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HSPB9 Gene

protein-coding   GIFtS: 43
GCID: GC17P040274

Heat Shock Protein, Alpha-Crystallin-Related, B9

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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Heat Shock Protein, Alpha-Crystallin-Related, B91 2
Cancer/Testis Antigen 511 2 3
CT512 3
Heat Shock Protein Beta-92
Small Heat Shock Protein B92
HspB93

External Ids:    HGNC: 305891   Entrez Gene: 940862   Ensembl: ENSG000001977237   OMIM: 6083445   UniProtKB: Q9BQS63   

Export aliases for HSPB9 gene to outside databases

Previous GC identifers: GC17P040648 GC17P037526 GC17P036039


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for HSPB9 Gene:
HSPB9 (heat shock protein, alpha-crystallin-related, B9) is a protein-coding gene.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000017.10  NC_018928.2  NT_010783.16  
Regulatory elements:
   Regulatory transcription factor binding sites in the HSPB9 gene promoter:
         ER-alpha   STAT1   STAT4   STAT6   STAT1beta   STAT5A   Egr-4   STAT1alpha   STAT2   STAT3   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidHSPB9 promoter sequence
   Search Chromatin IP Primers for HSPB9

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat HSPB9


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 17q21.2   Ensembl cytogenetic band:  17q21.2   HGNC cytogenetic band: 17q21

HSPB9 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
HSPB9 gene location

GeneLoc information about chromosome 17         GeneLoc Exon Structure

GeneLoc location for GC17P040274:  view genomic region     (about GC identifiers)

Start:
40,274,756 bp from pter      End:
40,275,371 bp from pter
Size:
616 bases      Orientation:
plus strand

1 alternative location:
Chr17+,NW_003571052 409,380-409,995     

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., and/or eBioscience,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., and/or eBioscience, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, Cloud-Clone Corp, and/or others.)
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UniProtKB/Swiss-Prot: HSPB9_HUMAN, Q9BQS6 (See protein sequence)
Recommended Name: Heat shock protein beta-9  
Size: 159 amino acids; 17486 Da
Secondary accessions: B3KSG6 Q52LB4

Explore the universe of human proteins at neXtProt for HSPB9: NX_Q9BQS6

Explore proteomics data for HSPB9 at MOPED


See HSPB9 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

REFSEQ proteins: NP_149971.1  
ENSEMBL proteins: 
 ENSP00000347178  

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(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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HGNC Gene Families:
HSPB: Heat shock proteins / HSPB

2 InterPro protein domains:
 IPR002068 a-crystallin/Hsp20_dom
 IPR008978 HSP20-like_chaperone

Graphical View of Domain Structure for InterPro Entry Q9BQS6

ProtoNet protein and cluster: Q9BQS6

UniProtKB/Swiss-Prot: HSPB9_HUMAN, Q9BQS6
Similarity: Belongs to the small heat shock protein (HSP20) family


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(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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     Gene Ontology (GO): 1 molecular function term:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005515protein binding IPI15503857
     
Find genes that share ontologies with HSPB9           About GenesLikeMe


Animal Models:
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(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Subcellular locations from UniProtKB/Swiss-Prot
HSPB9_HUMAN, Q9BQS6: Cytoplasm. Nucleus. Note=Translocates to nuclear foci during heat shock
Subcellular locations from COMPARTMENTS: 

CompartmentConfidence
nucleus5
cytosol3

Gene Ontology (GO): 2 cellular component terms:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005634nucleus IDA19464326
GO:0005737cytoplasm IDA19464326

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(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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    Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for HSPB9
Interactions:

    Search GeneGlobe Interaction Network for HSPB9

STRING Interaction Network Preview (showing 3 interactants - click image to see more details)

3 Interacting proteins for HSPB9 (Q9BQS61, 3 ENSP000003471784) via UniProtKB, MINT, STRING, and/or I2D
InteractantInteraction Details
GeneCardExternal ID(s)
DYNLT1P631721, 3, ENSP000003560564EBI-1176448,EBI-1176455 I2D: score=2 STRING: ENSP00000356056
CTCFP497113, ENSP000002640104I2D: score=1 STRING: ENSP00000264010
NUDT5Q9UKK93, ENSP000004196284I2D: score=1 STRING: ENSP00000419628
About this table

Gene Ontology (GO): 1 biological process term:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0006950response to stress IEA--

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(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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Browse Small Molecules at EMD Millipore
   Browse drugs & compounds from Enzo Life Sciences
  Browse compounds at ApexBio 

Browse Tocris compounds for HSPB9



(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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REFSEQ mRNAs for HSPB9 gene: 
NM_033194.2  

Unigene Cluster for HSPB9:

Heat shock protein, alpha-crystallin-related, B9
Hs.620611  [show with all ESTs]
Unigene Representative Sequence: AK093488
1 Ensembl transcript including schematic representation, and UCSC links where relevant:
ENST00000355067(uc002hyy.2)
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Additional mRNA sequence: 

AK093488.1 AK130947.1 BC093991.1 BC093993.1 

2 DOTS entries:

DT.307371  DT.100782516 

Selected AceView cDNA sequences (see all 31):

AK130947 AI203146 AW770522 AW003364 NM_033194 BF439726 BG149654 AK093488 
BM511126 AW206211 AX748161 BX280091 BU789224 BE348524 AA988974 AI915332 
AW016818 CK823778 AI203424 BM511386 AI279609 AI681241 AI038545 AI278971 

GeneLoc Exon Structure


(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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HSPB9 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: --
HSPB9 Expression
About this image

HSPB9 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

HSPB9 Protein Expression

SOURCE GeneReport for Unigene cluster: Hs.620611

UniProtKB/Swiss-Prot: HSPB9_HUMAN, Q9BQS6
Tissue specificity: Testis specific

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In Situ
Assay Products:
 

 
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(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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This gene was present in the common ancestor of human and mouse.

Orthologs for HSPB9 gene from Selected species (see all 5)    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
mouse
(Mus musculus)
Mammalia Hspb91 , 5 heat shock protein, alpha-crystallin-related, B91, 5 69.5(n)1
63.4(a)1
  11 (63.54 cM)5
754821  NM_029307.11  NP_083583.11 
 1007139225 


ENSEMBL Gene Tree for HSPB9 (if available)
TreeFam Gene Tree for HSPB9 (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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  --

(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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9 SNPs for HSPB9    About this table                                 

Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 17 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs124530441,2
C,F,H--40275559(+) aaaacA/Ccaaaa 1 -- ds50012Minor allele frequency- C:0.23NS NA 288
rs1928585791,2
C--40275645(+) GTGGAA/GGGAGG 1 -- ds50010--------
rs711576081,2
C--40275733(-) TTTTT-/TTT   
  TTTTTT
TTTTT
2 -- ds5001 cds11Minor allele frequency- TTTTTTTTT:0.00NA 2
rs1834979211,2
--40275855(+) CCCGTC/TTCTAC 1 -- ds50010--------
rs11223261,2,4
----see VAR_0220542 mis40--------
rs3718802941,2
----40275424(+) GACTG-/GAGGCA 1 -- ds50010--------
rs3769537341,2
----40275831(+) CCATCC/TTGGCT 1 -- ds50010--------
rs3743285411,2
----40275423(+) GGACT-/GGAGGC 1 -- ds50010--------
rs3734955371,2
----40275497(+) ATCACG/TTGAGG 1 -- ds50010--------

HapMap Linkage Disequilibrium report for HSPB9 (40274756 - 40275371 bp)

Structural Variations
     Database of Genomic Variants (DGV) 2 variations for HSPB9:    About this table    
Variant IDTypeSubtypePubMed ID
dgv3169n71CNV Loss21882294
nsv908241CNV Loss21882294

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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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OMIM gene information: 608344    OMIM disorders: --

1 disease from the University of Copenhagen DISEASES database for HSPB9:
Cleft palate

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Export disorders for HSPB9 gene to outside databases

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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PubMed articles for HSPB9 gene integrated from 10 sources:
(articles sorted by number of sources associating them with HSPB9)
    Utopia: connect your pdf to the dynamic
world of online information

  1. Characterization of two novel human small heat shock proteins: protein kinase-related HspB8 and testis-specific HspB9. (PubMed id 11470154)1, 2, 3 Kappe G.... de Jong W.W. (Biochim. Biophys. Acta 2001)
  2. The human genome encodes 10 alpha-crystallin-related small heat shock proteins: HspB1-10. (PubMed id 12820654)1, 3, 9 KappAc G....de Jong W.W. (amp 2003)
  3. HSPB7 is a SC35 speckle resident small heat shock protein. (PubMed id 19464326)1, 2 Vos M.J.... Kampinga H.H. (Biochim. Biophys. Acta 2009)
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S.... Malek J. (Genome Res. 2004)
  5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (Nat. Genet. 2004)
  6. Testis-specific human small heat shock protein HSPB9 is a cancer/testis antigen, and potentially interacts with the dynein subunit TCTEL1. (PubMed id 15503857)1 de Wit N.J....Boelens W.C. (Eur. J. Cell Biol. 2004)
  7. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)
  8. [Leiomyoma and leiomyosarcoma of the small intestine. Value of selective angiography]. (PubMed id 5503857)1 Tete R....Piante M. (J Med Lyon 1970)

(in PubMed, OMIM, and NCBI Bookshelf)
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 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 94086 HGNC: 30589 AceView: HSPB9 Ensembl:ENSG00000197723 euGenes: HUgn94086
ECgene: HSPB9 H-InvDB: HSPB9

(According to HUGE)
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  --

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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NameDescription
PharmGKB entry for HSPB9 Pharmacogenomics, SNPs, Pathways

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
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Patent Information for HSPB9 gene:
Search GeneIP for patents involving HSPB9

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, eBioscience, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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 Antibodies for HSPB9
 See all of Abcam's Antibodies, Kits and Proteins for HSPB9
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 Recombinant Protein for HSPB9
 Browse Proteins at Cloud-Clone Corp.
 Browse Antibodies at Cloud-Clone Corp.
 Browse ELISAs at Cloud-Clone Corp.
 Browse CLIAs at Cloud-Clone Corp.



 Browse ESI BIO Cell Lines and PureStem Progenitors for HSPB9
 Gene Synthesis
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 Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for HSPB9
 Browse SwitchGear 3'UTR luciferase reporter plasmids for HSPB9
 SwitchGear Promoter luciferase reporter plasmids for HSPB9
 Search ThermoFisher Antibodies for HSPB9
 Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat HSPB9
 inGenious Targeting Laboratory: Let us create your new Knockout/Knockin mouse model for HSPB9
 inGenious Targeting Laboratory: Contact us about creating complex and humanized mouse models for HSPB9
 LSBio Antibodies in human, mouse, rat for HSPB9
Customized transgenic rodents for:
 Humanization
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 Tissue-specific gene expresssion
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 Browse compounds at ApexBio
 Search Addgene for plasmids for HSPB9
  Search eBioscience for proteins for HSPB9
  Search eBioscience for elisas for HSPB9
  eBioscience FlowRNA Probe Sets
       
GeneCards Homepage - Last full update: 7 May 2014 - Incrementals: 9 May 2014 , 2 Jun 2014 , 26 Jun 2014 , 30 Jun 2014 , 21 Aug 2014 , 8 Sep 2014

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