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Aliases for HTATSF1P2 Gene

Aliases for HTATSF1P2 Gene

  • HIV-1 Tat Specific Factor 1 Pseudogene 2 2 3

External Ids for HTATSF1P2 Gene

Previous GeneCards Identifiers for HTATSF1P2 Gene

  • GC00U931087

Summaries for HTATSF1P2 Gene

GeneCards Summary for HTATSF1P2 Gene

HTATSF1P2 (HIV-1 Tat Specific Factor 1 Pseudogene 2) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HTATSF1P2 Gene

Genomics for HTATSF1P2 Gene

Genomic Location for HTATSF1P2 Gene

Chromosome:
6
Start:
3,020,156 bp from pter
End:
3,024,771 bp from pter
Size:
4,616 bases
Orientation:
Minus strand

Genomic View for HTATSF1P2 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
GeneLoc Logo Gene Density

RefSeq DNA sequence for HTATSF1P2 Gene

No data available for Regulatory Elements for HTATSF1P2 Gene

Proteins for HTATSF1P2 Gene

Post-translational modifications for HTATSF1P2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HTATSF1P2 Gene

Domains & Families for HTATSF1P2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HTATSF1P2 Gene

Function for HTATSF1P2 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HTATSF1P2 Gene

Localization for HTATSF1P2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HTATSF1P2 Gene

Pathways & Interactions for HTATSF1P2 Gene

SuperPathways for HTATSF1P2 Gene

No Data Available

Interacting Proteins for HTATSF1P2 Gene

Gene Ontology (GO) - Biological Process for HTATSF1P2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HTATSF1P2 Gene

Drugs & Compounds for HTATSF1P2 Gene

No Compound Related Data Available

Transcripts for HTATSF1P2 Gene

mRNA/cDNA for HTATSF1P2 Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for HTATSF1P2 Gene

HIV-1 Tat specific factor 1 pseudogene 2:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for HTATSF1P2 Gene

No ASD Table

Relevant External Links for HTATSF1P2 Gene

GeneLoc Exon Structure for
HTATSF1P2
ECgene alternative splicing isoforms for
HTATSF1P2

Expression for HTATSF1P2 Gene

mRNA expression in normal human tissues for HTATSF1P2 Gene

mRNA differential expression in normal tissues according to GTEx for HTATSF1P2 Gene

This gene is overexpressed in Brain - Cerebellar Hemisphere (x5.9), Brain - Cerebellum (x5.7), and Whole Blood (x4.2).

SOURCE GeneReport for Unigene cluster for HTATSF1P2 Gene Hs.441039

genes like me logo Genes that share expression patterns with HTATSF1P2: view

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for HTATSF1P2 Gene

Orthologs for HTATSF1P2 Gene

Evolution for HTATSF1P2 Gene

ENSEMBL:
Gene Tree for HTATSF1P2 (if available)
TreeFam:
Gene Tree for HTATSF1P2 (if available)

No data available for Orthologs for HTATSF1P2 Gene

Paralogs for HTATSF1P2 Gene

No data available for Paralogs for HTATSF1P2 Gene

Variants for HTATSF1P2 Gene

Sequence variations from dbSNP and Humsavar for HTATSF1P2 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type MAF
rs927340 -- 3,023,484(+) TTCCA(A/G)TGTCA nc-transcript-variant
rs1963158 -- 3,021,611(+) catgc(A/C/G)gatca nc-transcript-variant
rs1963159 -- 3,021,937(+) gtgaa(A/G)ccctg nc-transcript-variant
rs1963160 -- 3,022,013(+) ggagg(C/T)tgagg nc-transcript-variant
rs1963161 -- 3,022,070(+) gattg(C/T)gccac nc-transcript-variant

Relevant External Links for HTATSF1P2 Gene

HapMap Linkage Disequilibrium report
HTATSF1P2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HTATSF1P2 Gene

Disorders for HTATSF1P2 Gene

Relevant External Links for HTATSF1P2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HTATSF1P2
genes like me logo Genes that share disorders with HTATSF1P2: view

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HTATSF1P2 Gene

Publications for HTATSF1P2 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 67

Products for HTATSF1P2 Gene

Sources for HTATSF1P2 Gene

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