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Aliases for HSPB9 Gene

Aliases for HSPB9 Gene

  • Heat Shock Protein Family B (Small) Member 9 2 3 5
  • Cancer/Testis Antigen 51 2 3 4
  • Heat Shock Protein, Alpha-Crystallin-Related, B9 2 3
  • CT51 3 4
  • Small Heat Shock Protein B9 3
  • Heat Shock Protein Beta-9 3
  • HspB9 4

External Ids for HSPB9 Gene

Previous GeneCards Identifiers for HSPB9 Gene

  • GC17P040648
  • GC17P037526
  • GC17P040274
  • GC17P036039

Summaries for HSPB9 Gene

GeneCards Summary for HSPB9 Gene

HSPB9 (Heat Shock Protein Family B (Small) Member 9) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HSPB9 Gene

Genomics for HSPB9 Gene

Regulatory Elements for HSPB9 Gene

Enhancers for HSPB9 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17F042128 1.4 Ensembl ENCODE 22.6 +11.6 11556 8.4 HDGF PKNOX1 ARNT MLX CREB3L1 ARID4B SIN3A DMAP1 ZNF2 YY1 DHX58 HSPB9 RAMP2-AS1 HMGN2P15 NAGLU RAB5C RPL27 AOC3 KCNH4 HCRT
GH17F042120 1 ENCODE 22.8 +0.5 518 2.6 HDGF PKNOX1 CREB3L1 ARID4B SIN3A DMAP1 ZNF48 YY1 GLIS2 ZNF143 HSPB9 NAGLU RPL27 AOC3 DHX58 AOC4P PIR31172
GH17F042141 1 Ensembl ENCODE 6 +21.2 21168 2.4 TFAP4 SIN3A FEZF1 ZIC2 DNMT3B RARA TEAD3 ZFHX2 POLR2A PRDM10 DHX58 HSPB9 LOC105371781 PIR31172
GH17F042088 0.9 FANTOM5 5.1 -33.0 -32968 0.0 SOX13 KLF1 SAP130 MLX ARID4B THRB ZNF48 NR2F6 GATAD2A SOX5 DHX58 KCNH4 HCRT KLHL10 HSPB9 CNP TTC25 ZNF385C ENSG00000267221
GH17F042242 0.6 Ensembl 5.2 +121.9 121870 1.4 ZNF121 ZNF362 SMARCA4 CEBPA CEBPG PRDM1 STAT5A HSPB9 ENSG00000280295 GC17P042265
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HSPB9 on UCSC Golden Path with GeneCards custom track

Promoters for HSPB9 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001346472 -331 1001 PKNOX1 CREB3L1 ARID4B SIN3A DMAP1 ZNF48 YY1 GLIS2 ZNF143 YY2

Genomic Location for HSPB9 Gene

Chromosome:
17
Start:
42,121,431 bp from pter
End:
42,123,353 bp from pter
Size:
1,923 bases
Orientation:
Plus strand

Genomic View for HSPB9 Gene

Genes around HSPB9 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HSPB9 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HSPB9 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HSPB9 Gene

Proteins for HSPB9 Gene

  • Protein details for HSPB9 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9BQS6-HSPB9_HUMAN
    Recommended name:
    Heat shock protein beta-9
    Protein Accession:
    Q9BQS6
    Secondary Accessions:
    • B3KSG6
    • Q52LB4

    Protein attributes for HSPB9 Gene

    Size:
    159 amino acids
    Molecular mass:
    17486 Da
    Quaternary structure:
    No Data Available

neXtProt entry for HSPB9 Gene

Post-translational modifications for HSPB9 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for HSPB9 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for HSPB9 Gene

Domains & Families for HSPB9 Gene

Gene Families for HSPB9 Gene

Protein Domains for HSPB9 Gene

Suggested Antigen Peptide Sequences for HSPB9 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9BQS6

UniProtKB/Swiss-Prot:

HSPB9_HUMAN :
  • Belongs to the small heat shock protein (HSP20) family.
Family:
  • Belongs to the small heat shock protein (HSP20) family.
genes like me logo Genes that share domains with HSPB9: view

Function for HSPB9 Gene

Gene Ontology (GO) - Molecular Function for HSPB9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 15503857
genes like me logo Genes that share ontologies with HSPB9: view
genes like me logo Genes that share phenotypes with HSPB9: view

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HSPB9 Gene

Localization for HSPB9 Gene

Subcellular locations from UniProtKB/Swiss-Prot for HSPB9 Gene

Cytoplasm. Nucleus. Note=Translocates to nuclear foci during heat shock.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for HSPB9 gene
Compartment Confidence
nucleus 5
cytosol 3

Gene Ontology (GO) - Cellular Components for HSPB9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA,IDA 19464326
GO:0005737 cytoplasm IEA,IDA 19464326
genes like me logo Genes that share ontologies with HSPB9: view

Pathways & Interactions for HSPB9 Gene

SuperPathways for HSPB9 Gene

No Data Available

Interacting Proteins for HSPB9 Gene

Gene Ontology (GO) - Biological Process for HSPB9 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HSPB9 Gene

Transcripts for HSPB9 Gene

mRNA/cDNA for HSPB9 Gene

(1) REFSEQ mRNAs :
(4) Additional mRNA sequences :
(31) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for HSPB9 Gene

Heat shock protein, alpha-crystallin-related, B9:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for HSPB9 Gene

No ASD Table

Relevant External Links for HSPB9 Gene

GeneLoc Exon Structure for
HSPB9
ECgene alternative splicing isoforms for
HSPB9

Expression for HSPB9 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for HSPB9 Gene

mRNA differential expression in normal tissues according to GTEx for HSPB9 Gene

This gene is overexpressed in Testis (x29.2) and Liver (x5.1).

NURSA nuclear receptor signaling pathways regulating expression of HSPB9 Gene:

HSPB9

SOURCE GeneReport for Unigene cluster for HSPB9 Gene:

Hs.620611

mRNA Expression by UniProt/SwissProt for HSPB9 Gene:

Q9BQS6-HSPB9_HUMAN
Tissue specificity: Testis specific.
genes like me logo Genes that share expression patterns with HSPB9: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression and Protein tissue co-expression partners for HSPB9 Gene

Orthologs for HSPB9 Gene

This gene was present in the common ancestor of mammals.

Orthologs for HSPB9 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia HSPB9 34
  • 98.74 (n)
dog
(Canis familiaris)
Mammalia HSPB9 34
  • 74.47 (n)
cow
(Bos Taurus)
Mammalia HSPB9 34
  • 74.29 (n)
rat
(Rattus norvegicus)
Mammalia Hspb9 34
  • 71.79 (n)
mouse
(Mus musculus)
Mammalia Hspb9 34 16
  • 69.5 (n)
Species where no ortholog for HSPB9 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for HSPB9 Gene

ENSEMBL:
Gene Tree for HSPB9 (if available)
TreeFam:
Gene Tree for HSPB9 (if available)

Paralogs for HSPB9 Gene

No data available for Paralogs for HSPB9 Gene

Variants for HSPB9 Gene

Sequence variations from dbSNP and Humsavar for HSPB9 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs1055231 -- 42,123,097(+) GACAG(C/T)AGCAA upstream-variant-2KB, reference, stop-gained
rs1122326 -- 42,122,855(+) GATGC(A/C)GAGAG upstream-variant-2KB, reference, missense
rs112789649 -- 42,121,023(+) CCCCG(A/G)ACTTG upstream-variant-2KB, reference, synonymous-codon, utr-variant-5-prime
rs114825373 -- 42,121,325(+) GGAGA(A/G)CGGCG upstream-variant-2KB, utr-variant-5-prime
rs116132823 -- 42,123,144(+) ATGTC(A/G)CAGAA upstream-variant-2KB, reference, synonymous-codon

Structural Variations from Database of Genomic Variants (DGV) for HSPB9 Gene

Variant ID Type Subtype PubMed ID
nsv1056904 CNV gain 25217958
nsv1146669 OTHER inversion 26484159
nsv953898 CNV deletion 24416366

Variation tolerance for HSPB9 Gene

Residual Variation Intolerance Score: 78.1% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 8.24; 84.99% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for HSPB9 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HSPB9

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for HSPB9 Gene

Disorders for HSPB9 Gene

Relevant External Links for HSPB9

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HSPB9

No disorders were found for HSPB9 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HSPB9 Gene

Publications for HSPB9 Gene

  1. The human genome encodes 10 alpha-crystallin-related small heat shock proteins: HspB1-10. (PMID: 12820654) KappAc G. … de Jong W.W. (Cell Stress Chaperones 2003) 2 3 22 64
  2. Characterization of two novel human small heat shock proteins: protein kinase-related HspB8 and testis-specific HspB9. (PMID: 11470154) Kappe G. … de Jong W.W. (Biochim. Biophys. Acta 2001) 2 3 4 64
  3. HSPB7 is a SC35 speckle resident small heat shock protein. (PMID: 19464326) Vos M.J. … Kampinga H.H. (Biochim. Biophys. Acta 2009) 3 4 64
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64

Products for HSPB9 Gene

Sources for HSPB9 Gene

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