Free for academic non-profit institutions. Other users need a Commercial license

Aliases for HSPB9 Gene

Aliases for HSPB9 Gene

  • Heat Shock Protein, Alpha-Crystallin-Related, B9 2 3
  • Cancer/Testis Antigen 51 2 3 4
  • CT51 3 4
  • Small Heat Shock Protein B9 3
  • Heat Shock Protein Beta-9 3
  • HspB9 4

External Ids for HSPB9 Gene

Summaries for HSPB9 Gene

GeneCards Summary for HSPB9 Gene

HSPB9 (Heat Shock Protein, Alpha-Crystallin-Related, B9) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HSPB9 Gene

Genomics for HSPB9 Gene

Genomic Location for HSPB9 Gene

Start:
42,121,431 bp from pter
End:
42,123,353 bp from pter
Size:
1,923 bases
Orientation:
Plus strand

Genomic View for HSPB9 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for HSPB9 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HSPB9 Gene

Regulatory Elements for HSPB9 Gene

Proteins for HSPB9 Gene

  • Protein details for HSPB9 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9BQS6-HSPB9_HUMAN
    Recommended name:
    Heat shock protein beta-9
    Protein Accession:
    Q9BQS6
    Secondary Accessions:
    • B3KSG6
    • Q52LB4

    Protein attributes for HSPB9 Gene

    Size:
    159 amino acids
    Molecular mass:
    17486 Da
    Quaternary structure:
    No Data Available

neXtProt entry for HSPB9 Gene

Proteomics data for HSPB9 Gene at MOPED

Post-translational modifications for HSPB9 Gene

No Post-translational modifications

Other Protein References for HSPB9 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for HSPB9 Gene

Domains for HSPB9 Gene

Gene Families for HSPB9 Gene

HGNC:
  • HSPB :Heat shock proteins / HSPB

Protein Domains for HSPB9 Gene

UniProtKB/Swiss-Prot:

HSPB9_HUMAN
Family:
  • Belongs to the small heat shock protein (HSP20) family.:
    • Q9BQS6
genes like me logo Genes that share domains with HSPB9: view

Function for HSPB9 Gene

Gene Ontology (GO) - Molecular Function for HSPB9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 15503857
genes like me logo Genes that share ontologies with HSPB9: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for HSPB9 Gene

Localization for HSPB9 Gene

Subcellular locations from UniProtKB/Swiss-Prot for HSPB9 Gene

Cytoplasm. Nucleus. Note=Translocates to nuclear foci during heat shock.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for HSPB9 Gene COMPARTMENTS Subcellular localization image for HSPB9 gene
Compartment Confidence
nucleus 5
cytosol 3

Gene Ontology (GO) - Cellular Components for HSPB9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IDA 19464326
GO:0005737 cytoplasm IDA 19464326
genes like me logo Genes that share ontologies with HSPB9: view

Pathways for HSPB9 Gene

SuperPathways for HSPB9 Gene

No Data Available

Interacting Proteins for HSPB9 Gene

Selected Interacting proteins: Q9BQS6-HSPB9_HUMAN for HSPB9 Gene via UniProtKB I2D

Gene Ontology (GO) - Biological Process for HSPB9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006950 response to stress --
genes like me logo Genes that share ontologies with HSPB9: view

No data available for Pathways by source for HSPB9 Gene

Transcripts for HSPB9 Gene

mRNA/cDNA for HSPB9 Gene

(1) REFSEQ mRNAs :
(4) Additional mRNA sequences :
(31) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for HSPB9 Gene

Heat shock protein, alpha-crystallin-related, B9:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for HSPB9 Gene

No ASD Table

Relevant External Links for HSPB9 Gene

GeneLoc Exon Structure for
HSPB9
ECgene alternative splicing isoforms for
HSPB9

Expression for HSPB9 Gene

mRNA expression in normal human tissues for HSPB9 Gene

mRNA differential expression in normal tissues according to GTEx for HSPB9 Gene

This gene is overexpressed in Testis (29.2) and Liver (5.1).

SOURCE GeneReport for Unigene cluster for HSPB9 Gene Hs.620611

mRNA Expression by UniProt/SwissProt for HSPB9 Gene

Q9BQS6-HSPB9_HUMAN
Tissue specificity: Testis specific.
genes like me logo Genes that share expressions with HSPB9: view

Orthologs for HSPB9 Gene

This gene was present in the common ancestor of mammals.

Orthologs for HSPB9 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia HSPB9 36
  • 98.74 (n)
  • 97.48 (a)
cow
(Bos Taurus)
Mammalia HSPB9 36
  • 74.29 (n)
  • 60.13 (a)
dog
(Canis familiaris)
Mammalia HSPB9 36
  • 74.47 (n)
  • 62.66 (a)
mouse
(Mus musculus)
Mammalia Hspb9 36
  • 69.5 (n)
  • 63.4 (a)
Hspb9 16
rat
(Rattus norvegicus)
Mammalia Hspb9 36
  • 71.79 (n)
  • 65.03 (a)
Species with no ortholog for HSPB9:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for HSPB9 Gene

ENSEMBL:
Gene Tree for HSPB9 (if available)
TreeFam:
Gene Tree for HSPB9 (if available)

Paralogs for HSPB9 Gene

No data available for Paralogs for HSPB9 Gene

Variants for HSPB9 Gene

Sequence variations from dbSNP and Humsavar for HSPB9 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type MAF
rs12453044 -- 42,123,541(+) aaaac(A/C)caaaa downstream-variant-500B
rs183497921 -- 42,123,837(+) CCCGT(C/T)TCTAC downstream-variant-500B
rs192858579 -- 42,123,627(+) GTGGA(A/G)GGAGG downstream-variant-500B
rs371880294 -- 42,123,406(+) GACTG(-/G)AGGCA downstream-variant-500B
rs373495537 -- 42,123,479(+) ATCAC(C/G/T)TGAGG downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for HSPB9 Gene

Variant ID Type Subtype PubMed ID
nsv908241 CNV Loss 21882294
dgv3169n71 CNV Loss 21882294

Relevant External Links for HSPB9 Gene

HapMap Linkage Disequilibrium report
HSPB9

Disorders for HSPB9 Gene

(1) University of Copenhagen DISEASES for HSPB9 Gene

genes like me logo Genes that share disorders with HSPB9: view

No data available for UniProtKB/Swiss-Prot for HSPB9 Gene

Publications for HSPB9 Gene

  1. The human genome encodes 10 alpha-crystallin-related small heat shock proteins: HspB1-10. (PMID: 12820654) KappAc G. … de Jong W.W. (Cell Stress Chaperones 2003) 2 3 23
  2. Characterization of two novel human small heat shock proteins: protein kinase-related HspB8 and testis-specific HspB9. (PMID: 11470154) Kappe G. … de Jong W.W. (Biochim. Biophys. Acta 2001) 2 3 4
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  5. HSPB7 is a SC35 speckle resident small heat shock protein. (PMID: 19464326) Vos M.J. … Kampinga H.H. (Biochim. Biophys. Acta 2009) 3 4

Products for HSPB9 Gene

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat
  • QIAGEN qRT-PCR Assays for microRNAs that regulate HSPB9
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for HSPB9
    • Block miRNA regulation of HSPB9 using miScript Target Protectors

    Sources for HSPB9 Gene

    Back to Top

    Content