, 3, 6 Cusin C....Smeraldi E. (2002)
|
Search for HTR2A
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing HTR2A
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing HTR2A
(According to HUGE)
About This Section
| -- |
Specialized Databases showing HTR2A(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| Name | Description |
| SHMPD | http://shmpd.bii.a-star.edu.sg/gene.php?genestart=A&genename=HTR2A |
|
| | | About This Section
| --
| Services for HTR2A(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for HTR2A:

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Incremental update: 13 Oct 2009
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