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Aliases for HSPD1P13 Gene

Subcategory (RNA class) for HSPD1P13 Gene

lncRNA

Aliases for HSPD1P13 Gene

  • Heat Shock Protein Family D (Hsp60) Member 1 Pseudogene 13 2 3
  • Heat Shock 60kDa Protein 1 (Chaperonin) Pseudogene 13 2 3
  • AP000641.1 5
  • HSPD1-16P 3

External Ids for HSPD1P13 Gene

ORGUL Members for HSPD1P13 Gene

Previous GeneCards Identifiers for HSPD1P13 Gene

  • GC00U922889
  • GC11U901629
  • GC11P105577

Summaries for HSPD1P13 Gene

GeneCards Summary for HSPD1P13 Gene

HSPD1P13 (Heat Shock Protein Family D (Hsp60) Member 1 Pseudogene 13) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for HSPD1P13 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HSPD1P13 Gene

Genomics for HSPD1P13 Gene

GeneHancer (GH) Regulatory Elements for HSPD1P13 Gene

Promoters and enhancers for HSPD1P13 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11I105718 Enhancer 0.9 FANTOM5 ENCODE 0.4 +13.1 13095 1.7 PKNOX1 FOXA2 NR2F1 JUNB BATF RELA MAFF BCL11A IKZF1 ATF7 GRIA4 HSPD1P13 RNU4-55P
GH11I105609 Promoter/Enhancer 1.6 EPDnew Ensembl ENCODE 0.2 -95.0 -95010 3.2 CTCF MXI1 GLIS2 POLR2A GLIS1 CTBP2 POU5F1 EZH2 ZBTB20 GRIA4 AASDHPPT HSPD1P13
GH11I105708 Enhancer 0.3 FANTOM5 0.8 +2.2 2199 0.1 GRIA4 KBTBD3 MSANTD4 HSPD1P13 RNU4-55P
GH11I105642 Enhancer 0.3 FANTOM5 0.2 -63.8 -63753 0 GRIA4 MSANTD4 HSPD1P13
GH11I105803 Enhancer 0.3 FANTOM5 0.2 +97.8 97752 0.4 GRIA4 KBTBD3 MSANTD4 AASDHPPT RNU4-55P HSPD1P13
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around HSPD1P13 on UCSC Golden Path with GeneCards custom track

Genomic Locations for HSPD1P13 Gene

Genomic Locations for HSPD1P13 Gene
chr11:105,706,299-105,707,937
(GRCh38/hg38)
Size:
1,639 bases
Orientation:
Plus strand
chr11:105,577,025-105,578,663
(GRCh37/hg19)

Genomic View for HSPD1P13 Gene

Genes around HSPD1P13 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HSPD1P13 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HSPD1P13 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HSPD1P13 Gene

Proteins for HSPD1P13 Gene

Post-translational modifications for HSPD1P13 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HSPD1P13 Gene

Domains & Families for HSPD1P13 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HSPD1P13 Gene

Function for HSPD1P13 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HSPD1P13 Gene

Localization for HSPD1P13 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HSPD1P13 Gene

Pathways & Interactions for HSPD1P13 Gene

SuperPathways for HSPD1P13 Gene

No Data Available

Interacting Proteins for HSPD1P13 Gene

Gene Ontology (GO) - Biological Process for HSPD1P13 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HSPD1P13 Gene

Drugs & Compounds for HSPD1P13 Gene

No Compound Related Data Available

Transcripts for HSPD1P13 Gene

mRNA/cDNA for HSPD1P13 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for HSPD1P13 Gene

No ASD Table

Relevant External Links for HSPD1P13 Gene

GeneLoc Exon Structure for
HSPD1P13
ECgene alternative splicing isoforms for
HSPD1P13

Expression for HSPD1P13 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HSPD1P13 Gene

mRNA differential expression in normal tissues according to GTEx for HSPD1P13 Gene

This gene is overexpressed in Brain - Cerebellum (x19.8) and Brain - Cerebellar Hemisphere (x11.9).

NURSA nuclear receptor signaling pathways regulating expression of HSPD1P13 Gene:

HSPD1P13
genes like me logo Genes that share expression patterns with HSPD1P13: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HSPD1P13 Gene

Orthologs for HSPD1P13 Gene

Evolution for HSPD1P13 Gene

ENSEMBL:
Gene Tree for HSPD1P13 (if available)
TreeFam:
Gene Tree for HSPD1P13 (if available)

No data available for Orthologs for HSPD1P13 Gene

Paralogs for HSPD1P13 Gene

No data available for Paralogs for HSPD1P13 Gene

Variants for HSPD1P13 Gene

Additional Variant Information for HSPD1P13 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HSPD1P13

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HSPD1P13 Gene

Disorders for HSPD1P13 Gene

No disorders were found for HSPD1P13 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HSPD1P13 Gene

Publications for HSPD1P13 Gene

  1. Chaperonin genes on the rise: new divergent classes and intense duplication in human and other vertebrate genomes. (PMID: 20193073) Mukherjee K … Brocchieri L (BMC evolutionary biology 2010) 3 58
  2. Human chromosome 11 DNA sequence and analysis including novel gene identification. (PMID: 16554811) Taylor TD … Sakaki Y (Nature 2006) 3 58
  3. Finishing the euchromatic sequence of the human genome. (PMID: 15496913) International Human Genome Sequencing Consortium (Nature 2004) 3 58
  4. Initial sequencing and analysis of the human genome. (PMID: 11237011) Lander ES … International Human Genome Sequencing Consortium (Nature 2001) 3 58

Products for HSPD1P13 Gene

Sources for HSPD1P13 Gene

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