Free for academic non-profit institutions. Other users need a Commercial license

Aliases for HTATSF1P2 Gene

Aliases for HTATSF1P2 Gene

  • HIV-1 Tat Specific Factor 1 Pseudogene 2 2 3
  • AL133351.4 5

External Ids for HTATSF1P2 Gene

Previous GeneCards Identifiers for HTATSF1P2 Gene

  • GC00U931087

Summaries for HTATSF1P2 Gene

GeneCards Summary for HTATSF1P2 Gene

HTATSF1P2 (HIV-1 Tat Specific Factor 1 Pseudogene 2) is a Pseudogene.

Additional gene information for HTATSF1P2 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HTATSF1P2 Gene

Genomics for HTATSF1P2 Gene

Regulatory Elements for HTATSF1P2 Gene

Enhancers for HTATSF1P2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06H003021 1.4 ENCODE dbSUPER 81.3 0.0 -34 5.8 HDGF HNRNPUL1 PKNOX1 ARNT ARID4B SIN3A SLC30A9 ZNF766 CBX5 FOS HTATSF1P2 NQO2 PRPF4B RIPK1 LINC01011 BPHL ENSG00000272277 LOC101927759
GH06H003067 1.4 ENCODE dbSUPER 15 -44.2 -44162 2.8 HDGF MLX ARNT ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 ENSG00000272277 PRPF4B HTATSF1P2 PSMG4 BPHL GC06P003076
GH06H003040 0.5 dbSUPER 32 -16.8 -16772 1.3 SOX6 HLF KDM1A PRDM1 EZH2 HTATSF1P2 NQO2 LINC01011 FAM136BP GC06P003040
GH06H002979 2.1 FANTOM5 Ensembl ENCODE dbSUPER 7.4 +38.7 38652 13.6 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF548 SP3 ZC3H11A MEF2D SSRP1 RIPK1 PSMG4 ENSG00000228170 WRNIP1 ENSG00000272320 NQO2 LOC105374888 SERPINB9 SERPINB6 ENSG00000232999
GH06H003063 1.3 ENCODE dbSUPER 10.2 -39.4 -39361 1.7 HDGF PKNOX1 ATF1 ZFP64 ARID4B SIN3A DMAP1 ATF7 SP5 NFYC ENSG00000272277 NQO2 LINC01011 BPHL HTATSF1P2 PRPF4B RIPK1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HTATSF1P2 on UCSC Golden Path with GeneCards custom track

Promoters for HTATSF1P2 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

Genomic Locations for HTATSF1P2 Gene

Genomic Locations for HTATSF1P2 Gene
4,616 bases
Minus strand

Genomic View for HTATSF1P2 Gene

Genes around HTATSF1P2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HTATSF1P2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HTATSF1P2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HTATSF1P2 Gene

Proteins for HTATSF1P2 Gene

Post-translational modifications for HTATSF1P2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HTATSF1P2 Gene

Domains & Families for HTATSF1P2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HTATSF1P2 Gene

Function for HTATSF1P2 Gene

Animal Model Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HTATSF1P2 Gene

Localization for HTATSF1P2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HTATSF1P2 Gene

Pathways & Interactions for HTATSF1P2 Gene

SuperPathways for HTATSF1P2 Gene

No Data Available

Interacting Proteins for HTATSF1P2 Gene

Gene Ontology (GO) - Biological Process for HTATSF1P2 Gene


No data available for Pathways by source and SIGNOR curated interactions for HTATSF1P2 Gene

Drugs & Compounds for HTATSF1P2 Gene

No Compound Related Data Available

Transcripts for HTATSF1P2 Gene

mRNA/cDNA for HTATSF1P2 Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for HTATSF1P2 Gene

HIV-1 Tat specific factor 1 pseudogene 2:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for HTATSF1P2 Gene

No ASD Table

Relevant External Links for HTATSF1P2 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for HTATSF1P2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HTATSF1P2 Gene

mRNA differential expression in normal tissues according to GTEx for HTATSF1P2 Gene

This gene is overexpressed in Brain - Cerebellar Hemisphere (x5.9), Brain - Cerebellum (x5.7), and Whole Blood (x4.2).

NURSA nuclear receptor signaling pathways regulating expression of HTATSF1P2 Gene:


SOURCE GeneReport for Unigene cluster for HTATSF1P2 Gene:

genes like me logo Genes that share expression patterns with HTATSF1P2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HTATSF1P2 Gene

Orthologs for HTATSF1P2 Gene

Evolution for HTATSF1P2 Gene

Gene Tree for HTATSF1P2 (if available)
Gene Tree for HTATSF1P2 (if available)

No data available for Orthologs for HTATSF1P2 Gene

Paralogs for HTATSF1P2 Gene

No data available for Paralogs for HTATSF1P2 Gene

Variants for HTATSF1P2 Gene

Sequence variations from dbSNP and Humsavar for HTATSF1P2 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs1000296011 -- 3,021,989(+) GGCGC(A/C)TGTAG nc-transcript-variant
rs1000926411 -- 3,023,052(+) GAATC(A/G)GAGCA nc-transcript-variant, upstream-variant-2KB
rs1001240125 -- 3,025,241(+) CCTGT(A/C)ATCCT nc-transcript-variant, upstream-variant-2KB
rs1001274312 -- 3,020,681(+) TCATG(G/T)AATTT nc-transcript-variant
rs1001873966 -- 3,026,215(+) GACTA(C/T)CTACA nc-transcript-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for HTATSF1P2 Gene

Variant ID Type Subtype PubMed ID
nsv5177 CNV insertion 18451855
nsv523441 CNV loss 19592680
nsv830575 CNV loss 17160897
nsv470795 CNV gain 18288195
nsv1029300 CNV loss 25217958
esv3607919 CNV loss 21293372

Relevant External Links for HTATSF1P2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HTATSF1P2 Gene

Disorders for HTATSF1P2 Gene

Relevant External Links for HTATSF1P2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for HTATSF1P2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HTATSF1P2 Gene

Publications for HTATSF1P2 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 60

Products for HTATSF1P2 Gene

Sources for HTATSF1P2 Gene

Loading form....