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Aliases for HTATSF1P2 Gene

Aliases for HTATSF1P2 Gene

  • HIV-1 Tat Specific Factor 1 Pseudogene 2 2 3 5

External Ids for HTATSF1P2 Gene

Previous GeneCards Identifiers for HTATSF1P2 Gene

  • GC00U931087

Summaries for HTATSF1P2 Gene

GeneCards Summary for HTATSF1P2 Gene

HTATSF1P2 (HIV-1 Tat Specific Factor 1 Pseudogene 2) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HTATSF1P2 Gene

Genomics for HTATSF1P2 Gene

Regulatory Elements for HTATSF1P2 Gene

Enhancers for HTATSF1P2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06G003021 1.4 ENCODE dbSUPER 81.3 0.0 -34 5.8 HDGF HNRNPUL1 PKNOX1 CREB3L1 ARNT AGO1 ARID4B SIN3A SLC30A9 ZNF766 HTATSF1P2 NQO2 LINC01011 RIPK1 BPHL ENSG00000272277 LOC101927759
GH06G003067 1.4 ENCODE dbSUPER 15 -44.2 -44162 2.8 HDGF HNRNPUL1 CREB3L1 MLX ARNT AGO1 ZFP64 ARID4B SIN3A DMAP1 ENSG00000272277 HTATSF1P2 BPHL RIPK1 GC06P003076
GH06G003040 0.5 dbSUPER 32 -16.8 -16772 1.3 HLF KDM1A ZEB2 PRDM1 EZH2 HTATSF1P2 NQO2 LINC01011 GC06P003040 FAM136BP
GH06G002979 2.1 FANTOM5 Ensembl ENCODE dbSUPER 7.4 +38.7 38652 13.6 CREB3L1 MLX AGO1 DMAP1 FEZF1 YY1 SLC30A9 ZNF143 ZNF548 ZNF263 RIPK1 ENSG00000272320 NQO2 PSMG4 LOC105374888 SERPINB9 SERPINB6 ENSG00000232999 WRNIP1 ENSG00000228170
GH06G003063 1.3 ENCODE dbSUPER 10.2 -39.4 -39361 1.7 HDGF PKNOX1 CREB3L1 AGO1 ZFP64 ARID4B SIN3A DMAP1 ZNF263 SP5 ENSG00000272277 LINC01011 NQO2 RIPK1 BPHL HTATSF1P2
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HTATSF1P2 on UCSC Golden Path with GeneCards custom track

Promoters for HTATSF1P2 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000192165 1371 1601 HDGF HNRNPUL1 PKNOX1 CREB3L1 ARNT AGO1 SIN3A ZNF766 CBX5 ZNF143

Genomic Location for HTATSF1P2 Gene

Chromosome:
6
Start:
3,020,156 bp from pter
End:
3,024,771 bp from pter
Size:
4,616 bases
Orientation:
Minus strand

Genomic View for HTATSF1P2 Gene

Genes around HTATSF1P2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HTATSF1P2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HTATSF1P2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HTATSF1P2 Gene

Proteins for HTATSF1P2 Gene

Post-translational modifications for HTATSF1P2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HTATSF1P2 Gene

Domains & Families for HTATSF1P2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HTATSF1P2 Gene

Function for HTATSF1P2 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HTATSF1P2 Gene

Localization for HTATSF1P2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HTATSF1P2 Gene

Pathways & Interactions for HTATSF1P2 Gene

SuperPathways for HTATSF1P2 Gene

No Data Available

Interacting Proteins for HTATSF1P2 Gene

Gene Ontology (GO) - Biological Process for HTATSF1P2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HTATSF1P2 Gene

Drugs & Compounds for HTATSF1P2 Gene

No Compound Related Data Available

Transcripts for HTATSF1P2 Gene

mRNA/cDNA for HTATSF1P2 Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for HTATSF1P2 Gene

HIV-1 Tat specific factor 1 pseudogene 2:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for HTATSF1P2 Gene

No ASD Table

Relevant External Links for HTATSF1P2 Gene

GeneLoc Exon Structure for
HTATSF1P2
ECgene alternative splicing isoforms for
HTATSF1P2

Expression for HTATSF1P2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HTATSF1P2 Gene

mRNA differential expression in normal tissues according to GTEx for HTATSF1P2 Gene

This gene is overexpressed in Brain - Cerebellar Hemisphere (x5.9), Brain - Cerebellum (x5.7), and Whole Blood (x4.2).

NURSA nuclear receptor signaling pathways regulating expression of HTATSF1P2 Gene:

HTATSF1P2

SOURCE GeneReport for Unigene cluster for HTATSF1P2 Gene:

Hs.441039
genes like me logo Genes that share expression patterns with HTATSF1P2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HTATSF1P2 Gene

Orthologs for HTATSF1P2 Gene

Evolution for HTATSF1P2 Gene

ENSEMBL:
Gene Tree for HTATSF1P2 (if available)
TreeFam:
Gene Tree for HTATSF1P2 (if available)

No data available for Orthologs for HTATSF1P2 Gene

Paralogs for HTATSF1P2 Gene

No data available for Paralogs for HTATSF1P2 Gene

Variants for HTATSF1P2 Gene

Sequence variations from dbSNP and Humsavar for HTATSF1P2 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs1000296011 -- 3,021,989(+) GGCGC(A/C)TGTAG nc-transcript-variant
rs1000926411 -- 3,023,052(+) GAATC(A/G)GAGCA nc-transcript-variant, upstream-variant-2KB
rs1001240125 -- 3,025,241(+) CCTGT(A/C)ATCCT nc-transcript-variant, upstream-variant-2KB
rs1001274312 -- 3,020,681(+) TCATG(G/T)AATTT nc-transcript-variant
rs1001873966 -- 3,026,215(+) GACTA(C/T)CTACA nc-transcript-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for HTATSF1P2 Gene

Variant ID Type Subtype PubMed ID
esv3607919 CNV loss 21293372
nsv1029300 CNV loss 25217958
nsv470795 CNV gain 18288195
nsv5177 CNV insertion 18451855
nsv523441 CNV loss 19592680
nsv830575 CNV loss 17160897

Relevant External Links for HTATSF1P2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HTATSF1P2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HTATSF1P2 Gene

Disorders for HTATSF1P2 Gene

Relevant External Links for HTATSF1P2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HTATSF1P2

No disorders were found for HTATSF1P2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HTATSF1P2 Gene

Publications for HTATSF1P2 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for HTATSF1P2 Gene

Sources for HTATSF1P2 Gene

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