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Aliases for HTATSF1P2 Gene

Aliases for HTATSF1P2 Gene

  • HIV-1 Tat Specific Factor 1 Pseudogene 2 2 3

External Ids for HTATSF1P2 Gene

Previous GeneCards Identifiers for HTATSF1P2 Gene

  • GC00U931087

Summaries for HTATSF1P2 Gene

GeneCards Summary for HTATSF1P2 Gene

HTATSF1P2 (HIV-1 Tat Specific Factor 1 Pseudogene 2) is a Pseudogene. Diseases associated with HTATSF1P2 include hiv-1.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HTATSF1P2 Gene

Genomics for HTATSF1P2 Gene

Genomic Location for HTATSF1P2 Gene

Start:
3,020,156 bp from pter
End:
3,024,771 bp from pter
Size:
4,616 bases
Orientation:
Minus strand

Genomic View for HTATSF1P2 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for HTATSF1P2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HTATSF1P2 Gene

No data available for Regulatory Elements for HTATSF1P2 Gene

Proteins for HTATSF1P2 Gene

Post-translational modifications for HTATSF1P2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HTATSF1P2 Gene

Domains for HTATSF1P2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HTATSF1P2 Gene

Function for HTATSF1P2 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for HTATSF1P2 Gene

Localization for HTATSF1P2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HTATSF1P2 Gene

Pathways for HTATSF1P2 Gene

SuperPathways for HTATSF1P2 Gene

No Data Available

Interacting Proteins for HTATSF1P2 Gene

Gene Ontology (GO) - Biological Process for HTATSF1P2 Gene

None

No data available for Pathways by source for HTATSF1P2 Gene

Transcripts for HTATSF1P2 Gene

mRNA/cDNA for HTATSF1P2 Gene

(3) Additional mRNA sequences :
(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for HTATSF1P2 Gene

HIV-1 Tat specific factor 1 pseudogene 2:
Representative Sequences:

miRNA Products

  • QIAGEN qRT-PCR Assays for microRNAs that regulate HTATSF1P2
    • Block miRNA regulation of HTATSF1P2 using miScript Target Protectors

    Inhibitory RNA Products

    • Predesigned siRNA for gene silencing in human,mouse,rat for HTATSF1P2

    Primer Products

    • OriGene qSTAR qPCR primer pairs in human,mouse,rat for HTATSF1P2
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat

    Flow Cytometry Products

    Alternative Splicing Database (ASD) splice patterns (SP) for HTATSF1P2 Gene

    No ASD Table

    Relevant External Links for HTATSF1P2 Gene

    GeneLoc Exon Structure for
    HTATSF1P2
    ECgene alternative splicing isoforms for
    HTATSF1P2

    Expression for HTATSF1P2 Gene

    mRNA expression in normal human tissues for HTATSF1P2 Gene

    mRNA differential expression in normal tissues according to GTEx for HTATSF1P2 Gene

    This gene is overexpressed in Brain - Cerebellar Hemisphere (5.9), Brain - Cerebellum (5.7), and Whole Blood (4.2).

    SOURCE GeneReport for Unigene cluster for HTATSF1P2 Gene Hs.441039

    genes like me logo Genes that share expressions with HTATSF1P2: view

    In Situ Assay Products

    No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein expression and mRNA Expression by UniProt/SwissProt for HTATSF1P2 Gene

    Orthologs for HTATSF1P2 Gene

    Evolution for HTATSF1P2 Gene

    ENSEMBL:
    Gene Tree for HTATSF1P2 (if available)
    TreeFam:
    Gene Tree for HTATSF1P2 (if available)

    No data available for Orthologs for HTATSF1P2 Gene

    Paralogs for HTATSF1P2 Gene

    No data available for Paralogs for HTATSF1P2 Gene

    Variants for HTATSF1P2 Gene

    Sequence variations from dbSNP and Humsavar for HTATSF1P2 Gene

    SNP ID Clin Chr 06 pos Sequence Context AA Info Type MAF
    rs927340 -- 3,023,484(+) TTCCA(A/G)TGTCA nc-transcript-variant
    rs1963158 -- 3,021,611(+) catgc(A/C)gatca nc-transcript-variant
    rs1963159 -- 3,021,937(+) gtgaa(A/G)ccctg nc-transcript-variant
    rs1963160 -- 3,022,013(+) ggagg(C/T)tgagg nc-transcript-variant
    rs1963161 -- 3,022,070(+) gattg(C/T)gccac nc-transcript-variant

    Relevant External Links for HTATSF1P2 Gene

    HapMap Linkage Disequilibrium report
    HTATSF1P2

    No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for HTATSF1P2 Gene

    Disorders for HTATSF1P2 Gene

    MalaCards: The human disease database

    MalaCards: The human disease database. (1) Diseases for HTATSF1P2 Gene including...

    Search for HTATSF1P2 Gene in MalaCards »
    genes like me logo Genes that share disorders with HTATSF1P2: view

    No data available for UniProtKB/Swiss-Prot for HTATSF1P2 Gene

    Publications for HTATSF1P2 Gene

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

    Products for HTATSF1P2 Gene

    • QIAGEN qRT-PCR Assays for microRNAs that regulate HTATSF1P2
      • QuantiTect SYBR Green Assays in human,mouse,rat
      • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
      • QuantiFast Probe-based Assays in human,mouse,rat
      • Predesigned siRNA for gene silencing in human,mouse,rat for HTATSF1P2
      • Block miRNA regulation of HTATSF1P2 using miScript Target Protectors

      Sources for HTATSF1P2 Gene

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