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Aliases for HTATSF1P2 Gene

Aliases for HTATSF1P2 Gene

  • HIV-1 Tat Specific Factor 1 Pseudogene 2 2 3

External Ids for HTATSF1P2 Gene

Previous GeneCards Identifiers for HTATSF1P2 Gene

  • GC00U931087

Summaries for HTATSF1P2 Gene

GeneCards Summary for HTATSF1P2 Gene

HTATSF1P2 (HIV-1 Tat Specific Factor 1 Pseudogene 2) is a Pseudogene.

Additional gene information for HTATSF1P2 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HTATSF1P2 Gene

Genomics for HTATSF1P2 Gene

GeneHancer (GH) Regulatory Elements for HTATSF1P2 Gene

Promoters and enhancers for HTATSF1P2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I003021 Promoter/Enhancer 1.8 Ensembl ENCODE dbSUPER 631.3 0.0 -33 5.8 HDGF HNRNPUL1 PKNOX1 SMAD1 ARNT ARID4B SIN3A IRF4 SLC30A9 POLR2B HTATSF1P2 LOC101927759 NQO2 PRPF4B RIPK1 LINC01011 BPHL ENSG00000272277 GC06P002980
GH06I003067 Promoter/Enhancer 1.8 Ensembl ENCODE dbSUPER 15 -44.2 -44162 2.8 HDGF CLOCK SMAD1 MLX ARNT ZFP64 ARID4B SIN3A DMAP1 ZNF2 ENSG00000272277 PRPF4B HTATSF1P2 PSMG4 BPHL RIPK1 GC06P003076
GH06I003063 Promoter/Enhancer 1.7 Ensembl ENCODE dbSUPER 10.2 -39.4 -39363 1.7 HDGF PKNOX1 ATF1 ZFP64 ARID4B SIN3A DMAP1 ZNF48 POLR2B E2F8 RIPK1 ENSG00000272277 NQO2 LINC01011 BPHL HTATSF1P2
GH06I002979 Promoter/Enhancer 2.3 FANTOM5 Ensembl ENCODE dbSUPER 7.4 +38.7 38651 13.6 CLOCK FEZF1 DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF143 ZNF548 ZNF263 NQO2 LINC01011 RIPK1 PSMG4 ENSG00000228170 WRNIP1 ENSG00000272320 LOC105374888 SERPINB9 SERPINB6
GH06I003040 Enhancer 0.5 dbSUPER 32 -16.8 -16772 1.3 HDAC2 SOX6 HLF CBFA2T3 KDM1A PRDM1 EZH2 GC06P003040 HTATSF1P2 NQO2 LINC01011 FAM136BP
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around HTATSF1P2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for HTATSF1P2 Gene

Genomic Locations for HTATSF1P2 Gene
chr6:3,020,156-3,024,771
(GRCh38/hg38)
Size:
4,616 bases
Orientation:
Minus strand
chr6:3,020,390-3,025,005
(GRCh37/hg19)

Genomic View for HTATSF1P2 Gene

Genes around HTATSF1P2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HTATSF1P2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HTATSF1P2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HTATSF1P2 Gene

Proteins for HTATSF1P2 Gene

Post-translational modifications for HTATSF1P2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HTATSF1P2 Gene

Domains & Families for HTATSF1P2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HTATSF1P2 Gene

Function for HTATSF1P2 Gene

Animal Model Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HTATSF1P2 Gene

Localization for HTATSF1P2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HTATSF1P2 Gene

Pathways & Interactions for HTATSF1P2 Gene

SuperPathways for HTATSF1P2 Gene

No Data Available

Interacting Proteins for HTATSF1P2 Gene

Gene Ontology (GO) - Biological Process for HTATSF1P2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HTATSF1P2 Gene

Drugs & Compounds for HTATSF1P2 Gene

No Compound Related Data Available

Transcripts for HTATSF1P2 Gene

mRNA/cDNA for HTATSF1P2 Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for HTATSF1P2 Gene

HIV-1 Tat specific factor 1 pseudogene 2:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for HTATSF1P2 Gene

No ASD Table

Relevant External Links for HTATSF1P2 Gene

GeneLoc Exon Structure for
HTATSF1P2
ECgene alternative splicing isoforms for
HTATSF1P2

Expression for HTATSF1P2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HTATSF1P2 Gene

mRNA differential expression in normal tissues according to GTEx for HTATSF1P2 Gene

This gene is overexpressed in Brain - Cerebellar Hemisphere (x5.9), Brain - Cerebellum (x5.7), and Whole Blood (x4.2).

NURSA nuclear receptor signaling pathways regulating expression of HTATSF1P2 Gene:

HTATSF1P2

SOURCE GeneReport for Unigene cluster for HTATSF1P2 Gene:

Hs.441039
genes like me logo Genes that share expression patterns with HTATSF1P2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HTATSF1P2 Gene

Orthologs for HTATSF1P2 Gene

Evolution for HTATSF1P2 Gene

ENSEMBL:
Gene Tree for HTATSF1P2 (if available)
TreeFam:
Gene Tree for HTATSF1P2 (if available)

No data available for Orthologs for HTATSF1P2 Gene

Paralogs for HTATSF1P2 Gene

No data available for Paralogs for HTATSF1P2 Gene

Variants for HTATSF1P2 Gene

Sequence variations from dbSNP and Humsavar for HTATSF1P2 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1000296011 -- 3,021,989(-) C/A non_coding_transcript_variant
rs1000926411 -- 3,023,052(-) G/A non_coding_transcript_variant
rs1001240125 -- 3,025,241(-) A/C upstream_transcript_variant
rs1001274312 -- 3,020,681(-) T/G non_coding_transcript_variant
rs1001873966 -- 3,026,215(-) T/C upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for HTATSF1P2 Gene

Variant ID Type Subtype PubMed ID
esv3607919 CNV loss 21293372
nsv1029300 CNV loss 25217958
nsv470795 CNV gain 18288195
nsv5177 CNV insertion 18451855
nsv523441 CNV loss 19592680
nsv830575 CNV loss 17160897

Additional Variant Information for HTATSF1P2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HTATSF1P2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HTATSF1P2 Gene

Disorders for HTATSF1P2 Gene

Additional Disease Information for HTATSF1P2

No disorders were found for HTATSF1P2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HTATSF1P2 Gene

Publications for HTATSF1P2 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for HTATSF1P2 Gene

Sources for HTATSF1P2 Gene

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