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Aliases for HSPD1 Gene

Aliases for HSPD1 Gene

  • Heat Shock 60kDa Protein 1 (Chaperonin) 2 3
  • HSP60 3 4 6
  • Mitochondrial Matrix Protein P1 3 4
  • P60 Lymphocyte Protein 3 4
  • 60 KDa Chaperonin 3 4
  • Chaperonin 60 3 4
  • HuCHA60 3 4
  • HSP-60 3 4
  • SPG13 3 6
  • CPN60 3 4
  • HLD4 3 6
  • Spastic Paraplegia 13 (Autosomal Dominant) 2
  • 60 KDa Heat Shock Protein, Mitochondrial 3
  • Heat Shock 60kD Protein 1 (Chaperonin) 2
  • Short Heat Shock Protein 60 Hsp60s1 3
  • Heat Shock Protein 65 3
  • Heat Shock Protein 60 4
  • GROEL 3
  • HSP65 3

External Ids for HSPD1 Gene

Previous HGNC Symbols for HSPD1 Gene

  • SPG13

Previous GeneCards Identifiers for HSPD1 Gene

  • GC12M056909
  • GC02M197063
  • GC02M198315
  • GC02M198553
  • GC02M198176
  • GC02M198059
  • GC02M190203

Summaries for HSPD1 Gene

Entrez Gene Summary for HSPD1 Gene

  • This gene encodes a member of the chaperonin family. The encoded mitochondrial protein may function as a signaling molecule in the innate immune system. This protein is essential for the folding and assembly of newly imported proteins in the mitochondria. This gene is adjacent to a related family member and the region between the 2 genes functions as a bidirectional promoter. Several pseudogenes have been associated with this gene. Two transcript variants encoding the same protein have been identified for this gene. Mutations associated with this gene cause autosomal recessive spastic paraplegia 13. [provided by RefSeq, Jun 2010]

GeneCards Summary for HSPD1 Gene

HSPD1 (Heat Shock 60kDa Protein 1 (Chaperonin)) is a Protein Coding gene. Diseases associated with HSPD1 include spastic paraplegia 13, autosomal dominant and leukodystrophy, hypomyelinating, 4. Among its related pathways are Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein and SIDS Susceptibility Pathways. GO annotations related to this gene include ATPase activity and single-stranded DNA binding.

UniProtKB/Swiss-Prot for HSPD1 Gene

  • Implicated in mitochondrial protein import and macromolecular assembly. May facilitate the correct folding of imported proteins. May also prevent misfolding and promote the refolding and proper assembly of unfolded polypeptides generated under stress conditions in the mitochondrial matrix

Gene Wiki entry for HSPD1 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HSPD1 Gene

Genomics for HSPD1 Gene

Regulatory Elements for HSPD1 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for HSPD1 Gene

Start:
197,486,581 bp from pter
End:
197,516,737 bp from pter
Size:
30,157 bases
Orientation:
Minus strand

Genomic View for HSPD1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for HSPD1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HSPD1 Gene

Proteins for HSPD1 Gene

  • Protein details for HSPD1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P10809-CH60_HUMAN
    Recommended name:
    60 kDa heat shock protein, mitochondrial
    Protein Accession:
    P10809
    Secondary Accessions:
    • B2R5M6
    • B7Z712
    • Q38L19
    • Q9UCR6

    Protein attributes for HSPD1 Gene

    Size:
    573 amino acids
    Molecular mass:
    61055 Da
    Quaternary structure:
    • Interacts with HRAS (By similarity). Interacts with HBV protein X and HTLV-1 protein p40tax. Interacts with ATAD3A. Interacts with METTL20 and METTL21B.

    Alternative splice isoforms for HSPD1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for HSPD1 Gene

Proteomics data for HSPD1 Gene at MOPED

Post-translational modifications for HSPD1 Gene

  • Ubiquitination at Lys31, Lys58, Lys72, Lys75, Lys82, Lys96, Lys125, Lys130, Lys133, Lys160, Lys191, Lys218, Lys233, Lys250, Lys292, Lys352, Lys469, and Lys481
  • Modification sites at PhosphoSitePlus

Other Protein References for HSPD1 Gene

Antibody Products

  • Cell Signaling Technology (CST) Antibodies for HSPD1 (HSP60)

No data available for DME Specific Peptides for HSPD1 Gene

Domains for HSPD1 Gene

Gene Families for HSPD1 Gene

HGNC:
  • CHAP :Heat Shock Proteins / Chaperonins

Graphical View of Domain Structure for InterPro Entry

P10809

UniProtKB/Swiss-Prot:

CH60_HUMAN :
  • P10809
Family:
  • Belongs to the chaperonin (HSP60) family.
genes like me logo Genes that share domains with HSPD1: view

Function for HSPD1 Gene

Molecular function for HSPD1 Gene

UniProtKB/Swiss-Prot Function:
Implicated in mitochondrial protein import and macromolecular assembly. May facilitate the correct folding of imported proteins. May also prevent misfolding and promote the refolding and proper assembly of unfolded polypeptides generated under stress conditions in the mitochondrial matrix

Gene Ontology (GO) - Molecular Function for HSPD1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001530 lipopolysaccharide binding IDA 17164250
GO:0002039 p53 binding IPI 18086682
GO:0003688 DNA replication origin binding ISS --
GO:0003697 single-stranded DNA binding ISS --
GO:0003725 double-stranded RNA binding IDA 21266579
genes like me logo Genes that share ontologies with HSPD1: view
genes like me logo Genes that share phenotypes with HSPD1: view

Animal Model Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for HSPD1

In Situ Assay Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targeting and HOMER Transcription for HSPD1 Gene

Localization for HSPD1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for HSPD1 Gene

Mitochondrion matrix.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for HSPD1 Gene COMPARTMENTS Subcellular localization image for HSPD1 gene
Compartment Confidence
cytosol 5
mitochondrion 5
endosome 4
extracellular 4
chloroplast 3
cytoskeleton 2
endoplasmic reticulum 2
nucleus 2
plasma membrane 2
lysosome 1
vacuole 1

Gene Ontology (GO) - Cellular Components for HSPD1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005615 extracellular space IDA 18229457
GO:0005737 cytoplasm IDA 21328542
GO:0005739 mitochondrion IDA --
GO:0005743 mitochondrial inner membrane ISS --
GO:0005759 mitochondrial matrix TAS 17823127
genes like me logo Genes that share ontologies with HSPD1: view

Pathways for HSPD1 Gene

genes like me logo Genes that share pathways with HSPD1: view

Pathways by source for HSPD1 Gene

PCR Array Products

Gene Ontology (GO) - Biological Process for HSPD1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0002368 B cell cytokine production IDA 16148103
GO:0002755 MyD88-dependent toll-like receptor signaling pathway IDA 16148103
GO:0002842 positive regulation of T cell mediated immune response to tumor cell IDA 10663613
GO:0006200 obsolete ATP catabolic process --
GO:0006458 de novo protein folding ISS --
genes like me logo Genes that share ontologies with HSPD1: view

Compounds for HSPD1 Gene

(5) ApexBio Compounds for HSPD1 Gene

Compound Action Cas Number
AT13387 Hsp90 inhibitor [912999-49-6]
BIIB021 "Hsp90 inhibitor,selective and competitive" [848695-25-0]
Geldanamycin "Hsp90 inhibitor,potent and specific" [30562-34-6]
HSP990 (NVP-HSP990) [934343-74-5]
VER-50589 [747413-08-7]

(98) Novoseek inferred chemical compound relationships for HSPD1 Gene

Compound -log(P) Hits PubMed IDs
p 277 88.9 20
6-iodoacetamidofluorescein 73.4 3
omp 2 69.8 8
subreum 69.5 1
cpaf 58.5 3
genes like me logo Genes that share compounds with HSPD1: view

Transcripts for HSPD1 Gene

Unigene Clusters for HSPD1 Gene

Heat shock 60kDa protein 1 (chaperonin):
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for HSPD1

Primer Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for HSPD1 Gene

ExUns: 1 ^ 2 ^ 3a · 3b ^ 4 ^ 5a · 5b ^ 6a · 6b · 6c ^ 7a · 7b ^ 8a · 8b ^ 9a · 9b · 9c · 9d ^ 10a · 10b ^ 11a · 11b ^ 12 ^ 13a · 13b ^ 14
SP1: - - -
SP2: - - -
SP3:
SP4:
SP5: - - - -
SP6: - - -
SP7: - -
SP8: -
SP9: -
SP10:
SP11: -
SP12:

Relevant External Links for HSPD1 Gene

GeneLoc Exon Structure for
HSPD1
ECgene alternative splicing isoforms for
HSPD1

Expression for HSPD1 Gene

mRNA expression in normal human tissues for HSPD1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for HSPD1 Gene

This gene is overexpressed in Adrenal Gland (5.3).

Protein differential expression in normal tissues for HSPD1 Gene

This gene is overexpressed in Adrenal (9.7).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for HSPD1 Gene

SOURCE GeneReport for Unigene cluster for HSPD1 Gene Hs.595053

genes like me logo Genes that share expressions with HSPD1: view

Expression partners for HSPD1 Gene

In Situ Assay Products

No data available for mRNA Expression by UniProt/SwissProt for HSPD1 Gene

Orthologs for HSPD1 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for HSPD1 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia HSPD1 35
  • 93.29 (n)
  • 98.02 (a)
HSPD1 36
  • 98 (a)
OneToOne
dog
(Canis familiaris)
Mammalia HSPD1 35
  • 93.6 (n)
  • 98.08 (a)
HSPD1 36
  • 70 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Hspd1 35
  • 90.71 (n)
  • 97.48 (a)
Hspd1 16
Hspd1 36
  • 98 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia HSPD1 35
  • 99.94 (n)
  • 99.83 (a)
rat
(Rattus norvegicus)
Mammalia Hspd1 35
  • 91.19 (n)
  • 97.48 (a)
oppossum
(Monodelphis domestica)
Mammalia HSPD1 36
  • 94 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia HSPD1 36
  • 79 (a)
OneToOne
chicken
(Gallus gallus)
Aves HSPD1 35
  • 82.67 (n)
  • 94.24 (a)
HSPD1 36
  • 94 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia HSPD1 36
  • 80 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia hspd1 35
  • 77.84 (n)
  • 89.91 (a)
Str.2924 35
zebrafish
(Danio rerio)
Actinopterygii -- 35
hspd1 35
  • 74.47 (n)
  • 87.93 (a)
hspd1 36
  • 87 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta CG16954 37
  • 42 (a)
CG7235 37
  • 72 (a)
Hsp60 37
  • 73 (a)
Hsp60B 37
  • 58 (a)
Hsp60 35
  • 63.16 (n)
  • 74.46 (a)
Hsp60 36
  • 74 (a)
OneToMany
Hsp60B 36
  • 50 (a)
OneToMany
Hsp60C 36
  • 71 (a)
OneToMany
Hsp60D 36
  • 40 (a)
OneToMany
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP004002 35
  • 62.6 (n)
  • 74.5 (a)
worm
(Caenorhabditis elegans)
Secernentea hsp-60 35
  • 63.72 (n)
  • 71.82 (a)
hsp-60 36
  • 71 (a)
OneToOne
A. gosspyii yeast
(Ashbya gossypii)
Saccharomycetes AGOS_AFR155W 35
  • 57.81 (n)
  • 58.06 (a)
K. lactis yeast
(Kluyveromyces lactis)
Saccharomycetes KLLA0F09449g 35
  • 59.31 (n)
  • 56.03 (a)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes HSP60 35
  • 60.54 (n)
  • 57.6 (a)
HSP60 36
  • 55 (a)
OneToOne
HSP60 38
thale cress
(Arabidopsis thaliana)
eudicotyledons HSP60 35
  • 62.64 (n)
  • 59.52 (a)
soybean
(Glycine max)
eudicotyledons Gma.5022 35
Alicante grape
(Vitis vinifera)
eudicotyledons Vvi.6802 35
barley
(Hordeum vulgare)
Liliopsida Hv.2992 35
rice
(Oryza sativa)
Liliopsida Os10g0462900 35
  • 61.68 (n)
  • 60.07 (a)
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.4026 35
bread mold
(Neurospora crassa)
Ascomycetes NCU01589 35
  • 54.09 (n)
  • 58 (a)
fission yeast
(Schizosaccharomyces pombe)
Schizosaccharomycetes mcp60 35
  • 58.03 (n)
  • 55.98 (a)
sea squirt
(Ciona savignyi)
Ascidiacea CSA.8912 36
  • 67 (a)
OneToOne
Species with no ortholog for HSPD1:
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • beta proteobacteria (Neisseria meningitidis)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for HSPD1 Gene

ENSEMBL:
Gene Tree for HSPD1 (if available)
TreeFam:
Gene Tree for HSPD1 (if available)

Paralogs for HSPD1 Gene

genes like me logo Genes that share paralogs with HSPD1: view

No data available for Paralogs for HSPD1 Gene

Variants for HSPD1 Gene

Sequence variations from dbSNP and Humsavar for HSPD1 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type MAF
rs955 -- 197,486,851(-) GCCTA(C/T)AGATA utr-variant-3-prime
rs8539 Likely benign 197,497,294(+) ATGTT(C/T)TTGTA reference, synonymous-codon
rs12392 -- 197,486,805(-) CATTC(C/G/T)TGATA utr-variant-3-prime
rs788016 -- 197,487,569(+) GGAAA(A/G)TAttc intron-variant
rs1057448 -- 197,495,726(-) gtccc(A/G)gctac intron-variant

Relevant External Links for HSPD1 Gene

HapMap Linkage Disequilibrium report
HSPD1
Human Gene Mutation Database (HGMD)
HSPD1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for HSPD1 Gene

Disorders for HSPD1 Gene

(2) OMIM Diseases for HSPD1 Gene (118190)

UniProtKB/Swiss-Prot

CH60_HUMAN
  • Spastic paraplegia 13, autosomal dominant (SPG13) [MIM:605280]: A form of spastic paraplegia, a neurodegenerative disorder characterized by a slow, gradual, progressive weakness and spasticity of the lower limbs. Rate of progression and the severity of symptoms are quite variable. Initial symptoms may include difficulty with balance, weakness and stiffness in the legs, muscle spasms, and dragging the toes when walking. In some forms of the disorder, bladder symptoms (such as incontinence) may appear, or the weakness and stiffness may spread to other parts of the body. {ECO:0000269 PubMed:11898127}. Note=The disease is caused by mutations affecting the gene represented in this entry.
  • Leukodystrophy, hypomyelinating, 4 (HLD4) [MIM:612233]: A severe autosomal recessive hypomyelinating leukodystrophy. Clinically characterized by infantile-onset rotary nystagmus, progressive spastic paraplegia, neurologic regression, motor impairment, profound mental retardation. Death usually occurs within the first two decades of life. {ECO:0000269 PubMed:18571143}. Note=The disease is caused by mutations affecting the gene represented in this entry.

(96) Novoseek inferred disease relationships for HSPD1 Gene

Disease -log(P) Hits PubMed IDs
shock 92.1 231
autoimmune diseases 62 34
autoimmunity 61.8 34
chlamydial infection 61.6 10
atherosclerosis 61.3 68

Relevant External Links for HSPD1

Genetic Association Database (GAD)
HSPD1
Human Genome Epidemiology (HuGE) Navigator
HSPD1
genes like me logo Genes that share disorders with HSPD1: view

No data available for Genatlas for HSPD1 Gene

Publications for HSPD1 Gene

  1. HSPD1 is not a major susceptibility gene for rheumatoid arthritis in the French Caucasian population. (PMID: 17925998) Jacq L. … CornAclis F. (J. Hum. Genet. 2007) 3 23 48
  2. Genetic variation in heat shock protein 60 gene and coronary heart disease in China: tagging-SNP haplotype analysis in a case-control study. (PMID: 18320357) He M.A. … Wu T. (Cell Stress Chaperones 2008) 3 23 48
  3. Nucleotide sequences and novel structural features of human and Chinese hamster hsp60 (chaperonin) gene families. (PMID: 1980192) Venner T.J. … Gupta R.S. (DNA Cell Biol. 1990) 2 3 4
  4. Hereditary spastic paraplegia SPG13 is associated with a mutation in the gene encoding the mitochondrial chaperonin Hsp60. (PMID: 11898127) Hansen J.J. … Bross P. (Am. J. Hum. Genet. 2002) 2 3 4
  5. Human liver protein map: a reference database established by microsequencing and gel comparison. (PMID: 1286669) Hochstrasser D.F. … Hughes G.J. (Electrophoresis 1992) 3 4

Products for HSPD1 Gene

Sources for HSPD1 Gene

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